Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 AL592494.3-201ENST00000609485 464 ntBASIC1.49□□□□□ -2.17
CHD9Q3L8U1 AL596028.1-201ENST00000326971 197 ntBASIC1.49□□□□□ -2.17
CHD9Q3L8U1 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC1.49□□□□□ -2.17
CHD9Q3L8U1 MIR625-201ENST00000385047 85 ntBASIC1.49□□□□□ -2.17
CHD9Q3L8U1 RNU6-1320P-201ENST00000390838 107 ntBASIC1.49□□□□□ -2.17
CHD9Q3L8U1 RNU6-1269P-201ENST00000391139 107 ntBASIC1.49□□□□□ -2.17
CHD9Q3L8U1 AC240504.1-201ENST00000395709 845 ntBASIC1.49□□□□□ -2.17
CHD9Q3L8U1 AC099566.1-204ENST00000413825 943 ntTSL 3 BASIC1.49□□□□□ -2.17
CHD9Q3L8U1 WARS2P1-201ENST00000429678 537 ntBASIC1.49□□□□□ -2.17
CHD9Q3L8U1 RPS27P5-201ENST00000444247 244 ntBASIC1.49□□□□□ -2.17
CHD9Q3L8U1 AC243772.1-201ENST00000451620 410 ntBASIC1.49□□□□□ -2.17
CHD9Q3L8U1 RNU6-599P-201ENST00000459383 107 ntBASIC1.49□□□□□ -2.17
CHD9Q3L8U1 RNU6-1193P-201ENST00000459461 107 ntBASIC1.49□□□□□ -2.17
CHD9Q3L8U1 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC1.49□□□□□ -2.17
CHD9Q3L8U1 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC1.49□□□□□ -2.17
CHD9Q3L8U1 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC1.49□□□□□ -2.17
CHD9Q3L8U1 SYNE2-210ENST00000553455 674 ntTSL 2 BASIC1.49□□□□□ -2.17
CHD9Q3L8U1 RPL21P5-201ENST00000554662 472 ntBASIC1.49□□□□□ -2.17
CHD9Q3L8U1 AC025682.1-201ENST00000582389 437 ntTSL 5 BASIC1.49□□□□□ -2.17
CHD9Q3L8U1 AP005131.3-201ENST00000590042 665 ntTSL 3 BASIC1.49□□□□□ -2.17
CHD9Q3L8U1 RNU6-368P-201ENST00000620928 107 ntBASIC1.49□□□□□ -2.17
CHD9Q3L8U1 RNU6-538P-201ENST00000622329 107 ntBASIC1.49□□□□□ -2.17
CHD9Q3L8U1 CUL4AP1-201ENST00000514750 1863 ntBASIC1.48□□□□□ -2.17
CHD9Q3L8U1 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC1.48□□□□□ -2.17
CHD9Q3L8U1 SNRPEP2-201ENST00000397592 279 ntBASIC1.48□□□□□ -2.17
CHD9Q3L8U1 MTND4P13-201ENST00000402078 1023 ntBASIC1.48□□□□□ -2.17
CHD9Q3L8U1 RWDD4P2-201ENST00000426392 563 ntBASIC1.48□□□□□ -2.17
CHD9Q3L8U1 BLOC1S2P1-201ENST00000428431 301 ntBASIC1.48□□□□□ -2.17
CHD9Q3L8U1 RWDD4P1-201ENST00000488019 565 ntBASIC1.48□□□□□ -2.17
CHD9Q3L8U1 AC109349.1-201ENST00000503299 758 ntTSL 1 (best) BASIC1.48□□□□□ -2.17
CHD9Q3L8U1 LINC02428-201ENST00000508099 527 ntTSL 5 BASIC1.48□□□□□ -2.17
CHD9Q3L8U1 FABP5P5-201ENST00000515537 406 ntBASIC1.48□□□□□ -2.17
CHD9Q3L8U1 AC025016.1-201ENST00000616746 682 ntBASIC1.48□□□□□ -2.17
CHD9Q3L8U1 5S_rRNA.12-201ENST00000617631 107 ntBASIC1.48□□□□□ -2.17
CHD9Q3L8U1 AC025048.6-202ENST00000627667 438 ntBASIC1.48□□□□□ -2.17
CHD9Q3L8U1 OR6C3-203ENST00000641740 1093 ntAPPRIS P1 BASIC1.48□□□□□ -2.17
CHD9Q3L8U1 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.48□□□□□ -2.17
CHD9Q3L8U1 MIR320A-201ENST00000385302 82 ntBASIC1.48□□□□□ -2.17
CHD9Q3L8U1 NCSTNP1-201ENST00000406229 144 ntBASIC1.48□□□□□ -2.17
CHD9Q3L8U1 RNA5SP38-201ENST00000410750 119 ntBASIC1.48□□□□□ -2.17
CHD9Q3L8U1 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC1.48□□□□□ -2.17
CHD9Q3L8U1 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC1.48□□□□□ -2.17
CHD9Q3L8U1 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC1.48□□□□□ -2.17
CHD9Q3L8U1 RBMS3-AS1-201ENST00000414547 554 ntTSL 4 BASIC1.47□□□□□ -2.17
CHD9Q3L8U1 SNORD116-26-201ENST00000516006 96 ntBASIC1.47□□□□□ -2.17
CHD9Q3L8U1 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC1.47□□□□□ -2.17
CHD9Q3L8U1 AC104307.1-201ENST00000616142 196 ntBASIC1.47□□□□□ -2.17
CHD9Q3L8U1 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC1.47□□□□□ -2.17
CHD9Q3L8U1 AC021237.1-201ENST00000504175 1643 ntTSL 2 BASIC1.47□□□□□ -2.17
CHD9Q3L8U1 MUC15-204ENST00000527569 1386 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
