Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC4.15□□□□□ -1.75
VPS4BO75351 AC055876.1-202ENST00000567053 138 ntBASIC4.15□□□□□ -1.75
VPS4BO75351 MIR3944-201ENST00000581277 108 ntBASIC4.15□□□□□ -1.75
VPS4BO75351 AL035413.2-201ENST00000604801 525 ntBASIC4.15□□□□□ -1.75
VPS4BO75351 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC4.15□□□□□ -1.75
VPS4BO75351 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC4.15□□□□□ -1.75
VPS4BO75351 AP005264.7-201ENST00000625003 745 ntBASIC4.15□□□□□ -1.75
VPS4BO75351 AC138649.5-201ENST00000637456 137 ntBASIC4.15□□□□□ -1.75
VPS4BO75351 MIR492-201ENST00000638676 116 ntBASIC4.15□□□□□ -1.75
VPS4BO75351 CKAP2P1-201ENST00000555477 2049 ntBASIC4.15□□□□□ -1.75
VPS4BO75351 ZNF680P1-201ENST00000436625 1469 ntBASIC4.15□□□□□ -1.75
VPS4BO75351 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC4.15□□□□□ -1.75
VPS4BO75351 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
VPS4BO75351 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
VPS4BO75351 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
VPS4BO75351 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC4.14□□□□□ -1.75
VPS4BO75351 AC090337.1-201ENST00000579651 2074 ntBASIC4.14□□□□□ -1.75
VPS4BO75351 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC4.14□□□□□ -1.75
VPS4BO75351 Y_RNA.22-201ENST00000362492 102 ntBASIC4.14□□□□□ -1.75
VPS4BO75351 RN7SKP44-201ENST00000363602 316 ntBASIC4.14□□□□□ -1.75
VPS4BO75351 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
VPS4BO75351 AC097374.1-203ENST00000400783 485 ntBASIC4.14□□□□□ -1.75
VPS4BO75351 RNA5SP317-201ENST00000410176 116 ntBASIC4.14□□□□□ -1.75
VPS4BO75351 RNA5SP311-201ENST00000411290 116 ntBASIC4.14□□□□□ -1.75
VPS4BO75351 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC4.14□□□□□ -1.75
VPS4BO75351 SNRPFP1-201ENST00000414761 252 ntBASIC4.14□□□□□ -1.75
VPS4BO75351 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC4.14□□□□□ -1.75
VPS4BO75351 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC4.14□□□□□ -1.75
VPS4BO75351 RPL23AP30-201ENST00000432419 501 ntBASIC4.14□□□□□ -1.75
VPS4BO75351 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC4.14□□□□□ -1.75
VPS4BO75351 AL606489.2-201ENST00000433886 234 ntBASIC4.14□□□□□ -1.75
VPS4BO75351 AL358232.1-201ENST00000448030 501 ntBASIC4.14□□□□□ -1.75
VPS4BO75351 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC4.14□□□□□ -1.75
VPS4BO75351 AL451050.1-201ENST00000450126 415 ntBASIC4.14□□□□□ -1.75
VPS4BO75351 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC4.14□□□□□ -1.75
VPS4BO75351 AL645939.1-201ENST00000453429 797 ntBASIC4.14□□□□□ -1.75
VPS4BO75351 AL356010.1-201ENST00000456364 102 ntBASIC4.14□□□□□ -1.75
VPS4BO75351 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC4.14□□□□□ -1.75
VPS4BO75351 RPL7P23-201ENST00000493874 747 ntBASIC4.14□□□□□ -1.75
VPS4BO75351 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC4.14□□□□□ -1.75
VPS4BO75351 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC4.14□□□□□ -1.75
VPS4BO75351 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC4.14□□□□□ -1.75
VPS4BO75351 RNA5SP315-201ENST00000516340 116 ntBASIC4.14□□□□□ -1.75
VPS4BO75351 RNA5SP312-201ENST00000517068 116 ntBASIC4.14□□□□□ -1.75
VPS4BO75351 RNU1-45P-201ENST00000517191 141 ntBASIC4.14□□□□□ -1.75
VPS4BO75351 AC011979.2-201ENST00000527568 352 ntBASIC4.14□□□□□ -1.75
VPS4BO75351 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC4.14□□□□□ -1.75
VPS4BO75351 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC4.14□□□□□ -1.75
VPS4BO75351 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC4.14□□□□□ -1.75
VPS4BO75351 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC4.14□□□□□ -1.75
