Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 RNU6-1188P-201ENST00000363795 107 ntBASIC3.98□□□□□ -1.77
HOXA3O43365 RNA5SP505-201ENST00000364748 108 ntBASIC3.98□□□□□ -1.77
HOXA3O43365 RNU6-715P-201ENST00000365204 103 ntBASIC3.98□□□□□ -1.77
HOXA3O43365 Y_RNA.482-201ENST00000384377 111 ntBASIC3.98□□□□□ -1.77
HOXA3O43365 RNU6-14P-201ENST00000384630 106 ntBASIC3.98□□□□□ -1.77
HOXA3O43365 CISD1P1-201ENST00000393907 327 ntBASIC3.98□□□□□ -1.77
HOXA3O43365 AL139039.1-201ENST00000401900 692 ntBASIC3.98□□□□□ -1.77
HOXA3O43365 AL139397.2-201ENST00000404529 772 ntBASIC3.98□□□□□ -1.77
HOXA3O43365 AL035079.1-201ENST00000405210 287 ntBASIC3.98□□□□□ -1.77
HOXA3O43365 RNA5SP296-201ENST00000410523 111 ntBASIC3.98□□□□□ -1.77
HOXA3O43365 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC3.98□□□□□ -1.77
HOXA3O43365 RPL7AP73-201ENST00000413490 353 ntBASIC3.98□□□□□ -1.77
HOXA3O43365 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC3.98□□□□□ -1.77
HOXA3O43365 RPL7P10-201ENST00000417407 739 ntBASIC3.98□□□□□ -1.77
HOXA3O43365 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC3.98□□□□□ -1.77
HOXA3O43365 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC3.98□□□□□ -1.77
HOXA3O43365 AC093414.1-201ENST00000434712 514 ntBASIC3.98□□□□□ -1.77
HOXA3O43365 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC3.98□□□□□ -1.77
HOXA3O43365 AF228730.2-201ENST00000438784 848 ntBASIC3.98□□□□□ -1.77
HOXA3O43365 RPL32P28-201ENST00000443577 397 ntBASIC3.98□□□□□ -1.77
HOXA3O43365 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC3.98□□□□□ -1.77
HOXA3O43365 RPL7L1P1-201ENST00000448259 785 ntBASIC3.98□□□□□ -1.77
HOXA3O43365 AC090804.1-201ENST00000448870 490 ntBASIC3.98□□□□□ -1.77
HOXA3O43365 AC009963.2-201ENST00000453431 138 ntBASIC3.98□□□□□ -1.77
HOXA3O43365 RPL30P15-201ENST00000457129 321 ntBASIC3.98□□□□□ -1.77
HOXA3O43365 RNU7-167P-201ENST00000459160 62 ntBASIC3.98□□□□□ -1.77
HOXA3O43365 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC3.98□□□□□ -1.77
HOXA3O43365 AC012158.1-204ENST00000483430 465 ntBASIC3.98□□□□□ -1.77
HOXA3O43365 AP002812.1-201ENST00000495378 474 ntBASIC3.98□□□□□ -1.77
HOXA3O43365 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC3.98□□□□□ -1.77
HOXA3O43365 RNU4-60P-201ENST00000517239 135 ntBASIC3.98□□□□□ -1.77
HOXA3O43365 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC3.98□□□□□ -1.77
HOXA3O43365 AC012339.2-201ENST00000523996 453 ntBASIC3.98□□□□□ -1.77
HOXA3O43365 AP001880.2-201ENST00000538233 448 ntBASIC3.98□□□□□ -1.77
HOXA3O43365 AC018630.1-201ENST00000541376 925 ntBASIC3.98□□□□□ -1.77
HOXA3O43365 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC3.98□□□□□ -1.77
HOXA3O43365 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC3.98□□□□□ -1.77
HOXA3O43365 AC067852.3-201ENST00000589177 561 ntBASIC3.98□□□□□ -1.77
HOXA3O43365 AC006116.10-201ENST00000591836 581 ntBASIC3.98□□□□□ -1.77
HOXA3O43365 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC3.98□□□□□ -1.77
HOXA3O43365 AC008745.1-201ENST00000604064 271 ntBASIC3.98□□□□□ -1.77
HOXA3O43365 AC016925.2-201ENST00000605108 242 ntBASIC3.98□□□□□ -1.77
HOXA3O43365 AL391358.1-201ENST00000605342 190 ntBASIC3.98□□□□□ -1.77
HOXA3O43365 AC244517.12-201ENST00000623581 663 ntBASIC3.98□□□□□ -1.77
HOXA3O43365 MIR4275-201ENST00000636486 87 ntBASIC3.98□□□□□ -1.77
HOXA3O43365 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
HOXA3O43365 AL139811.1-201ENST00000424779 2299 ntBASIC3.98□□□□□ -1.77
HOXA3O43365 ZNF519P1-201ENST00000449011 1626 ntBASIC3.98□□□□□ -1.77
HOXA3O43365 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC3.98□□□□□ -1.77
HOXA3O43365 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC3.98□□□□□ -1.77
