Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AC139365.2-201ENST00000517972 253 ntBASIC4.99□□□□□ -1.61
COL8A1P27658 AC007458.1-201ENST00000542812 373 ntBASIC4.99□□□□□ -1.61
COL8A1P27658 BDH2P1-201ENST00000602288 736 ntBASIC4.99□□□□□ -1.61
COL8A1P27658 AC018695.3-201ENST00000602617 408 ntTSL 2 BASIC4.99□□□□□ -1.61
COL8A1P27658 THEMIS-206ENST00000630369 2786 ntAPPRIS ALT2 TSL 1 (best) BASIC4.99□□□□□ -1.61
COL8A1P27658 ARHGAP20-204ENST00000528829 5880 ntAPPRIS ALT2 TSL 1 (best) BASIC4.99□□□□□ -1.61
COL8A1P27658 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC4.99□□□□□ -1.61
COL8A1P27658 Z95114.1-201ENST00000624264 14574 ntBASIC4.99□□□□□ -1.61
COL8A1P27658 TMOD2-201ENST00000249700 9191 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
COL8A1P27658 POT1-202ENST00000393329 3950 ntTSL 5 BASIC4.99□□□□□ -1.61
COL8A1P27658 ZNF233-205ENST00000592581 2938 ntTSL 2 BASIC4.99□□□□□ -1.61
COL8A1P27658 PLEKHA5-202ENST00000424268 4391 ntTSL 2 BASIC4.99□□□□□ -1.61
COL8A1P27658 CNTN1-208ENST00000551295 5557 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
COL8A1P27658 ZBTB38-222ENST00000637056 6056 ntAPPRIS P1 TSL 5 BASIC4.98□□□□□ -1.61
COL8A1P27658 AC092747.4-201ENST00000620519 1861 ntBASIC4.98□□□□□ -1.61
COL8A1P27658 PANDAR-201ENST00000629595 1506 ntBASIC4.98□□□□□ -1.61
COL8A1P27658 HMMR-203ENST00000393915 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC4.98□□□□□ -1.61
COL8A1P27658 ESRRG-204ENST00000361525 5363 ntAPPRIS P1 TSL 5 BASIC4.98□□□□□ -1.61
COL8A1P27658 IKZF3-210ENST00000377958 1837 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
COL8A1P27658 KLHL5-202ENST00000261426 3300 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
COL8A1P27658 MRE11-204ENST00000407439 2684 ntTSL 2 BASIC4.98□□□□□ -1.61
COL8A1P27658 TRPC4-204ENST00000379673 2760 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
COL8A1P27658 DOPEY1-201ENST00000237163 7995 ntAPPRIS ALT1 TSL 5 BASIC4.98□□□□□ -1.61
COL8A1P27658 Y_RNA.308-201ENST00000365043 101 ntBASIC4.98□□□□□ -1.61
COL8A1P27658 Y_RNA.358-201ENST00000365491 99 ntBASIC4.98□□□□□ -1.61
COL8A1P27658 SNORD82-201ENST00000365530 70 ntBASIC4.98□□□□□ -1.61
COL8A1P27658 RNU6-701P-201ENST00000384059 107 ntBASIC4.98□□□□□ -1.61
COL8A1P27658 RNU6-1226P-201ENST00000384317 107 ntBASIC4.98□□□□□ -1.61
COL8A1P27658 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC4.98□□□□□ -1.61
COL8A1P27658 AL590704.1-201ENST00000402856 794 ntBASIC4.98□□□□□ -1.61
COL8A1P27658 RNU6ATAC7P-201ENST00000408111 127 ntBASIC4.98□□□□□ -1.61
COL8A1P27658 RNU2-15P-201ENST00000410692 191 ntBASIC4.98□□□□□ -1.61
COL8A1P27658 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC4.98□□□□□ -1.61
COL8A1P27658 AC099677.3-201ENST00000427081 395 ntBASIC4.98□□□□□ -1.61
COL8A1P27658 RAB28P5-201ENST00000427490 651 ntBASIC4.98□□□□□ -1.61
COL8A1P27658 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC4.98□□□□□ -1.61
COL8A1P27658 AL713851.2-201ENST00000431209 332 ntTSL 2 BASIC4.98□□□□□ -1.61
COL8A1P27658 PPIAP13-201ENST00000434706 478 ntBASIC4.98□□□□□ -1.61
COL8A1P27658 RPL23AP33-201ENST00000442301 452 ntBASIC4.98□□□□□ -1.61
COL8A1P27658 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC4.98□□□□□ -1.61
COL8A1P27658 REG1CP-206ENST00000447469 496 ntBASIC4.98□□□□□ -1.61
COL8A1P27658 RN7SL385P-201ENST00000468873 276 ntBASIC4.98□□□□□ -1.61
COL8A1P27658 AC012123.2-201ENST00000485809 248 ntBASIC4.98□□□□□ -1.61
COL8A1P27658 IGLV2-34-201ENST00000490007 283 ntBASIC4.98□□□□□ -1.61
COL8A1P27658 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC4.98□□□□□ -1.61
COL8A1P27658 RNY3P16-201ENST00000516338 101 ntBASIC4.98□□□□□ -1.61
COL8A1P27658 SNORD116-25-201ENST00000516517 92 ntBASIC4.98□□□□□ -1.61
COL8A1P27658 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC4.98□□□□□ -1.61
COL8A1P27658 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC4.98□□□□□ -1.61
COL8A1P27658 AC000068.2-201ENST00000608816 460 ntBASIC4.98□□□□□ -1.61
COL8A1P27658 Y_RNA.802-201ENST00000614892 130 ntBASIC4.98□□□□□ -1.61
