Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
LMX1BO60663 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
LMX1BO60663 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
LMX1BO60663 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.36□□□□□ -1.87
LMX1BO60663 NUP58P1-201ENST00000502546 1738 ntBASIC3.36□□□□□ -1.87
LMX1BO60663 AL118496.1-201ENST00000440201 1812 ntBASIC3.36□□□□□ -1.87
LMX1BO60663 ZNF33BP1-201ENST00000452497 1834 ntBASIC3.36□□□□□ -1.87
LMX1BO60663 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC3.36□□□□□ -1.87
LMX1BO60663 Y_RNA.1-201ENST00000352915 104 ntBASIC3.36□□□□□ -1.87
LMX1BO60663 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
LMX1BO60663 Y_RNA.70-201ENST00000362886 110 ntBASIC3.36□□□□□ -1.87
LMX1BO60663 SNORA72.1-201ENST00000363485 129 ntBASIC3.36□□□□□ -1.87
LMX1BO60663 Y_RNA.159-201ENST00000363674 87 ntBASIC3.36□□□□□ -1.87
LMX1BO60663 RNU6-534P-201ENST00000364877 106 ntBASIC3.36□□□□□ -1.87
LMX1BO60663 Y_RNA.402-201ENST00000383972 102 ntBASIC3.36□□□□□ -1.87
LMX1BO60663 NAP1L1P2-201ENST00000414182 1089 ntBASIC3.36□□□□□ -1.87
LMX1BO60663 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC3.36□□□□□ -1.87
LMX1BO60663 AL353193.1-201ENST00000421444 268 ntBASIC3.36□□□□□ -1.87
LMX1BO60663 AL353777.1-201ENST00000425552 326 ntBASIC3.36□□□□□ -1.87
LMX1BO60663 AL590233.1-201ENST00000430017 456 ntBASIC3.36□□□□□ -1.87
LMX1BO60663 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
LMX1BO60663 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC3.36□□□□□ -1.87
LMX1BO60663 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC3.36□□□□□ -1.87
LMX1BO60663 MTND4P25-201ENST00000441039 533 ntBASIC3.36□□□□□ -1.87
LMX1BO60663 HSPE1P28-201ENST00000443139 211 ntBASIC3.36□□□□□ -1.87
LMX1BO60663 DPPA3P1-201ENST00000448050 469 ntBASIC3.36□□□□□ -1.87
LMX1BO60663 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC3.36□□□□□ -1.87
LMX1BO60663 PRSS3P4-201ENST00000453323 162 ntBASIC3.36□□□□□ -1.87
LMX1BO60663 AC099563.1-201ENST00000456086 418 ntBASIC3.36□□□□□ -1.87
LMX1BO60663 RN7SL93P-201ENST00000463035 293 ntBASIC3.36□□□□□ -1.87
LMX1BO60663 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC3.36□□□□□ -1.87
LMX1BO60663 PPIAP15-201ENST00000479662 484 ntBASIC3.36□□□□□ -1.87
LMX1BO60663 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
LMX1BO60663 AC114781.4-201ENST00000513707 639 ntBASIC3.36□□□□□ -1.87
LMX1BO60663 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC3.36□□□□□ -1.87
LMX1BO60663 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC3.36□□□□□ -1.87
LMX1BO60663 MIR2114-201ENST00000516645 80 ntBASIC3.36□□□□□ -1.87
LMX1BO60663 Y_RNA.704-201ENST00000516851 102 ntBASIC3.36□□□□□ -1.87
LMX1BO60663 RNU6-714P-201ENST00000516963 103 ntBASIC3.36□□□□□ -1.87
LMX1BO60663 AC022616.6-201ENST00000520479 119 ntBASIC3.36□□□□□ -1.87
LMX1BO60663 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC3.36□□□□□ -1.87
LMX1BO60663 CYCSP30-201ENST00000546447 172 ntBASIC3.36□□□□□ -1.87
LMX1BO60663 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC3.36□□□□□ -1.87
LMX1BO60663 AC091516.1-201ENST00000549191 703 ntBASIC3.36□□□□□ -1.87
LMX1BO60663 AL157687.1-201ENST00000554853 619 ntBASIC3.36□□□□□ -1.87
LMX1BO60663 MIR3682-201ENST00000581338 84 ntBASIC3.36□□□□□ -1.87
LMX1BO60663 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC3.36□□□□□ -1.87
LMX1BO60663 AL359999.1-201ENST00000604513 294 ntBASIC3.36□□□□□ -1.87
LMX1BO60663 AL590282.1-201ENST00000610379 1136 ntBASIC3.36□□□□□ -1.87
LMX1BO60663 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
LMX1BO60663 AC012314.7-201ENST00000619693 93 ntBASIC3.36□□□□□ -1.87
