Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
NPAS3Q8IXF0 AC092070.2-203ENST00000598377 3644 ntBASIC5.6□□□□□ -1.51
NPAS3Q8IXF0 IPCEF1-202ENST00000367220 1658 ntAPPRIS ALT2 TSL 2 BASIC5.6□□□□□ -1.51
NPAS3Q8IXF0 ORC4-215ENST00000536575 6328 ntTSL 2 BASIC5.6□□□□□ -1.51
NPAS3Q8IXF0 LINC02421-201ENST00000542219 3135 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
NPAS3Q8IXF0 ZNF347-202ENST00000452676 4553 ntAPPRIS ALT2 TSL 2 BASIC5.6□□□□□ -1.51
NPAS3Q8IXF0 PIGN-239ENST00000639902 4439 ntTSL 5 BASIC5.6□□□□□ -1.51
NPAS3Q8IXF0 AC007996.1-201ENST00000620414 2821 ntBASIC5.6□□□□□ -1.51
NPAS3Q8IXF0 CHMP1B2P-202ENST00000614414 6813 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
NPAS3Q8IXF0 RNU6-960P-201ENST00000364056 120 ntBASIC5.6□□□□□ -1.51
NPAS3Q8IXF0 RNU6-270P-201ENST00000364131 105 ntBASIC5.6□□□□□ -1.51
NPAS3Q8IXF0 RNA5SP267-201ENST00000364893 126 ntBASIC5.6□□□□□ -1.51
NPAS3Q8IXF0 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
NPAS3Q8IXF0 RNU6-1056P-201ENST00000383996 107 ntBASIC5.6□□□□□ -1.51
NPAS3Q8IXF0 SNORA40-201ENST00000388090 126 ntBASIC5.6□□□□□ -1.51
NPAS3Q8IXF0 RNA5SP107-201ENST00000411358 122 ntBASIC5.6□□□□□ -1.51
NPAS3Q8IXF0 AL512844.2-201ENST00000433990 593 ntBASIC5.6□□□□□ -1.51
NPAS3Q8IXF0 AC006466.1-201ENST00000438721 289 ntBASIC5.6□□□□□ -1.51
NPAS3Q8IXF0 DAP3P1-201ENST00000441522 278 ntBASIC5.6□□□□□ -1.51
NPAS3Q8IXF0 AL137159.1-201ENST00000452808 512 ntBASIC5.6□□□□□ -1.51
NPAS3Q8IXF0 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC5.6□□□□□ -1.51
NPAS3Q8IXF0 HSPE1P25-201ENST00000455484 251 ntBASIC5.6□□□□□ -1.51
NPAS3Q8IXF0 RNU6-1211P-201ENST00000459179 105 ntBASIC5.6□□□□□ -1.51
NPAS3Q8IXF0 AC009127.1-201ENST00000467090 155 ntBASIC5.6□□□□□ -1.51
NPAS3Q8IXF0 HMGB1P25-201ENST00000468402 607 ntBASIC5.6□□□□□ -1.51
NPAS3Q8IXF0 TRAPPC2P7-201ENST00000509650 231 ntBASIC5.6□□□□□ -1.51
NPAS3Q8IXF0 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC5.6□□□□□ -1.51
NPAS3Q8IXF0 OR7H2P-201ENST00000513483 306 ntBASIC5.6□□□□□ -1.51
NPAS3Q8IXF0 RNA5SP373-201ENST00000517271 95 ntBASIC5.6□□□□□ -1.51
NPAS3Q8IXF0 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
NPAS3Q8IXF0 CASP1-212ENST00000531166 300 ntTSL 5 BASIC5.6□□□□□ -1.51
NPAS3Q8IXF0 AP002815.1-201ENST00000533740 386 ntTSL 3 BASIC5.6□□□□□ -1.51
NPAS3Q8IXF0 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC5.6□□□□□ -1.51
NPAS3Q8IXF0 AL133153.1-201ENST00000557756 303 ntBASIC5.6□□□□□ -1.51
NPAS3Q8IXF0 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC5.6□□□□□ -1.51
NPAS3Q8IXF0 AC023824.2-201ENST00000566185 400 ntBASIC5.6□□□□□ -1.51
NPAS3Q8IXF0 FAM25E-202ENST00000608562 189 ntBASIC5.6□□□□□ -1.51
NPAS3Q8IXF0 ZNF493-203ENST00000392288 5023 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
NPAS3Q8IXF0 PCGF5-205ENST00000614189 7037 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
NPAS3Q8IXF0 AC083843.3-201ENST00000623679 2186 ntBASIC5.6□□□□□ -1.51
NPAS3Q8IXF0 LINC01478-201ENST00000587877 2068 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
NPAS3Q8IXF0 MAPK10-370ENST00000641943 4117 ntAPPRIS P2 BASIC5.6□□□□□ -1.51
NPAS3Q8IXF0 LINC01524-201ENST00000428009 4390 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
NPAS3Q8IXF0 FIGN-201ENST00000333129 9536 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
NPAS3Q8IXF0 KSR2-201ENST00000339824 17726 ntAPPRIS P1 TSL 5 BASIC5.59□□□□□ -1.51
NPAS3Q8IXF0 AL353796.1-201ENST00000561542 3241 ntBASIC5.59□□□□□ -1.51
NPAS3Q8IXF0 IFT52-202ENST00000373039 1599 ntAPPRIS P1 TSL 5 BASIC5.59□□□□□ -1.51
NPAS3Q8IXF0 SLC1A2-203ENST00000395753 11689 ntAPPRIS ALT1 TSL 2 BASIC5.59□□□□□ -1.51
NPAS3Q8IXF0 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC5.59□□□□□ -1.51
NPAS3Q8IXF0 TCF4-268ENST00000629387 3789 ntAPPRIS ALT1 TSL 5 BASIC5.59□□□□□ -1.51