VPS4BO75351 AC098848.2-201ENST00000588023 330 ntBASIC4.14□□□□□ -1.75
VPS4BO75351 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC4.14□□□□□ -1.75
VPS4BO75351 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC4.14□□□□□ -1.75
VPS4BO75351 AC093838.1-201ENST00000613014 469 ntBASIC4.14□□□□□ -1.75
VPS4BO75351 AC099669.2-201ENST00000616549 437 ntBASIC4.14□□□□□ -1.75
VPS4BO75351 AC004825.2-201ENST00000616634 455 ntBASIC4.14□□□□□ -1.75
VPS4BO75351 MIR6075-201ENST00000620782 95 ntBASIC4.14□□□□□ -1.75
VPS4BO75351 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC4.14□□□□□ -1.75
VPS4BO75351 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC4.14□□□□□ -1.75
VPS4BO75351 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
VPS4BO75351 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
VPS4BO75351 AC244517.1-201ENST00000606030 2086 ntBASIC4.14□□□□□ -1.75
VPS4BO75351 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC4.13□□□□□ -1.75
VPS4BO75351 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
VPS4BO75351 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
VPS4BO75351 HSPE1P11-201ENST00000339579 310 ntBASIC4.13□□□□□ -1.75
VPS4BO75351 MIR383-201ENST00000362257 73 ntBASIC4.13□□□□□ -1.75
VPS4BO75351 RNU6-451P-201ENST00000362921 107 ntBASIC4.13□□□□□ -1.75
VPS4BO75351 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
VPS4BO75351 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC4.13□□□□□ -1.75
VPS4BO75351 RNU6-356P-201ENST00000384140 107 ntBASIC4.13□□□□□ -1.75
VPS4BO75351 RNU6-606P-201ENST00000384721 111 ntBASIC4.13□□□□□ -1.75
VPS4BO75351 MIR1-2-201ENST00000384961 85 ntBASIC4.13□□□□□ -1.75
VPS4BO75351 RNU11-4P-201ENST00000391149 133 ntBASIC4.13□□□□□ -1.75
VPS4BO75351 PTMAP2-201ENST00000397627 327 ntBASIC4.13□□□□□ -1.75
VPS4BO75351 PPIAP31-201ENST00000405422 495 ntBASIC4.13□□□□□ -1.75
VPS4BO75351 AC009237.5-201ENST00000414271 501 ntBASIC4.13□□□□□ -1.75
VPS4BO75351 TMSB10P2-201ENST00000416049 131 ntBASIC4.13□□□□□ -1.75
VPS4BO75351 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC4.13□□□□□ -1.75
VPS4BO75351 GTF2IP20-201ENST00000431663 360 ntBASIC4.13□□□□□ -1.75
VPS4BO75351 USP12PX-201ENST00000432383 1057 ntBASIC4.13□□□□□ -1.75
VPS4BO75351 RPL35AP22-201ENST00000436855 335 ntBASIC4.13□□□□□ -1.75
VPS4BO75351 AC016691.1-201ENST00000441321 413 ntBASIC4.13□□□□□ -1.75
VPS4BO75351 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC4.13□□□□□ -1.75
VPS4BO75351 RPL23AP81-201ENST00000455252 467 ntBASIC4.13□□□□□ -1.75
VPS4BO75351 DHFRP3-201ENST00000455595 559 ntBASIC4.13□□□□□ -1.75
VPS4BO75351 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC4.13□□□□□ -1.75
VPS4BO75351 AL049714.1-201ENST00000466686 347 ntBASIC4.13□□□□□ -1.75
VPS4BO75351 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
VPS4BO75351 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC4.13□□□□□ -1.75
VPS4BO75351 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC4.13□□□□□ -1.75
VPS4BO75351 AC114781.4-201ENST00000513707 639 ntBASIC4.13□□□□□ -1.75
VPS4BO75351 RNU6-1095P-201ENST00000516148 108 ntBASIC4.13□□□□□ -1.75
VPS4BO75351 RNU6-798P-201ENST00000516912 103 ntBASIC4.13□□□□□ -1.75
VPS4BO75351 AL133271.1-201ENST00000538229 291 ntBASIC4.13□□□□□ -1.75
VPS4BO75351 CBX3P5-201ENST00000552017 521 ntBASIC4.13□□□□□ -1.75
VPS4BO75351 AC063950.1-201ENST00000552036 308 ntBASIC4.13□□□□□ -1.75
VPS4BO75351 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC4.13□□□□□ -1.75
VPS4BO75351 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC4.13□□□□□ -1.75
VPS4BO75351 MIR4286-201ENST00000580651 93 ntBASIC4.13□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 130.3 ms