Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC099560.2-201ENST00000457554 255 ntBASIC5.26□□□□□ -1.57
MSX1P28360 AP006216.2-201ENST00000457746 333 ntTSL 5 BASIC5.26□□□□□ -1.57
MSX1P28360 AF186190.1-201ENST00000517470 480 ntBASIC5.26□□□□□ -1.57
MSX1P28360 AC021678.3-201ENST00000517893 476 ntBASIC5.26□□□□□ -1.57
MSX1P28360 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC5.26□□□□□ -1.57
MSX1P28360 AC098826.3-201ENST00000603823 466 ntBASIC5.26□□□□□ -1.57
MSX1P28360 FO393422.1-201ENST00000603908 708 ntBASIC5.26□□□□□ -1.57
MSX1P28360 AC006077.1-201ENST00000604746 343 ntBASIC5.26□□□□□ -1.57
MSX1P28360 AC211433.2-201ENST00000608433 387 ntBASIC5.26□□□□□ -1.57
MSX1P28360 AC090607.5-201ENST00000615692 224 ntBASIC5.26□□□□□ -1.57
MSX1P28360 RNA5SP439-201ENST00000617595 124 ntBASIC5.26□□□□□ -1.57
MSX1P28360 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC5.26□□□□□ -1.57
MSX1P28360 AC021753.1-201ENST00000635724 168 ntBASIC5.26□□□□□ -1.57
MSX1P28360 U6.92-201ENST00000636464 89 ntBASIC5.26□□□□□ -1.57
MSX1P28360 MIR4275-201ENST00000636486 87 ntBASIC5.26□□□□□ -1.57
MSX1P28360 BANK1-203ENST00000444316 3141 ntTSL 2 BASIC5.26□□□□□ -1.57
MSX1P28360 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
MSX1P28360 ROR1-AS1-202ENST00000424995 2189 ntTSL 2 BASIC5.26□□□□□ -1.57
MSX1P28360 ADGB-205ENST00000397944 5325 ntAPPRIS P5 TSL 5 BASIC5.26□□□□□ -1.57
MSX1P28360 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC5.26□□□□□ -1.57
MSX1P28360 SMAP1-206ENST00000619054 3150 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
MSX1P28360 NBPF20-205ENST00000622803 3689 ntTSL 5 BASIC5.26□□□□□ -1.57
MSX1P28360 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC5.26□□□□□ -1.57
MSX1P28360 TTI1-203ENST00000449821 3791 ntAPPRIS P1 TSL 2 BASIC5.26□□□□□ -1.57
MSX1P28360 AGO3-203ENST00000373191 19687 ntAPPRIS P1 TSL 2 BASIC5.25□□□□□ -1.57
MSX1P28360 AC004656.1-201ENST00000568479 4951 ntBASIC5.25□□□□□ -1.57
MSX1P28360 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
MSX1P28360 PROX1-205ENST00000498508 8498 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
MSX1P28360 AC005005.4-201ENST00000623789 16698 ntBASIC5.25□□□□□ -1.57
MSX1P28360 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC5.25□□□□□ -1.57
MSX1P28360 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC5.25□□□□□ -1.57
MSX1P28360 CPED1-203ENST00000423795 2189 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
MSX1P28360 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
MSX1P28360 SSH2-204ENST00000540801 4538 ntAPPRIS ALT2 TSL 2 BASIC5.25□□□□□ -1.57
MSX1P28360 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC5.25□□□□□ -1.57
MSX1P28360 RMST-209ENST00000639542 3269 ntTSL 5 BASIC5.25□□□□□ -1.57
MSX1P28360 PCDH15-201ENST00000320301 6845 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
MSX1P28360 ZNF81-202ENST00000338637 7859 ntAPPRIS P1 TSL 3 BASIC5.25□□□□□ -1.57
MSX1P28360 CDC123-202ENST00000378900 933 ntTSL 5 BASIC5.25□□□□□ -1.57
MSX1P28360 TRIM22-201ENST00000379965 2989 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
MSX1P28360 Y_RNA.534-201ENST00000384599 112 ntBASIC5.25□□□□□ -1.57
MSX1P28360 MIR521-1-201ENST00000384902 87 ntBASIC5.25□□□□□ -1.57
MSX1P28360 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC5.25□□□□□ -1.57
MSX1P28360 EI24P1-201ENST00000416584 867 ntBASIC5.25□□□□□ -1.57
MSX1P28360 RNF10P1-201ENST00000418589 369 ntBASIC5.25□□□□□ -1.57
MSX1P28360 AL355433.1-201ENST00000422804 300 ntBASIC5.25□□□□□ -1.57
MSX1P28360 LAMTOR3P1-201ENST00000428620 370 ntBASIC5.25□□□□□ -1.57
MSX1P28360 LINC02528-202ENST00000434437 535 ntTSL 2 BASIC5.25□□□□□ -1.57
MSX1P28360 RPL23AP22-201ENST00000437556 453 ntBASIC5.25□□□□□ -1.57
MSX1P28360 AC004938.1-201ENST00000438468 308 ntBASIC5.25□□□□□ -1.57
