Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC3.83□□□□□ -1.8
HOXC11O43248 TXNP1-201ENST00000441872 371 ntBASIC3.83□□□□□ -1.8
HOXC11O43248 ELOCP30-201ENST00000447108 299 ntBASIC3.83□□□□□ -1.8
HOXC11O43248 AC006480.1-201ENST00000449887 378 ntBASIC3.83□□□□□ -1.8
HOXC11O43248 AC099563.1-201ENST00000456086 418 ntBASIC3.83□□□□□ -1.8
HOXC11O43248 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC3.83□□□□□ -1.8
HOXC11O43248 SNORD105B-201ENST00000458770 79 ntBASIC3.83□□□□□ -1.8
HOXC11O43248 AC010468.1-201ENST00000461022 817 ntBASIC3.83□□□□□ -1.8
HOXC11O43248 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC3.83□□□□□ -1.8
HOXC11O43248 OR5BM1P-201ENST00000512021 366 ntBASIC3.83□□□□□ -1.8
HOXC11O43248 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC3.83□□□□□ -1.8
HOXC11O43248 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
HOXC11O43248 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC3.83□□□□□ -1.8
HOXC11O43248 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC3.83□□□□□ -1.8
HOXC11O43248 OR4H12P-201ENST00000556269 907 ntBASIC3.83□□□□□ -1.8
HOXC11O43248 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.83□□□□□ -1.8
HOXC11O43248 ACTR3BP3-201ENST00000565577 979 ntBASIC3.83□□□□□ -1.8
HOXC11O43248 AL356432.3-201ENST00000568952 465 ntBASIC3.83□□□□□ -1.8
HOXC11O43248 AC012065.4-201ENST00000602445 679 ntBASIC3.83□□□□□ -1.8
HOXC11O43248 U3.45-201ENST00000607547 219 ntBASIC3.83□□□□□ -1.8
HOXC11O43248 AL355472.4-201ENST00000610233 626 ntBASIC3.83□□□□□ -1.8
HOXC11O43248 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC3.83□□□□□ -1.8
HOXC11O43248 AC009159.1-201ENST00000618386 642 ntBASIC3.83□□□□□ -1.8
HOXC11O43248 CU459211.1-201ENST00000635667 749 ntBASIC3.83□□□□□ -1.8
HOXC11O43248 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
HOXC11O43248 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
HOXC11O43248 AC008568.2-201ENST00000623862 2313 ntBASIC3.83□□□□□ -1.8
HOXC11O43248 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC3.83□□□□□ -1.8
HOXC11O43248 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
HOXC11O43248 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC3.83□□□□□ -1.8
HOXC11O43248 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
HOXC11O43248 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC3.83□□□□□ -1.8
HOXC11O43248 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
HOXC11O43248 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.82□□□□□ -1.8
HOXC11O43248 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC3.82□□□□□ -1.8
HOXC11O43248 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
HOXC11O43248 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC3.82□□□□□ -1.8
HOXC11O43248 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC3.82□□□□□ -1.8
HOXC11O43248 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC3.82□□□□□ -1.8
HOXC11O43248 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC3.82□□□□□ -1.8
HOXC11O43248 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
HOXC11O43248 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
HOXC11O43248 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC3.82□□□□□ -1.8
HOXC11O43248 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC3.82□□□□□ -1.8
HOXC11O43248 RNU5A-8P-201ENST00000364102 114 ntBASIC3.82□□□□□ -1.8
HOXC11O43248 RNA5SP424-201ENST00000390988 115 ntBASIC3.82□□□□□ -1.8
HOXC11O43248 FCF1P10-201ENST00000407590 479 ntBASIC3.82□□□□□ -1.8
HOXC11O43248 MIR1302-8-201ENST00000408342 128 ntBASIC3.82□□□□□ -1.8
HOXC11O43248 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC3.82□□□□□ -1.8
HOXC11O43248 AC013401.1-202ENST00000422017 626 ntTSL 2 BASIC3.82□□□□□ -1.8
