Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 AC073968.1-201ENST00000618594 637 ntBASIC3.38□□□□□ -1.87
SIX2Q9NPC8 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC3.38□□□□□ -1.87
SIX2Q9NPC8 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC3.38□□□□□ -1.87
SIX2Q9NPC8 AC093591.3-201ENST00000634516 308 ntBASIC3.38□□□□□ -1.87
SIX2Q9NPC8 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
SIX2Q9NPC8 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
SIX2Q9NPC8 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC3.38□□□□□ -1.87
SIX2Q9NPC8 AL133383.2-201ENST00000622958 2336 ntBASIC3.38□□□□□ -1.87
SIX2Q9NPC8 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.38□□□□□ -1.87
SIX2Q9NPC8 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.38□□□□□ -1.87
SIX2Q9NPC8 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
SIX2Q9NPC8 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC3.38□□□□□ -1.87
SIX2Q9NPC8 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.38□□□□□ -1.87
SIX2Q9NPC8 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC3.37□□□□□ -1.87
SIX2Q9NPC8 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
SIX2Q9NPC8 AC007390.2-201ENST00000606229 3803 ntBASIC3.37□□□□□ -1.87
SIX2Q9NPC8 AC093831.2-201ENST00000624393 3427 ntBASIC3.37□□□□□ -1.87
SIX2Q9NPC8 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
SIX2Q9NPC8 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
SIX2Q9NPC8 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC3.37□□□□□ -1.87
SIX2Q9NPC8 RNVU1-3-201ENST00000364313 161 ntBASIC3.37□□□□□ -1.87
SIX2Q9NPC8 RNU5E-5P-201ENST00000365379 116 ntBASIC3.37□□□□□ -1.87
SIX2Q9NPC8 Y_RNA.359-201ENST00000365498 102 ntBASIC3.37□□□□□ -1.87
SIX2Q9NPC8 SNORA7.4-201ENST00000384249 137 ntBASIC3.37□□□□□ -1.87
SIX2Q9NPC8 RNU6-339P-201ENST00000384310 107 ntBASIC3.37□□□□□ -1.87
SIX2Q9NPC8 RNU6-1119P-201ENST00000384349 108 ntBASIC3.37□□□□□ -1.87
SIX2Q9NPC8 SNORA46-201ENST00000384762 135 ntBASIC3.37□□□□□ -1.87
SIX2Q9NPC8 RPL21P3-201ENST00000395517 478 ntBASIC3.37□□□□□ -1.87
SIX2Q9NPC8 PVALB-202ENST00000404171 422 ntTSL 2 BASIC3.37□□□□□ -1.87
SIX2Q9NPC8 MTCO1P17-201ENST00000411522 491 ntBASIC3.37□□□□□ -1.87
SIX2Q9NPC8 B3GALNT1P1-201ENST00000420569 975 ntBASIC3.37□□□□□ -1.87
SIX2Q9NPC8 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
SIX2Q9NPC8 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC3.37□□□□□ -1.87
SIX2Q9NPC8 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC3.37□□□□□ -1.87
SIX2Q9NPC8 AC239367.2-201ENST00000447309 705 ntBASIC3.37□□□□□ -1.87
SIX2Q9NPC8 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC3.37□□□□□ -1.87
SIX2Q9NPC8 AP000542.1-201ENST00000448473 371 ntBASIC3.37□□□□□ -1.87
SIX2Q9NPC8 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC3.37□□□□□ -1.87
SIX2Q9NPC8 CFTRP1-201ENST00000456646 183 ntBASIC3.37□□□□□ -1.87
SIX2Q9NPC8 BTF3P5-201ENST00000457252 467 ntBASIC3.37□□□□□ -1.87
SIX2Q9NPC8 AC146507.2-201ENST00000460608 476 ntBASIC3.37□□□□□ -1.87
SIX2Q9NPC8 RPL7L1P8-201ENST00000469911 741 ntBASIC3.37□□□□□ -1.87
SIX2Q9NPC8 AC104563.1-201ENST00000476147 376 ntBASIC3.37□□□□□ -1.87
SIX2Q9NPC8 KCTD9P5-201ENST00000504141 1170 ntBASIC3.37□□□□□ -1.87
SIX2Q9NPC8 HSPD1P15-201ENST00000505573 1122 ntBASIC3.37□□□□□ -1.87
SIX2Q9NPC8 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC3.37□□□□□ -1.87
SIX2Q9NPC8 ARL2BPP4-201ENST00000506854 471 ntBASIC3.37□□□□□ -1.87
SIX2Q9NPC8 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC3.37□□□□□ -1.87
SIX2Q9NPC8 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC3.37□□□□□ -1.87
SIX2Q9NPC8 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
SIX2Q9NPC8 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC3.37□□□□□ -1.87