HOXA3O43365 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC3.97□□□□□ -1.77
HOXA3O43365 AC007823.1-201ENST00000569932 1566 ntBASIC3.97□□□□□ -1.77
HOXA3O43365 AL049555.1-201ENST00000562834 1933 ntBASIC3.97□□□□□ -1.77
HOXA3O43365 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC3.97□□□□□ -1.77
HOXA3O43365 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC3.97□□□□□ -1.77
HOXA3O43365 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC3.97□□□□□ -1.77
HOXA3O43365 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
HOXA3O43365 ANAPC1P1-201ENST00000426186 2145 ntBASIC3.97□□□□□ -1.77
HOXA3O43365 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC3.97□□□□□ -1.77
HOXA3O43365 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
HOXA3O43365 AC079741.1-201ENST00000321498 212 ntBASIC3.97□□□□□ -1.77
HOXA3O43365 FHIT-201ENST00000341848 174 ntTSL 3 BASIC3.97□□□□□ -1.77
HOXA3O43365 Y_RNA.31-201ENST00000362574 102 ntBASIC3.97□□□□□ -1.77
HOXA3O43365 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
HOXA3O43365 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
HOXA3O43365 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
HOXA3O43365 RNU6-434P-201ENST00000384376 107 ntBASIC3.97□□□□□ -1.77
HOXA3O43365 RNA5SP241-201ENST00000391326 114 ntBASIC3.97□□□□□ -1.77
HOXA3O43365 AL360182.1-201ENST00000397433 468 ntBASIC3.97□□□□□ -1.77
HOXA3O43365 MIR298-201ENST00000401212 88 ntBASIC3.97□□□□□ -1.77
HOXA3O43365 AC092809.3-201ENST00000415453 231 ntBASIC3.97□□□□□ -1.77
HOXA3O43365 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC3.97□□□□□ -1.77
HOXA3O43365 COX6CP13-201ENST00000428703 226 ntBASIC3.97□□□□□ -1.77
HOXA3O43365 DNAJC19P7-201ENST00000428811 344 ntBASIC3.97□□□□□ -1.77
HOXA3O43365 RPS29P9-201ENST00000440360 171 ntBASIC3.97□□□□□ -1.77
HOXA3O43365 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC3.97□□□□□ -1.77
HOXA3O43365 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC3.97□□□□□ -1.77
HOXA3O43365 AC245028.2-201ENST00000458673 253 ntBASIC3.97□□□□□ -1.77
HOXA3O43365 Y_RNA.653-201ENST00000459091 95 ntBASIC3.97□□□□□ -1.77
HOXA3O43365 OARD1-209ENST00000471367 401 ntTSL 2 BASIC3.97□□□□□ -1.77
HOXA3O43365 AC025164.1-201ENST00000496249 478 ntBASIC3.97□□□□□ -1.77
HOXA3O43365 TM4SF1-AS1-202ENST00000496491 754 ntTSL 2 BASIC3.97□□□□□ -1.77
HOXA3O43365 RPS27AP13-201ENST00000498403 237 ntBASIC3.97□□□□□ -1.77
HOXA3O43365 PTPN20-213ENST00000502705 854 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
HOXA3O43365 ENSA-211ENST00000503345 793 ntTSL 3 BASIC3.97□□□□□ -1.77
HOXA3O43365 AC079140.5-201ENST00000507882 310 ntBASIC3.97□□□□□ -1.77
HOXA3O43365 AC008526.1-201ENST00000509149 338 ntBASIC3.97□□□□□ -1.77
HOXA3O43365 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC3.97□□□□□ -1.77
HOXA3O43365 RNU2-69P-201ENST00000516061 100 ntBASIC3.97□□□□□ -1.77
HOXA3O43365 SNORA14.1-201ENST00000516113 141 ntBASIC3.97□□□□□ -1.77
HOXA3O43365 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC3.97□□□□□ -1.77
HOXA3O43365 IL7-206ENST00000520269 456 ntTSL 3 BASIC3.97□□□□□ -1.77
HOXA3O43365 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC3.97□□□□□ -1.77
HOXA3O43365 SMILR-201ENST00000533992 553 ntTSL 4 BASIC3.97□□□□□ -1.77
HOXA3O43365 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC3.97□□□□□ -1.77
HOXA3O43365 AL121603.1-201ENST00000553815 142 ntBASIC3.97□□□□□ -1.77
HOXA3O43365 RN7SL290P-201ENST00000578661 300 ntBASIC3.97□□□□□ -1.77
HOXA3O43365 MIR5692C1-201ENST00000585309 91 ntBASIC3.97□□□□□ -1.77
HOXA3O43365 AC019193.3-201ENST00000609144 554 ntBASIC3.97□□□□□ -1.77
HOXA3O43365 SDR42E1P2-201ENST00000614861 481 ntBASIC3.97□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 100.9 ms