COL8A1P27658 ZNF418-212ENST00000616958 2212 ntAPPRIS P3 TSL 1 (best) BASIC4.98□□□□□ -1.61
COL8A1P27658 TEX9-203ENST00000558083 4440 ntTSL 2 BASIC4.98□□□□□ -1.61
COL8A1P27658 MEF2C-225ENST00000625585 3467 ntAPPRIS ALT1 TSL 5 BASIC4.98□□□□□ -1.61
COL8A1P27658 CACNB4-234ENST00000636785 3787 ntTSL 5 BASIC4.98□□□□□ -1.61
COL8A1P27658 TLR5-205ENST00000540964 4088 ntAPPRIS P1 TSL 5 BASIC4.98□□□□□ -1.61
COL8A1P27658 SLC12A1-201ENST00000330289 1764 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
COL8A1P27658 GRIK2-203ENST00000369134 4185 ntTSL 5 BASIC4.98□□□□□ -1.61
COL8A1P27658 PDZRN4-203ENST00000539469 3041 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
COL8A1P27658 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC4.98□□□□□ -1.61
COL8A1P27658 ORC4-214ENST00000535373 6710 ntAPPRIS P1 TSL 5 BASIC4.98□□□□□ -1.61
COL8A1P27658 LRRK2-201ENST00000298910 9158 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
COL8A1P27658 GALNT13-202ENST00000409237 2591 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
COL8A1P27658 MDN1-201ENST00000369393 18413 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
COL8A1P27658 FYB1-204ENST00000505428 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC4.98□□□□□ -1.61
COL8A1P27658 CDC7-201ENST00000234626 3173 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
COL8A1P27658 WDPCP-203ENST00000409120 5408 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
COL8A1P27658 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
COL8A1P27658 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC4.97□□□□□ -1.61
COL8A1P27658 AC010332.2-201ENST00000613083 1904 ntBASIC4.97□□□□□ -1.61
COL8A1P27658 SLC16A4-201ENST00000369779 2632 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
COL8A1P27658 NBPF12-204ENST00000613714 2701 ntTSL 5 BASIC4.97□□□□□ -1.61
COL8A1P27658 ADH6-202ENST00000394897 3337 ntTSL 2 BASIC4.97□□□□□ -1.61
COL8A1P27658 ALG13-203ENST00000394780 4133 ntAPPRIS P1 TSL 2 BASIC4.97□□□□□ -1.61
COL8A1P27658 SEMA3A-201ENST00000265362 8225 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
COL8A1P27658 CAMSAP2-201ENST00000236925 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC4.97□□□□□ -1.61
COL8A1P27658 SPATA31D5P-202ENST00000527857 4863 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
COL8A1P27658 ATP2C1-203ENST00000422190 3386 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
COL8A1P27658 RMDN2-201ENST00000234195 1985 ntTSL 2 BASIC4.97□□□□□ -1.61
COL8A1P27658 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC4.97□□□□□ -1.61
COL8A1P27658 RAPH1-209ENST00000439222 1854 ntAPPRIS ALT2 TSL 5 BASIC4.97□□□□□ -1.61
COL8A1P27658 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
COL8A1P27658 SNORA63.4-201ENST00000362763 126 ntBASIC4.97□□□□□ -1.61
COL8A1P27658 MIR569-201ENST00000385228 96 ntBASIC4.97□□□□□ -1.61
COL8A1P27658 MIR190B-201ENST00000401119 79 ntBASIC4.97□□□□□ -1.61
COL8A1P27658 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC4.97□□□□□ -1.61
COL8A1P27658 AL160275.3-201ENST00000423876 471 ntBASIC4.97□□□□□ -1.61
COL8A1P27658 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC4.97□□□□□ -1.61
COL8A1P27658 AC016712.1-201ENST00000431088 378 ntBASIC4.97□□□□□ -1.61
COL8A1P27658 AC092573.2-201ENST00000434546 243 ntBASIC4.97□□□□□ -1.61
COL8A1P27658 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC4.97□□□□□ -1.61
COL8A1P27658 TBCAP1-201ENST00000436520 327 ntBASIC4.97□□□□□ -1.61
COL8A1P27658 RNU6-1012P-201ENST00000516606 109 ntBASIC4.97□□□□□ -1.61
COL8A1P27658 CYCSP26-201ENST00000534107 320 ntBASIC4.97□□□□□ -1.61
COL8A1P27658 AC007494.1-201ENST00000562293 760 ntBASIC4.97□□□□□ -1.61
COL8A1P27658 AC023824.2-201ENST00000566185 400 ntBASIC4.97□□□□□ -1.61
COL8A1P27658 MIR1254-2-201ENST00000579553 63 ntBASIC4.97□□□□□ -1.61
COL8A1P27658 MIR3684-201ENST00000579779 74 ntBASIC4.97□□□□□ -1.61
COL8A1P27658 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC4.97□□□□□ -1.61
COL8A1P27658 AC084757.4-201ENST00000616350 526 ntBASIC4.97□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 83.7 ms