Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC3.08□□□□□ -1.92
DDX28Q9NUL7 AC013244.3-201ENST00000605614 388 ntBASIC3.08□□□□□ -1.92
DDX28Q9NUL7 AL158211.4-201ENST00000606988 584 ntBASIC3.08□□□□□ -1.92
DDX28Q9NUL7 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC3.08□□□□□ -1.92
DDX28Q9NUL7 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC3.08□□□□□ -1.92
DDX28Q9NUL7 AC119674.1-207ENST00000641355 633 ntBASIC3.08□□□□□ -1.92
DDX28Q9NUL7 AC108206.1-201ENST00000570186 4159 ntBASIC3.08□□□□□ -1.92
DDX28Q9NUL7 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC3.08□□□□□ -1.92
DDX28Q9NUL7 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC3.08□□□□□ -1.92
DDX28Q9NUL7 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC3.08□□□□□ -1.92
DDX28Q9NUL7 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
DDX28Q9NUL7 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
DDX28Q9NUL7 SNORA51.4-201ENST00000364993 124 ntBASIC3.07□□□□□ -1.92
DDX28Q9NUL7 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC3.07□□□□□ -1.92
DDX28Q9NUL7 RSL24D1P4-201ENST00000400938 484 ntBASIC3.07□□□□□ -1.92
DDX28Q9NUL7 EIF4EBP2P3-201ENST00000403144 334 ntBASIC3.07□□□□□ -1.92
DDX28Q9NUL7 RN7SKP266-201ENST00000410232 287 ntBASIC3.07□□□□□ -1.92
DDX28Q9NUL7 RN7SKP123-201ENST00000410732 291 ntBASIC3.07□□□□□ -1.92
DDX28Q9NUL7 UBE2Q2P12-201ENST00000414573 204 ntBASIC3.07□□□□□ -1.92
DDX28Q9NUL7 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC3.07□□□□□ -1.92
DDX28Q9NUL7 HIGD1AP15-201ENST00000416198 280 ntBASIC3.07□□□□□ -1.92
DDX28Q9NUL7 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC3.07□□□□□ -1.92
DDX28Q9NUL7 USP9YP36-201ENST00000424581 829 ntBASIC3.07□□□□□ -1.92
DDX28Q9NUL7 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC3.07□□□□□ -1.92
DDX28Q9NUL7 AC090774.1-201ENST00000435925 246 ntBASIC3.07□□□□□ -1.92
DDX28Q9NUL7 RPL26P6-201ENST00000440913 438 ntBASIC3.07□□□□□ -1.92
DDX28Q9NUL7 AC003001.1-201ENST00000443247 1135 ntTSL 5 BASIC3.07□□□□□ -1.92
DDX28Q9NUL7 AL592447.1-201ENST00000447592 540 ntBASIC3.07□□□□□ -1.92
DDX28Q9NUL7 RN7SL293P-201ENST00000481765 281 ntBASIC3.07□□□□□ -1.92
DDX28Q9NUL7 AP000563.1-201ENST00000490865 758 ntBASIC3.07□□□□□ -1.92
DDX28Q9NUL7 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC3.07□□□□□ -1.92
DDX28Q9NUL7 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC3.07□□□□□ -1.92
DDX28Q9NUL7 MTRNR2L5-201ENST00000512524 739 ntAPPRIS P1 BASIC3.07□□□□□ -1.92
DDX28Q9NUL7 AC034159.1-201ENST00000513885 583 ntBASIC3.07□□□□□ -1.92
DDX28Q9NUL7 SNORA74D-201ENST00000516404 141 ntBASIC3.07□□□□□ -1.92
DDX28Q9NUL7 ERHP1-201ENST00000523006 310 ntBASIC3.07□□□□□ -1.92
DDX28Q9NUL7 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC3.07□□□□□ -1.92
DDX28Q9NUL7 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC3.07□□□□□ -1.92
DDX28Q9NUL7 AC136618.2-201ENST00000575091 400 ntBASIC3.07□□□□□ -1.92
DDX28Q9NUL7 MIR3921-201ENST00000577308 85 ntBASIC3.07□□□□□ -1.92
DDX28Q9NUL7 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC3.07□□□□□ -1.92
DDX28Q9NUL7 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.07□□□□□ -1.92
DDX28Q9NUL7 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC3.07□□□□□ -1.92
DDX28Q9NUL7 DLEU1_2.1-201ENST00000617920 342 ntBASIC3.07□□□□□ -1.92
DDX28Q9NUL7 AC103706.2-201ENST00000638080 240 ntBASIC3.07□□□□□ -1.92
DDX28Q9NUL7 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.07□□□□□ -1.92
DDX28Q9NUL7 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC3.07□□□□□ -1.92
DDX28Q9NUL7 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC3.07□□□□□ -1.92
DDX28Q9NUL7 RNU6-1078P-201ENST00000364522 103 ntBASIC3.06□□□□□ -1.92