LMX1BO60663 AC079684.1-201ENST00000621405 437 ntBASIC3.36□□□□□ -1.87
LMX1BO60663 AC022140.2-201ENST00000623500 188 ntBASIC3.36□□□□□ -1.87
LMX1BO60663 CYP3A51P-201ENST00000633513 256 ntBASIC3.36□□□□□ -1.87
LMX1BO60663 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC3.36□□□□□ -1.87
LMX1BO60663 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.36□□□□□ -1.87
LMX1BO60663 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC3.36□□□□□ -1.87
LMX1BO60663 ELL2P4-201ENST00000446870 1376 ntBASIC3.36□□□□□ -1.87
LMX1BO60663 AC138915.3-201ENST00000562908 1389 ntBASIC3.36□□□□□ -1.87
LMX1BO60663 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
LMX1BO60663 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
LMX1BO60663 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
LMX1BO60663 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
LMX1BO60663 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.35□□□□□ -1.87
LMX1BO60663 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
LMX1BO60663 MTND5P33-201ENST00000571250 1450 ntBASIC3.35□□□□□ -1.87
LMX1BO60663 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC3.35□□□□□ -1.87
LMX1BO60663 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC3.35□□□□□ -1.87
LMX1BO60663 LPAR4-201ENST00000435339 2611 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
LMX1BO60663 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC3.35□□□□□ -1.87
LMX1BO60663 RNA5SP119-201ENST00000362715 117 ntBASIC3.35□□□□□ -1.87
LMX1BO60663 RNA5SP124-201ENST00000362739 110 ntBASIC3.35□□□□□ -1.87
LMX1BO60663 Y_RNA.89-201ENST00000363031 102 ntBASIC3.35□□□□□ -1.87
LMX1BO60663 RNU6-181P-201ENST00000363225 107 ntBASIC3.35□□□□□ -1.87
LMX1BO60663 RNU6-213P-201ENST00000384051 104 ntBASIC3.35□□□□□ -1.87
LMX1BO60663 MIR30B-201ENST00000384850 88 ntBASIC3.35□□□□□ -1.87
LMX1BO60663 MTND4LP20-201ENST00000402379 270 ntBASIC3.35□□□□□ -1.87
LMX1BO60663 RPS3AP24-201ENST00000407896 734 ntBASIC3.35□□□□□ -1.87
LMX1BO60663 RN7SKP156-201ENST00000410308 342 ntBASIC3.35□□□□□ -1.87
LMX1BO60663 AC069218.2-201ENST00000411665 344 ntBASIC3.35□□□□□ -1.87
LMX1BO60663 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
LMX1BO60663 AMD1P2-201ENST00000412936 992 ntBASIC3.35□□□□□ -1.87
LMX1BO60663 MTCO2P5-201ENST00000422621 426 ntBASIC3.35□□□□□ -1.87
LMX1BO60663 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC3.35□□□□□ -1.87
LMX1BO60663 ELOCP14-201ENST00000428070 331 ntBASIC3.35□□□□□ -1.87
LMX1BO60663 OR4F13P-201ENST00000428478 931 ntBASIC3.35□□□□□ -1.87
LMX1BO60663 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC3.35□□□□□ -1.87
LMX1BO60663 ELOCP7-201ENST00000439968 331 ntBASIC3.35□□□□□ -1.87
LMX1BO60663 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC3.35□□□□□ -1.87
LMX1BO60663 AL645939.1-201ENST00000453429 797 ntBASIC3.35□□□□□ -1.87
LMX1BO60663 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC3.35□□□□□ -1.87
LMX1BO60663 AC104563.1-201ENST00000476147 376 ntBASIC3.35□□□□□ -1.87
LMX1BO60663 FAM172BP-201ENST00000487497 1089 ntBASIC3.35□□□□□ -1.87
LMX1BO60663 MTCYBP18-201ENST00000501056 747 ntBASIC3.35□□□□□ -1.87
LMX1BO60663 THAP6-203ENST00000502620 582 ntTSL 3 BASIC3.35□□□□□ -1.87
LMX1BO60663 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
LMX1BO60663 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC3.35□□□□□ -1.87
LMX1BO60663 AC098799.2-201ENST00000509466 868 ntBASIC3.35□□□□□ -1.87
LMX1BO60663 EGFLAM-AS2-201ENST00000512603 466 ntTSL 5 BASIC3.35□□□□□ -1.87
LMX1BO60663 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC3.35□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 92.8 ms