Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 AL078601.1-201ENST00000444542 271 ntBASIC1.56□□□□□ -2.16
VCANP13611 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC1.56□□□□□ -2.16
VCANP13611 AC005297.2-201ENST00000450430 606 ntBASIC1.56□□□□□ -2.16
VCANP13611 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC1.56□□□□□ -2.16
VCANP13611 SNORA31.24-201ENST00000517232 57 ntBASIC1.56□□□□□ -2.16
VCANP13611 CYP3A137P-201ENST00000562436 69 ntBASIC1.56□□□□□ -2.16
VCANP13611 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC1.56□□□□□ -2.16
VCANP13611 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC1.56□□□□□ -2.16
VCANP13611 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC1.56□□□□□ -2.16
VCANP13611 SNORD48-201ENST00000364953 64 ntBASIC1.56□□□□□ -2.16
VCANP13611 AL445183.3-201ENST00000414168 502 ntBASIC1.56□□□□□ -2.16
VCANP13611 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC1.56□□□□□ -2.16
VCANP13611 NEFMP1-201ENST00000443423 1006 ntBASIC1.56□□□□□ -2.16
VCANP13611 AC090255.1-201ENST00000495779 349 ntBASIC1.56□□□□□ -2.16
VCANP13611 MTCYBP18-201ENST00000501056 747 ntBASIC1.56□□□□□ -2.16
VCANP13611 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC1.56□□□□□ -2.16
VCANP13611 OR6C65-201ENST00000379665 1076 ntAPPRIS P1 BASIC1.55□□□□□ -2.16
VCANP13611 AC092638.1-201ENST00000411966 1275 ntBASIC1.55□□□□□ -2.16
VCANP13611 AIMP1P2-201ENST00000425294 312 ntBASIC1.55□□□□□ -2.16
VCANP13611 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC1.55□□□□□ -2.16
VCANP13611 AL645568.3-201ENST00000433683 316 ntBASIC1.55□□□□□ -2.16
VCANP13611 ARL2BPP4-201ENST00000506854 471 ntBASIC1.55□□□□□ -2.16
VCANP13611 AC034102.8-201ENST00000615146 484 ntBASIC1.55□□□□□ -2.16
VCANP13611 AC095050.2-201ENST00000510748 1458 ntBASIC1.55□□□□□ -2.16
VCANP13611 AL596028.1-201ENST00000326971 197 ntBASIC1.55□□□□□ -2.16
VCANP13611 MIR222-201ENST00000384992 110 ntBASIC1.55□□□□□ -2.16
VCANP13611 AF274854.1-201ENST00000413236 615 ntBASIC1.55□□□□□ -2.16
VCANP13611 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC1.55□□□□□ -2.16
VCANP13611 AC021146.7-201ENST00000509604 775 ntBASIC1.55□□□□□ -2.16
VCANP13611 RN7SKP265-201ENST00000516448 223 ntBASIC1.55□□□□□ -2.16
VCANP13611 CA1-215ENST00000522389 551 ntTSL 3 BASIC1.55□□□□□ -2.16
VCANP13611 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC1.55□□□□□ -2.16
VCANP13611 CMC2-208ENST00000564249 890 ntAPPRIS P1 TSL 5 BASIC1.55□□□□□ -2.16
VCANP13611 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC1.55□□□□□ -2.16
VCANP13611 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC1.55□□□□□ -2.16
VCANP13611 SGO1P2-201ENST00000429458 1589 ntBASIC1.55□□□□□ -2.16
VCANP13611 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.55□□□□□ -2.16
VCANP13611 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC1.55□□□□□ -2.16
VCANP13611 RNU1-133P-201ENST00000364867 167 ntBASIC1.55□□□□□ -2.16
VCANP13611 AL033519.2-201ENST00000403958 392 ntBASIC1.55□□□□□ -2.16
VCANP13611 RPS26P24-201ENST00000497656 331 ntBASIC1.55□□□□□ -2.16
VCANP13611 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC1.55□□□□□ -2.16
VCANP13611 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC1.54□□□□□ -2.16
VCANP13611 AL389895.1-201ENST00000554127 252 ntBASIC1.54□□□□□ -2.16
VCANP13611 AC007687.1-201ENST00000602704 304 ntBASIC1.54□□□□□ -2.16
VCANP13611 SNORA67.6-201ENST00000391093 99 ntBASIC1.54□□□□□ -2.16
VCANP13611 AL139294.1-201ENST00000435739 512 ntTSL 2 BASIC1.54□□□□□ -2.16
VCANP13611 VN1R96P-201ENST00000446052 858 ntBASIC1.54□□□□□ -2.16
VCANP13611 AC079203.1-201ENST00000487972 404 ntBASIC1.54□□□□□ -2.16
VCANP13611 AC008837.2-201ENST00000513076 418 ntBASIC1.54□□□□□ -2.16