DDX28Q9NUL7 RNU6-723P-201ENST00000383973 107 ntBASIC3.06□□□□□ -1.92
DDX28Q9NUL7 RNU6-76P-201ENST00000384060 104 ntBASIC3.06□□□□□ -1.92
DDX28Q9NUL7 SNORA9-201ENST00000384215 133 ntBASIC3.06□□□□□ -1.92
DDX28Q9NUL7 MIR183-201ENST00000384958 110 ntBASIC3.06□□□□□ -1.92
DDX28Q9NUL7 RPL21P3-201ENST00000395517 478 ntBASIC3.06□□□□□ -1.92
DDX28Q9NUL7 DBIP2-201ENST00000419076 262 ntBASIC3.06□□□□□ -1.92
DDX28Q9NUL7 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC3.06□□□□□ -1.92
DDX28Q9NUL7 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC3.06□□□□□ -1.92
DDX28Q9NUL7 YWHAZP7-201ENST00000436906 631 ntBASIC3.06□□□□□ -1.92
DDX28Q9NUL7 AC108734.1-201ENST00000439549 399 ntBASIC3.06□□□□□ -1.92
DDX28Q9NUL7 AC112653.1-201ENST00000443851 386 ntBASIC3.06□□□□□ -1.92
DDX28Q9NUL7 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC3.06□□□□□ -1.92
DDX28Q9NUL7 SNRPG-206ENST00000454893 527 ntTSL 3 BASIC3.06□□□□□ -1.92
DDX28Q9NUL7 AC146507.2-201ENST00000460608 476 ntBASIC3.06□□□□□ -1.92
DDX28Q9NUL7 AC021205.2-201ENST00000480069 347 ntBASIC3.06□□□□□ -1.92
DDX28Q9NUL7 AP001025.2-201ENST00000490908 477 ntBASIC3.06□□□□□ -1.92
DDX28Q9NUL7 AC104685.1-201ENST00000502445 371 ntBASIC3.06□□□□□ -1.92
DDX28Q9NUL7 LINC02213-202ENST00000506021 774 ntTSL 2 BASIC3.06□□□□□ -1.92
DDX28Q9NUL7 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
DDX28Q9NUL7 AL359273.1-201ENST00000510918 627 ntBASIC3.06□□□□□ -1.92
DDX28Q9NUL7 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC3.06□□□□□ -1.92
DDX28Q9NUL7 SNORA70.18-201ENST00000516696 98 ntBASIC3.06□□□□□ -1.92
DDX28Q9NUL7 SNORA70.19-201ENST00000516717 90 ntBASIC3.06□□□□□ -1.92
DDX28Q9NUL7 AC022690.1-201ENST00000526681 550 ntBASIC3.06□□□□□ -1.92
DDX28Q9NUL7 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC3.06□□□□□ -1.92
DDX28Q9NUL7 AC005832.2-201ENST00000538921 1430 ntBASIC3.06□□□□□ -1.92
DDX28Q9NUL7 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC3.06□□□□□ -1.92
DDX28Q9NUL7 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC3.06□□□□□ -1.92
DDX28Q9NUL7 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC3.06□□□□□ -1.92
DDX28Q9NUL7 MIR5195-201ENST00000583555 115 ntBASIC3.06□□□□□ -1.92
DDX28Q9NUL7 MIR4999-201ENST00000585029 91 ntBASIC3.06□□□□□ -1.92
DDX28Q9NUL7 AC105224.1-201ENST00000587055 421 ntBASIC3.06□□□□□ -1.92
DDX28Q9NUL7 AC006116.10-201ENST00000591836 581 ntBASIC3.06□□□□□ -1.92
DDX28Q9NUL7 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC3.06□□□□□ -1.92
DDX28Q9NUL7 AC024560.3-201ENST00000608482 349 ntBASIC3.06□□□□□ -1.92
DDX28Q9NUL7 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC3.06□□□□□ -1.92
DDX28Q9NUL7 AC243312.2-201ENST00000623340 601 ntBASIC3.06□□□□□ -1.92
DDX28Q9NUL7 AC009039.2-201ENST00000624524 529 ntBASIC3.06□□□□□ -1.92
DDX28Q9NUL7 AP000676.4-201ENST00000624659 623 ntBASIC3.06□□□□□ -1.92
DDX28Q9NUL7 AL392088.2-201ENST00000637607 285 ntBASIC3.06□□□□□ -1.92
DDX28Q9NUL7 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC3.06□□□□□ -1.92
DDX28Q9NUL7 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC3.06□□□□□ -1.92
DDX28Q9NUL7 CUL1P1-201ENST00000509510 2425 ntBASIC3.05□□□□□ -1.92
DDX28Q9NUL7 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.05□□□□□ -1.92
DDX28Q9NUL7 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
DDX28Q9NUL7 AL672167.1-206ENST00000356293 943 ntBASIC3.05□□□□□ -1.92
DDX28Q9NUL7 FRG1CP-201ENST00000358464 769 ntBASIC3.05□□□□□ -1.92
DDX28Q9NUL7 RNA5SP50-201ENST00000363731 107 ntBASIC3.05□□□□□ -1.92
DDX28Q9NUL7 SNORA14A-201ENST00000364773 135 ntBASIC3.05□□□□□ -1.92
DDX28Q9NUL7 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC3.05□□□□□ -1.92
DDX28Q9NUL7 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 97.3 ms