CHD9Q3L8U1 Y_RNA.30-201ENST00000362572 97 ntBASIC1.47□□□□□ -2.17
CHD9Q3L8U1 DNAJC19P6-201ENST00000401853 280 ntBASIC1.47□□□□□ -2.17
CHD9Q3L8U1 Z85995.1-201ENST00000415547 335 ntBASIC1.47□□□□□ -2.17
CHD9Q3L8U1 AC244033.1-201ENST00000426826 870 ntBASIC1.47□□□□□ -2.17
CHD9Q3L8U1 TRIM60P13-201ENST00000432350 1283 ntBASIC1.47□□□□□ -2.17
CHD9Q3L8U1 AC092989.1-201ENST00000481235 277 ntBASIC1.47□□□□□ -2.17
CHD9Q3L8U1 ATG10-AS1-201ENST00000504846 648 ntBASIC1.47□□□□□ -2.17
CHD9Q3L8U1 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
CHD9Q3L8U1 SNORA31.11-201ENST00000516528 139 ntBASIC1.47□□□□□ -2.17
CHD9Q3L8U1 AC087373.1-201ENST00000524920 491 ntBASIC1.47□□□□□ -2.17
CHD9Q3L8U1 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
CHD9Q3L8U1 AP001005.3-201ENST00000622049 129 ntBASIC1.47□□□□□ -2.17
CHD9Q3L8U1 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC1.47□□□□□ -2.17
CHD9Q3L8U1 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC1.46□□□□□ -2.18
CHD9Q3L8U1 RNU6-37P-201ENST00000362692 107 ntBASIC1.46□□□□□ -2.18
CHD9Q3L8U1 RNU6-11P-201ENST00000364234 107 ntBASIC1.46□□□□□ -2.18
CHD9Q3L8U1 DEFB109C-201ENST00000382575 264 ntBASIC1.46□□□□□ -2.18
CHD9Q3L8U1 DEFB109B-201ENST00000382656 264 ntBASIC1.46□□□□□ -2.18
CHD9Q3L8U1 GNGT1-204ENST00000430875 628 ntTSL 2 BASIC1.46□□□□□ -2.18
CHD9Q3L8U1 CALM1P1-201ENST00000442082 433 ntBASIC1.46□□□□□ -2.18
CHD9Q3L8U1 AL162388.1-201ENST00000450912 352 ntBASIC1.46□□□□□ -2.18
CHD9Q3L8U1 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC1.46□□□□□ -2.18
CHD9Q3L8U1 PRELID2P1-201ENST00000552837 301 ntBASIC1.46□□□□□ -2.18
CHD9Q3L8U1 AL159169.2-201ENST00000610061 1269 ntBASIC1.46□□□□□ -2.18
CHD9Q3L8U1 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.46□□□□□ -2.18
CHD9Q3L8U1 AC009452.1-201ENST00000640823 606 ntBASIC1.46□□□□□ -2.18
CHD9Q3L8U1 U8.1-201ENST00000362843 134 ntBASIC1.46□□□□□ -2.18
CHD9Q3L8U1 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC1.46□□□□□ -2.18
CHD9Q3L8U1 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC1.46□□□□□ -2.18
CHD9Q3L8U1 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC1.46□□□□□ -2.18
CHD9Q3L8U1 AL137847.2-201ENST00000458111 527 ntTSL 3 BASIC1.46□□□□□ -2.18
CHD9Q3L8U1 AC016727.2-201ENST00000603988 621 ntBASIC1.46□□□□□ -2.18
CHD9Q3L8U1 MIR6788-201ENST00000618842 66 ntBASIC1.46□□□□□ -2.18
CHD9Q3L8U1 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC1.46□□□□□ -2.18
CHD9Q3L8U1 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC1.46□□□□□ -2.18
CHD9Q3L8U1 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC1.46□□□□□ -2.18
CHD9Q3L8U1 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC1.46□□□□□ -2.18
CHD9Q3L8U1 Y_RNA.458-201ENST00000384240 102 ntBASIC1.45□□□□□ -2.18
CHD9Q3L8U1 LINC01935-201ENST00000431897 437 ntTSL 3 BASIC1.45□□□□□ -2.18
CHD9Q3L8U1 MTND6P18-201ENST00000439477 513 ntBASIC1.45□□□□□ -2.18
CHD9Q3L8U1 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC1.45□□□□□ -2.18
CHD9Q3L8U1 MTND5P4-201ENST00000514978 288 ntBASIC1.45□□□□□ -2.18
CHD9Q3L8U1 AC027419.2-201ENST00000518439 497 ntTSL 3 BASIC1.45□□□□□ -2.18
CHD9Q3L8U1 AC099778.2-201ENST00000610904 211 ntBASIC1.45□□□□□ -2.18
CHD9Q3L8U1 DUXAP9-208ENST00000622815 614 ntBASIC1.45□□□□□ -2.18
CHD9Q3L8U1 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC1.45□□□□□ -2.18
CHD9Q3L8U1 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC1.45□□□□□ -2.18
CHD9Q3L8U1 RNA5SP239-201ENST00000410218 129 ntBASIC1.45□□□□□ -2.18
CHD9Q3L8U1 RPS12P24-201ENST00000412619 387 ntBASIC1.45□□□□□ -2.18
CHD9Q3L8U1 RN7SKP34-201ENST00000516142 244 ntBASIC1.45□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 80.2 ms