Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AC079089.3-201ENST00000603094 673 ntBASIC1.88□□□□□ -2.11
HLA-DMBP28068 AL137847.3-201ENST00000611521 109 ntBASIC1.88□□□□□ -2.11
HLA-DMBP28068 MIR6895-201ENST00000613497 78 ntBASIC1.88□□□□□ -2.11
HLA-DMBP28068 MIR6817-201ENST00000615588 66 ntBASIC1.88□□□□□ -2.11
HLA-DMBP28068 CYP3A51P-201ENST00000633513 256 ntBASIC1.88□□□□□ -2.11
HLA-DMBP28068 CRYM-AS1-204ENST00000637983 556 ntBASIC1.88□□□□□ -2.11
HLA-DMBP28068 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC1.88□□□□□ -2.11
HLA-DMBP28068 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC1.88□□□□□ -2.11
HLA-DMBP28068 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC1.88□□□□□ -2.11
HLA-DMBP28068 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
HLA-DMBP28068 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC1.87□□□□□ -2.11
HLA-DMBP28068 AC009812.4-201ENST00000569134 1805 ntBASIC1.87□□□□□ -2.11
HLA-DMBP28068 AC069528.2-201ENST00000624849 1991 ntBASIC1.87□□□□□ -2.11
HLA-DMBP28068 FRG1BP-201ENST00000278882 761 ntBASIC1.87□□□□□ -2.11
HLA-DMBP28068 RNU4-82P-201ENST00000362443 140 ntBASIC1.87□□□□□ -2.11
HLA-DMBP28068 RNU6-251P-201ENST00000363235 104 ntBASIC1.87□□□□□ -2.11
HLA-DMBP28068 RNA5SP68-201ENST00000363885 119 ntBASIC1.87□□□□□ -2.11
HLA-DMBP28068 MRRF-203ENST00000373723 1176 ntTSL 3 BASIC1.87□□□□□ -2.11
HLA-DMBP28068 RNU6-198P-201ENST00000384258 104 ntBASIC1.87□□□□□ -2.11
HLA-DMBP28068 RNU6-1197P-201ENST00000391183 107 ntBASIC1.87□□□□□ -2.11
HLA-DMBP28068 C4orf45-201ENST00000434826 1215 ntAPPRIS P1 TSL 2 BASIC1.87□□□□□ -2.11
HLA-DMBP28068 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC1.87□□□□□ -2.11
HLA-DMBP28068 SDAD1P2-201ENST00000441308 2028 ntBASIC1.87□□□□□ -2.11
HLA-DMBP28068 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC1.87□□□□□ -2.11
HLA-DMBP28068 Z82190.1-201ENST00000454534 490 ntBASIC1.87□□□□□ -2.11
HLA-DMBP28068 PNPLA4P1-201ENST00000458328 305 ntBASIC1.87□□□□□ -2.11
HLA-DMBP28068 AC008696.2-201ENST00000503323 825 ntTSL 3 BASIC1.87□□□□□ -2.11
HLA-DMBP28068 AC006390.1-201ENST00000508068 283 ntBASIC1.87□□□□□ -2.11
HLA-DMBP28068 AC107222.1-201ENST00000510899 637 ntBASIC1.87□□□□□ -2.11
HLA-DMBP28068 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
HLA-DMBP28068 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
HLA-DMBP28068 PRELID2P1-201ENST00000552837 301 ntBASIC1.87□□□□□ -2.11
HLA-DMBP28068 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC1.87□□□□□ -2.11
HLA-DMBP28068 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC1.87□□□□□ -2.11
HLA-DMBP28068 AC009097.3-201ENST00000563557 1018 ntBASIC1.87□□□□□ -2.11
HLA-DMBP28068 AC010546.1-201ENST00000569391 485 ntBASIC1.87□□□□□ -2.11
HLA-DMBP28068 AC090616.3-201ENST00000582184 217 ntBASIC1.87□□□□□ -2.11
HLA-DMBP28068 AC061975.8-201ENST00000587058 721 ntBASIC1.87□□□□□ -2.11
HLA-DMBP28068 GAS5-AS1-201ENST00000602767 694 ntBASIC1.87□□□□□ -2.11
HLA-DMBP28068 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC1.87□□□□□ -2.11
HLA-DMBP28068 AL161629.2-201ENST00000615347 275 ntBASIC1.87□□□□□ -2.11
HLA-DMBP28068 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC1.87□□□□□ -2.11
HLA-DMBP28068 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
HLA-DMBP28068 AL356585.4-201ENST00000623078 1229 ntBASIC1.87□□□□□ -2.11
HLA-DMBP28068 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC1.87□□□□□ -2.11
HLA-DMBP28068 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC1.87□□□□□ -2.11
HLA-DMBP28068 GDI2P1-201ENST00000429312 1336 ntBASIC1.87□□□□□ -2.11
HLA-DMBP28068 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC1.86□□□□□ -2.11
HLA-DMBP28068 AC007336.1-201ENST00000576365 3828 ntBASIC1.86□□□□□ -2.11
HLA-DMBP28068 MIR21-201ENST00000362134 72 ntBASIC1.86□□□□□ -2.11