VCANP13611 CBX3P8-201ENST00000532412 525 ntBASIC1.54□□□□□ -2.16
VCANP13611 IFNG-AS1-201ENST00000536914 494 ntTSL 5 BASIC1.54□□□□□ -2.16
VCANP13611 AC023813.2-201ENST00000564321 469 ntBASIC1.54□□□□□ -2.16
VCANP13611 AL109933.3-201ENST00000619095 188 ntBASIC1.54□□□□□ -2.16
VCANP13611 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC1.54□□□□□ -2.16
VCANP13611 ZNF679-201ENST00000255746 1297 ntAPPRIS P1 TSL 1 (best) BASIC1.53□□□□□ -2.16
VCANP13611 RPS6P15-201ENST00000431996 751 ntBASIC1.53□□□□□ -2.16
VCANP13611 AC107032.1-201ENST00000485945 480 ntBASIC1.53□□□□□ -2.16
VCANP13611 MTCO3P44-201ENST00000510977 541 ntBASIC1.53□□□□□ -2.16
VCANP13611 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC1.53□□□□□ -2.16
VCANP13611 CD69-203ENST00000536709 1020 ntTSL 2 BASIC1.53□□□□□ -2.16
VCANP13611 KATNBL1P1-201ENST00000605192 748 ntBASIC1.53□□□□□ -2.16
VCANP13611 AC073348.1-201ENST00000623002 331 ntBASIC1.53□□□□□ -2.16
VCANP13611 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.53□□□□□ -2.16
VCANP13611 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC1.53□□□□□ -2.16
VCANP13611 AC025263.3-201ENST00000622965 1396 ntBASIC1.53□□□□□ -2.16
VCANP13611 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC1.53□□□□□ -2.16
VCANP13611 EXTL2P1-201ENST00000446218 416 ntBASIC1.53□□□□□ -2.16
VCANP13611 RPS23P4-201ENST00000487908 423 ntBASIC1.53□□□□□ -2.16
VCANP13611 HMGN1P28-201ENST00000521340 364 ntBASIC1.53□□□□□ -2.16
VCANP13611 AL136298.1-201ENST00000557371 566 ntTSL 3 BASIC1.53□□□□□ -2.16
VCANP13611 MIR3670-2-201ENST00000582974 65 ntBASIC1.53□□□□□ -2.16
VCANP13611 MIR3670-1-201ENST00000584160 65 ntBASIC1.53□□□□□ -2.16
VCANP13611 MIR3670-3-201ENST00000584855 65 ntBASIC1.53□□□□□ -2.16
VCANP13611 AC090525.3-201ENST00000605601 189 ntBASIC1.53□□□□□ -2.16
VCANP13611 MIR3670-4-201ENST00000612260 65 ntBASIC1.53□□□□□ -2.16
VCANP13611 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC1.53□□□□□ -2.16
VCANP13611 AC018630.2-202ENST00000422992 927 ntBASIC1.53□□□□□ -2.17
VCANP13611 AC073310.1-201ENST00000423226 1033 ntBASIC1.53□□□□□ -2.17
VCANP13611 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC1.53□□□□□ -2.17
VCANP13611 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC1.53□□□□□ -2.17
VCANP13611 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC1.53□□□□□ -2.17
VCANP13611 TBCAP3-201ENST00000512475 312 ntBASIC1.53□□□□□ -2.17
VCANP13611 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC1.53□□□□□ -2.17
VCANP13611 AC006557.3-201ENST00000592926 517 ntTSL 3 BASIC1.53□□□□□ -2.17
VCANP13611 AC116447.1-201ENST00000613153 453 ntBASIC1.53□□□□□ -2.17
VCANP13611 ZNF209P-201ENST00000593450 2304 ntBASIC1.52□□□□□ -2.17
VCANP13611 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
VCANP13611 AP001486.2-201ENST00000561652 5113 ntBASIC1.52□□□□□ -2.17
VCANP13611 LINC01673-201ENST00000426418 468 ntTSL 3 BASIC1.52□□□□□ -2.17
VCANP13611 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC1.52□□□□□ -2.17
VCANP13611 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC1.52□□□□□ -2.17
VCANP13611 MTND4P1-201ENST00000457501 1466 ntBASIC1.52□□□□□ -2.17
VCANP13611 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC1.52□□□□□ -2.17
VCANP13611 AC011008.1-201ENST00000522026 439 ntTSL 3 BASIC1.52□□□□□ -2.17
VCANP13611 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC1.52□□□□□ -2.17
VCANP13611 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC1.52□□□□□ -2.17
VCANP13611 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC1.52□□□□□ -2.17
VCANP13611 MTND4P13-201ENST00000402078 1023 ntBASIC1.51□□□□□ -2.17
VCANP13611 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.51□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 169.1 ms