HOXC11O43248 RPL21P109-201ENST00000422213 475 ntBASIC3.82□□□□□ -1.8
HOXC11O43248 CYCSP46-201ENST00000423569 204 ntBASIC3.82□□□□□ -1.8
HOXC11O43248 AL353777.1-201ENST00000425552 326 ntBASIC3.82□□□□□ -1.8
HOXC11O43248 AL590383.1-201ENST00000428602 75 ntBASIC3.82□□□□□ -1.8
HOXC11O43248 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC3.82□□□□□ -1.8
HOXC11O43248 ARF4P2-201ENST00000430209 526 ntBASIC3.82□□□□□ -1.8
HOXC11O43248 AL049734.2-201ENST00000441066 616 ntBASIC3.82□□□□□ -1.8
HOXC11O43248 TRIM60P18-201ENST00000441518 828 ntBASIC3.82□□□□□ -1.8
HOXC11O43248 MTND2P22-201ENST00000444325 1033 ntBASIC3.82□□□□□ -1.8
HOXC11O43248 COX6CP2-201ENST00000444980 225 ntBASIC3.82□□□□□ -1.8
HOXC11O43248 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC3.82□□□□□ -1.8
HOXC11O43248 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC3.82□□□□□ -1.8
HOXC11O43248 SNRPGP9-201ENST00000456025 225 ntBASIC3.82□□□□□ -1.8
HOXC11O43248 AC069499.1-201ENST00000489433 509 ntBASIC3.82□□□□□ -1.8
HOXC11O43248 AL049874.1-201ENST00000489560 388 ntBASIC3.82□□□□□ -1.8
HOXC11O43248 AC114967.1-201ENST00000504890 259 ntBASIC3.82□□□□□ -1.8
HOXC11O43248 AC110768.1-201ENST00000509222 400 ntBASIC3.82□□□□□ -1.8
HOXC11O43248 AC026726.1-201ENST00000512859 601 ntBASIC3.82□□□□□ -1.8
HOXC11O43248 RNA5SP208-201ENST00000516156 78 ntBASIC3.82□□□□□ -1.8
HOXC11O43248 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC3.82□□□□□ -1.8
HOXC11O43248 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC3.82□□□□□ -1.8
HOXC11O43248 AP002373.1-201ENST00000544347 729 ntAPPRIS P1 TSL 3 BASIC3.82□□□□□ -1.8
HOXC11O43248 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC3.82□□□□□ -1.8
HOXC11O43248 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
HOXC11O43248 ZNF519P3-201ENST00000557158 1032 ntBASIC3.82□□□□□ -1.8
HOXC11O43248 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC3.82□□□□□ -1.8
HOXC11O43248 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC3.82□□□□□ -1.8
HOXC11O43248 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC3.82□□□□□ -1.8
HOXC11O43248 Z94722.1-201ENST00000604328 474 ntBASIC3.82□□□□□ -1.8
HOXC11O43248 AC068276.1-201ENST00000605793 379 ntBASIC3.82□□□□□ -1.8
HOXC11O43248 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC3.82□□□□□ -1.8
HOXC11O43248 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.82□□□□□ -1.8
HOXC11O43248 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
HOXC11O43248 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
HOXC11O43248 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.81□□□□□ -1.8
HOXC11O43248 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
HOXC11O43248 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC3.81□□□□□ -1.8
HOXC11O43248 AL049781.1-201ENST00000623195 3585 ntBASIC3.81□□□□□ -1.8
HOXC11O43248 RNU4-21P-201ENST00000362802 126 ntBASIC3.81□□□□□ -1.8
HOXC11O43248 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
HOXC11O43248 SNORA36C-201ENST00000384289 132 ntBASIC3.81□□□□□ -1.8
HOXC11O43248 RNY3P10-201ENST00000384764 102 ntBASIC3.81□□□□□ -1.8
HOXC11O43248 MIR183-201ENST00000384958 110 ntBASIC3.81□□□□□ -1.8
HOXC11O43248 SNORD115.1-201ENST00000391109 76 ntBASIC3.81□□□□□ -1.8
HOXC11O43248 AC009237.5-201ENST00000414271 501 ntBASIC3.81□□□□□ -1.8
HOXC11O43248 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC3.81□□□□□ -1.8
HOXC11O43248 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC3.81□□□□□ -1.8
HOXC11O43248 AL356583.2-201ENST00000426536 280 ntBASIC3.81□□□□□ -1.8
HOXC11O43248 AC244035.1-201ENST00000430042 390 ntBASIC3.81□□□□□ -1.8
HOXC11O43248 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC3.81□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 99.7 ms