HLA-DMBP28068 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC1.86□□□□□ -2.11
HLA-DMBP28068 AL513475.1-201ENST00000406602 315 ntBASIC1.86□□□□□ -2.11
HLA-DMBP28068 AL139098.1-201ENST00000407291 389 ntBASIC1.86□□□□□ -2.11
HLA-DMBP28068 USP9YP27-201ENST00000418455 438 ntBASIC1.86□□□□□ -2.11
HLA-DMBP28068 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC1.86□□□□□ -2.11
HLA-DMBP28068 VN1R42P-201ENST00000424651 344 ntBASIC1.86□□□□□ -2.11
HLA-DMBP28068 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC1.86□□□□□ -2.11
HLA-DMBP28068 Z93242.1-201ENST00000427102 353 ntBASIC1.86□□□□□ -2.11
HLA-DMBP28068 AC005345.1-201ENST00000431868 217 ntBASIC1.86□□□□□ -2.11
HLA-DMBP28068 TRIM60P13-201ENST00000432350 1283 ntBASIC1.86□□□□□ -2.11
HLA-DMBP28068 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC1.86□□□□□ -2.11
HLA-DMBP28068 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC1.86□□□□□ -2.11
HLA-DMBP28068 AC011753.1-201ENST00000451001 220 ntBASIC1.86□□□□□ -2.11
HLA-DMBP28068 EEF1B2P7-201ENST00000451177 676 ntBASIC1.86□□□□□ -2.11
HLA-DMBP28068 AL662889.1-201ENST00000453572 389 ntTSL 3 BASIC1.86□□□□□ -2.11
HLA-DMBP28068 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC1.86□□□□□ -2.11
HLA-DMBP28068 AC092798.1-201ENST00000458542 409 ntBASIC1.86□□□□□ -2.11
HLA-DMBP28068 NAA50-206ENST00000493454 964 ntTSL 2 BASIC1.86□□□□□ -2.11
HLA-DMBP28068 RPS27P26-201ENST00000494583 239 ntBASIC1.86□□□□□ -2.11
HLA-DMBP28068 RPL30P5-201ENST00000494923 336 ntBASIC1.86□□□□□ -2.11
HLA-DMBP28068 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC1.86□□□□□ -2.11
HLA-DMBP28068 AC104803.1-201ENST00000506917 529 ntTSL 3 BASIC1.86□□□□□ -2.11
HLA-DMBP28068 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC1.86□□□□□ -2.11
HLA-DMBP28068 OR5BM1P-201ENST00000512021 366 ntBASIC1.86□□□□□ -2.11
HLA-DMBP28068 SUB1-211ENST00000512913 684 ntAPPRIS P1 TSL 2 BASIC1.86□□□□□ -2.11
HLA-DMBP28068 AC095057.2-201ENST00000515422 553 ntTSL 4 BASIC1.86□□□□□ -2.11
HLA-DMBP28068 RNA5SP320-201ENST00000516263 124 ntBASIC1.86□□□□□ -2.11
HLA-DMBP28068 RNA5SP148-201ENST00000516527 94 ntBASIC1.86□□□□□ -2.11
HLA-DMBP28068 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC1.86□□□□□ -2.11
HLA-DMBP28068 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC1.86□□□□□ -2.11
HLA-DMBP28068 OR5BN1P-201ENST00000532955 829 ntBASIC1.86□□□□□ -2.11
HLA-DMBP28068 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC1.86□□□□□ -2.11
HLA-DMBP28068 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC1.86□□□□□ -2.11
HLA-DMBP28068 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC1.86□□□□□ -2.11
HLA-DMBP28068 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC1.86□□□□□ -2.11
HLA-DMBP28068 SULT1C2P1-202ENST00000562418 459 ntBASIC1.86□□□□□ -2.11
HLA-DMBP28068 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC1.86□□□□□ -2.11
HLA-DMBP28068 AMZ2P1-203ENST00000565833 850 ntBASIC1.86□□□□□ -2.11
HLA-DMBP28068 AC133065.1-201ENST00000572017 575 ntTSL 3 BASIC1.86□□□□□ -2.11
HLA-DMBP28068 ISCA1P3-201ENST00000577104 373 ntBASIC1.86□□□□□ -2.11
HLA-DMBP28068 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC1.86□□□□□ -2.11
HLA-DMBP28068 AC133794.1-201ENST00000602731 914 ntBASIC1.86□□□□□ -2.11
HLA-DMBP28068 AC007953.2-201ENST00000603299 193 ntTSL 5 BASIC1.86□□□□□ -2.11
HLA-DMBP28068 AL645944.1-201ENST00000603857 493 ntBASIC1.86□□□□□ -2.11
HLA-DMBP28068 AC245517.5-201ENST00000611529 162 ntBASIC1.86□□□□□ -2.11
HLA-DMBP28068 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC1.86□□□□□ -2.11
HLA-DMBP28068 VN1R7P-201ENST00000619242 903 ntBASIC1.86□□□□□ -2.11
HLA-DMBP28068 AC074099.1-201ENST00000634100 679 ntTSL 5 BASIC1.86□□□□□ -2.11
HLA-DMBP28068 TPTE2P4-201ENST00000258589 1605 ntBASIC1.86□□□□□ -2.11
HLA-DMBP28068 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 152.8 ms