SIX2Q9NPC8 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC3.37□□□□□ -1.87
SIX2Q9NPC8 AP003033.1-201ENST00000527244 415 ntBASIC3.37□□□□□ -1.87
SIX2Q9NPC8 AP002748.2-201ENST00000528671 348 ntBASIC3.37□□□□□ -1.87
SIX2Q9NPC8 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC3.37□□□□□ -1.87
SIX2Q9NPC8 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC3.37□□□□□ -1.87
SIX2Q9NPC8 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC3.37□□□□□ -1.87
SIX2Q9NPC8 MIR5697-201ENST00000578045 78 ntBASIC3.37□□□□□ -1.87
SIX2Q9NPC8 MIR4458-201ENST00000578872 75 ntBASIC3.37□□□□□ -1.87
SIX2Q9NPC8 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC3.37□□□□□ -1.87
SIX2Q9NPC8 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC3.37□□□□□ -1.87
SIX2Q9NPC8 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC3.37□□□□□ -1.87
SIX2Q9NPC8 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC3.37□□□□□ -1.87
SIX2Q9NPC8 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC3.37□□□□□ -1.87
SIX2Q9NPC8 AL353997.4-201ENST00000586196 166 ntBASIC3.37□□□□□ -1.87
SIX2Q9NPC8 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC3.37□□□□□ -1.87
SIX2Q9NPC8 AC078795.2-201ENST00000602835 1252 ntBASIC3.37□□□□□ -1.87
SIX2Q9NPC8 AL139286.2-201ENST00000606838 396 ntBASIC3.37□□□□□ -1.87
SIX2Q9NPC8 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC3.37□□□□□ -1.87
SIX2Q9NPC8 AL590240.3-201ENST00000621416 943 ntBASIC3.37□□□□□ -1.87
SIX2Q9NPC8 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC3.37□□□□□ -1.87
SIX2Q9NPC8 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.37□□□□□ -1.87
SIX2Q9NPC8 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC3.36□□□□□ -1.87
SIX2Q9NPC8 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
SIX2Q9NPC8 AC106871.1-201ENST00000568324 3102 ntBASIC3.36□□□□□ -1.87
SIX2Q9NPC8 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
SIX2Q9NPC8 AC073325.2-201ENST00000339545 159 ntBASIC3.36□□□□□ -1.87
SIX2Q9NPC8 RNU6-28P-201ENST00000362378 107 ntBASIC3.36□□□□□ -1.87
SIX2Q9NPC8 RNU6-744P-201ENST00000365557 107 ntBASIC3.36□□□□□ -1.87
SIX2Q9NPC8 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC3.36□□□□□ -1.87
SIX2Q9NPC8 RNU6-1316P-201ENST00000384242 108 ntBASIC3.36□□□□□ -1.87
SIX2Q9NPC8 U3.29-201ENST00000391296 212 ntBASIC3.36□□□□□ -1.87
SIX2Q9NPC8 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC3.36□□□□□ -1.87
SIX2Q9NPC8 RNU2-16P-201ENST00000410712 136 ntBASIC3.36□□□□□ -1.87
SIX2Q9NPC8 AC007899.1-201ENST00000412776 775 ntBASIC3.36□□□□□ -1.87
SIX2Q9NPC8 RPL21P32-201ENST00000419877 477 ntBASIC3.36□□□□□ -1.87
SIX2Q9NPC8 AL159169.1-201ENST00000421119 127 ntBASIC3.36□□□□□ -1.87
SIX2Q9NPC8 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC3.36□□□□□ -1.87
SIX2Q9NPC8 MTCYBP45-201ENST00000435243 565 ntBASIC3.36□□□□□ -1.87
SIX2Q9NPC8 SDCBPP1-201ENST00000440192 890 ntBASIC3.36□□□□□ -1.87
SIX2Q9NPC8 RN7SL75P-201ENST00000461926 281 ntBASIC3.36□□□□□ -1.87
SIX2Q9NPC8 AP001992.1-205ENST00000462248 379 ntBASIC3.36□□□□□ -1.87
SIX2Q9NPC8 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC3.36□□□□□ -1.87
SIX2Q9NPC8 AC002456.2-201ENST00000509356 380 ntBASIC3.36□□□□□ -1.87
SIX2Q9NPC8 TMEM248P1-201ENST00000510579 951 ntBASIC3.36□□□□□ -1.87
SIX2Q9NPC8 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC3.36□□□□□ -1.87
SIX2Q9NPC8 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC3.36□□□□□ -1.87
SIX2Q9NPC8 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC3.36□□□□□ -1.87
SIX2Q9NPC8 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC3.36□□□□□ -1.87
SIX2Q9NPC8 MAL2-203ENST00000534619 578 ntTSL 4 BASIC3.36□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 83.2 ms