MSX1P28360 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC5.25□□□□□ -1.57
MSX1P28360 AL445433.1-201ENST00000457507 257 ntBASIC5.25□□□□□ -1.57
MSX1P28360 AKIRIN2P1-201ENST00000505898 352 ntBASIC5.25□□□□□ -1.57
MSX1P28360 RNU6-861P-201ENST00000516745 106 ntBASIC5.25□□□□□ -1.57
MSX1P28360 MRPS36P4-201ENST00000534436 298 ntBASIC5.25□□□□□ -1.57
MSX1P28360 AC096996.1-201ENST00000563813 325 ntBASIC5.25□□□□□ -1.57
MSX1P28360 MIR4505-201ENST00000582238 73 ntBASIC5.25□□□□□ -1.57
MSX1P28360 AC060780.2-201ENST00000589047 198 ntBASIC5.25□□□□□ -1.57
MSX1P28360 Z83818.1-201ENST00000603584 150 ntBASIC5.25□□□□□ -1.57
MSX1P28360 AC123912.5-201ENST00000605470 343 ntBASIC5.25□□□□□ -1.57
MSX1P28360 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC5.25□□□□□ -1.57
MSX1P28360 SAMSN1-203ENST00000400566 1888 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
MSX1P28360 MFSD8-239ENST00000641590 2479 ntBASIC5.25□□□□□ -1.57
MSX1P28360 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC5.25□□□□□ -1.57
MSX1P28360 AC097461.1-201ENST00000568928 2821 ntBASIC5.25□□□□□ -1.57
MSX1P28360 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
MSX1P28360 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC5.25□□□□□ -1.57
MSX1P28360 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC5.25□□□□□ -1.57
MSX1P28360 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
MSX1P28360 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC5.25□□□□□ -1.57
MSX1P28360 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC5.25□□□□□ -1.57
MSX1P28360 NCOA7-201ENST00000229634 2998 ntAPPRIS ALT2 TSL 2 BASIC5.25□□□□□ -1.57
MSX1P28360 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
MSX1P28360 AC009229.4-201ENST00000623854 1947 ntBASIC5.25□□□□□ -1.57
MSX1P28360 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
MSX1P28360 TERB1-203ENST00000558713 2257 ntAPPRIS P1 TSL 5 BASIC5.25□□□□□ -1.57
MSX1P28360 LINC00906-206ENST00000589921 3444 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
MSX1P28360 VPS50-220ENST00000544910 5736 ntTSL 2 BASIC5.24□□□□□ -1.57
MSX1P28360 CLCN3-201ENST00000347613 3635 ntAPPRIS P4 TSL 1 (best) BASIC5.24□□□□□ -1.57
MSX1P28360 BACH1-201ENST00000286800 5669 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
MSX1P28360 FBXW12-201ENST00000296438 1647 ntAPPRIS P3 TSL 1 (best) BASIC5.24□□□□□ -1.57
MSX1P28360 ASAH2-202ENST00000395526 6880 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
MSX1P28360 CEP85L-201ENST00000360290 1736 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
MSX1P28360 Y_RNA.143-201ENST00000363520 106 ntBASIC5.24□□□□□ -1.57
MSX1P28360 SNORD50.2-201ENST00000365465 70 ntBASIC5.24□□□□□ -1.57
MSX1P28360 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
MSX1P28360 RNU2-50P-201ENST00000410494 143 ntBASIC5.24□□□□□ -1.57
MSX1P28360 BMS1P17-202ENST00000416720 316 ntBASIC5.24□□□□□ -1.57
MSX1P28360 TMEM167AP1-201ENST00000423409 219 ntBASIC5.24□□□□□ -1.57
MSX1P28360 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC5.24□□□□□ -1.57
MSX1P28360 AC016712.1-201ENST00000431088 378 ntBASIC5.24□□□□□ -1.57
MSX1P28360 ELOCP18-201ENST00000434209 337 ntBASIC5.24□□□□□ -1.57
MSX1P28360 MRPL48P1-201ENST00000445390 636 ntBASIC5.24□□□□□ -1.57
MSX1P28360 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC5.24□□□□□ -1.57
MSX1P28360 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC5.24□□□□□ -1.57
MSX1P28360 AC074198.2-201ENST00000508153 258 ntBASIC5.24□□□□□ -1.57
MSX1P28360 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC5.24□□□□□ -1.57
MSX1P28360 TRAPPC2P2-201ENST00000517589 409 ntBASIC5.24□□□□□ -1.57
MSX1P28360 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC5.24□□□□□ -1.57
MSX1P28360 AC010186.2-204ENST00000537668 439 ntBASIC5.24□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 134.9 ms