NPAS3Q8IXF0 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC5.59□□□□□ -1.51
NPAS3Q8IXF0 PAK3-205ENST00000417227 2196 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
NPAS3Q8IXF0 AC139426.3-201ENST00000605648 2059 ntBASIC5.59□□□□□ -1.51
NPAS3Q8IXF0 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC5.59□□□□□ -1.51
NPAS3Q8IXF0 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
NPAS3Q8IXF0 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC5.59□□□□□ -1.51
NPAS3Q8IXF0 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
NPAS3Q8IXF0 RNU6-595P-201ENST00000363944 107 ntBASIC5.59□□□□□ -1.51
NPAS3Q8IXF0 RNU6-151P-201ENST00000364158 107 ntBASIC5.59□□□□□ -1.51
NPAS3Q8IXF0 SNORA56-201ENST00000383966 129 ntBASIC5.59□□□□□ -1.51
NPAS3Q8IXF0 MIR649-201ENST00000384843 97 ntBASIC5.59□□□□□ -1.51
NPAS3Q8IXF0 MIR569-201ENST00000385228 96 ntBASIC5.59□□□□□ -1.51
NPAS3Q8IXF0 AL079342.1-201ENST00000401460 267 ntBASIC5.59□□□□□ -1.51
NPAS3Q8IXF0 AL030996.1-201ENST00000411430 235 ntBASIC5.59□□□□□ -1.51
NPAS3Q8IXF0 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC5.59□□□□□ -1.51
NPAS3Q8IXF0 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC5.59□□□□□ -1.51
NPAS3Q8IXF0 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC5.59□□□□□ -1.51
NPAS3Q8IXF0 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC5.59□□□□□ -1.51
NPAS3Q8IXF0 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
NPAS3Q8IXF0 PIGFP3-201ENST00000441918 722 ntBASIC5.59□□□□□ -1.51
NPAS3Q8IXF0 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC5.59□□□□□ -1.51
NPAS3Q8IXF0 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC5.59□□□□□ -1.51
NPAS3Q8IXF0 Z92846.1-201ENST00000456203 268 ntBASIC5.59□□□□□ -1.51
NPAS3Q8IXF0 RNU7-138P-201ENST00000459479 64 ntBASIC5.59□□□□□ -1.51
NPAS3Q8IXF0 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC5.59□□□□□ -1.51
NPAS3Q8IXF0 AC007016.1-201ENST00000512110 244 ntBASIC5.59□□□□□ -1.51
NPAS3Q8IXF0 AC104241.1-201ENST00000530039 628 ntTSL 3 BASIC5.59□□□□□ -1.51
NPAS3Q8IXF0 AC120057.2-201ENST00000571520 271 ntBASIC5.59□□□□□ -1.51
NPAS3Q8IXF0 MIR4480-201ENST00000582492 71 ntBASIC5.59□□□□□ -1.51
NPAS3Q8IXF0 AC011447.4-201ENST00000587562 111 ntBASIC5.59□□□□□ -1.51
NPAS3Q8IXF0 AC018695.3-201ENST00000602617 408 ntTSL 2 BASIC5.59□□□□□ -1.51
NPAS3Q8IXF0 Y_RNA.772-201ENST00000606692 102 ntBASIC5.59□□□□□ -1.51
NPAS3Q8IXF0 AL591516.1-201ENST00000611326 274 ntBASIC5.59□□□□□ -1.51
NPAS3Q8IXF0 CENPF-206ENST00000614578 528 ntTSL 5 BASIC5.59□□□□□ -1.51
NPAS3Q8IXF0 AL589994.2-201ENST00000621124 579 ntBASIC5.59□□□□□ -1.51
NPAS3Q8IXF0 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC5.59□□□□□ -1.51
NPAS3Q8IXF0 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC5.59□□□□□ -1.51
NPAS3Q8IXF0 CDRT1-208ENST00000630868 794 ntBASIC5.59□□□□□ -1.51
NPAS3Q8IXF0 Z99571.1-201ENST00000636677 394 ntBASIC5.59□□□□□ -1.51
NPAS3Q8IXF0 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC5.59□□□□□ -1.51
NPAS3Q8IXF0 FBXO3-208ENST00000530401 7410 ntTSL 2 BASIC5.59□□□□□ -1.51
NPAS3Q8IXF0 SYCP2L-207ENST00000543878 2436 ntAPPRIS ALT2 TSL 5 BASIC5.59□□□□□ -1.51
NPAS3Q8IXF0 ALCAM-205ENST00000472644 4189 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
NPAS3Q8IXF0 FAM135A-202ENST00000361499 5042 ntAPPRIS ALT1 TSL 1 (best) BASIC5.59□□□□□ -1.52
NPAS3Q8IXF0 AC004656.1-201ENST00000568479 4951 ntBASIC5.59□□□□□ -1.52
NPAS3Q8IXF0 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
NPAS3Q8IXF0 OR4F13P-202ENST00000560066 2054 ntBASIC5.59□□□□□ -1.52
NPAS3Q8IXF0 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
NPAS3Q8IXF0 AL078621.3-201ENST00000623707 2042 ntBASIC5.58□□□□□ -1.52
NPAS3Q8IXF0 WDPCP-203ENST00000409120 5408 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 121 ms