Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 U3.36-201ENST00000408418 213 ntBASIC5.5□□□□□ -1.53
USP3Q9Y6I4 AL030996.1-201ENST00000411430 235 ntBASIC5.5□□□□□ -1.53
USP3Q9Y6I4 AC079809.1-201ENST00000415468 276 ntBASIC5.5□□□□□ -1.53
USP3Q9Y6I4 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC5.5□□□□□ -1.53
USP3Q9Y6I4 LAMTOR3P1-201ENST00000428620 370 ntBASIC5.5□□□□□ -1.53
USP3Q9Y6I4 RPL19P16-201ENST00000433839 588 ntBASIC5.5□□□□□ -1.53
USP3Q9Y6I4 AC009127.1-201ENST00000467090 155 ntBASIC5.5□□□□□ -1.53
USP3Q9Y6I4 RN7SL814P-201ENST00000487715 300 ntBASIC5.5□□□□□ -1.53
USP3Q9Y6I4 AC022133.1-201ENST00000490961 571 ntBASIC5.5□□□□□ -1.53
USP3Q9Y6I4 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC5.5□□□□□ -1.53
USP3Q9Y6I4 SNORA31.3-201ENST00000516029 96 ntBASIC5.5□□□□□ -1.53
USP3Q9Y6I4 IGKV2D-36-201ENST00000518643 226 ntBASIC5.5□□□□□ -1.53
USP3Q9Y6I4 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC5.5□□□□□ -1.53
USP3Q9Y6I4 CLMN-206ENST00000556441 452 ntTSL 5 BASIC5.5□□□□□ -1.53
USP3Q9Y6I4 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC5.5□□□□□ -1.53
USP3Q9Y6I4 RNU6-85P-201ENST00000605989 107 ntBASIC5.5□□□□□ -1.53
USP3Q9Y6I4 AC006023.2-201ENST00000609916 167 ntBASIC5.5□□□□□ -1.53
USP3Q9Y6I4 AL161616.1-201ENST00000611867 286 ntBASIC5.5□□□□□ -1.53
USP3Q9Y6I4 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
USP3Q9Y6I4 MIR6839-201ENST00000620425 113 ntBASIC5.5□□□□□ -1.53
USP3Q9Y6I4 CCT5-215ENST00000625723 135 ntTSL 5 BASIC5.5□□□□□ -1.53
USP3Q9Y6I4 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
USP3Q9Y6I4 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
USP3Q9Y6I4 ADAMDEC1-204ENST00000522298 2044 ntAPPRIS ALT2 TSL 2 BASIC5.5□□□□□ -1.53
USP3Q9Y6I4 FGF1-215ENST00000619447 3818 ntAPPRIS P1 TSL 4 BASIC5.5□□□□□ -1.53
USP3Q9Y6I4 CRB1-203ENST00000367400 4932 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
USP3Q9Y6I4 CALN1-203ENST00000395276 9189 ntAPPRIS P3 TSL 1 (best) BASIC5.5□□□□□ -1.53
USP3Q9Y6I4 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC5.5□□□□□ -1.53
USP3Q9Y6I4 AP001284.1-201ENST00000528393 2118 ntBASIC5.5□□□□□ -1.53
USP3Q9Y6I4 OR10A6-204ENST00000642108 6104 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
USP3Q9Y6I4 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
USP3Q9Y6I4 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
USP3Q9Y6I4 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC5.49□□□□□ -1.53
USP3Q9Y6I4 SOX2-OT-218ENST00000498731 3576 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
USP3Q9Y6I4 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC5.49□□□□□ -1.53
USP3Q9Y6I4 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC5.49□□□□□ -1.53
USP3Q9Y6I4 CCAR1-217ENST00000543719 3521 ntTSL 5 BASIC5.49□□□□□ -1.53
USP3Q9Y6I4 RPL23P2-201ENST00000320371 421 ntBASIC5.49□□□□□ -1.53
USP3Q9Y6I4 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC5.49□□□□□ -1.53
USP3Q9Y6I4 RNU6-371P-201ENST00000364283 108 ntBASIC5.49□□□□□ -1.53
USP3Q9Y6I4 MIR589-201ENST00000385238 99 ntBASIC5.49□□□□□ -1.53
USP3Q9Y6I4 MIR765-201ENST00000390226 114 ntBASIC5.49□□□□□ -1.53
USP3Q9Y6I4 AL109941.1-201ENST00000401925 229 ntBASIC5.49□□□□□ -1.53
USP3Q9Y6I4 AL590999.1-205ENST00000420293 440 ntTSL 3 BASIC5.49□□□□□ -1.53
USP3Q9Y6I4 PIGPP3-201ENST00000425307 415 ntBASIC5.49□□□□□ -1.53
USP3Q9Y6I4 HMGB1P27-201ENST00000431429 603 ntBASIC5.49□□□□□ -1.53
USP3Q9Y6I4 AL353997.1-201ENST00000432936 108 ntBASIC5.49□□□□□ -1.53
USP3Q9Y6I4 MTND5P15-201ENST00000434246 349 ntBASIC5.49□□□□□ -1.53
USP3Q9Y6I4 RNU6ATAC28P-201ENST00000459249 118 ntBASIC5.49□□□□□ -1.53
USP3Q9Y6I4 SNRPCP3-201ENST00000474888 476 ntBASIC5.49□□□□□ -1.53
USP3Q9Y6I4 TRBVB-201ENST00000477100 408 ntBASIC5.49□□□□□ -1.53
USP3Q9Y6I4 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC5.49□□□□□ -1.53
USP3Q9Y6I4 AC010261.2-201ENST00000515563 588 ntTSL 2 BASIC5.49□□□□□ -1.53
USP3Q9Y6I4 LINC01619-209ENST00000552277 571 ntTSL 4 BASIC5.49□□□□□ -1.53
USP3Q9Y6I4 AC011447.4-201ENST00000587562 111 ntBASIC5.49□□□□□ -1.53
USP3Q9Y6I4 OR1M4P-201ENST00000589199 287 ntBASIC5.49□□□□□ -1.53
USP3Q9Y6I4 AL159153.1-201ENST00000619688 317 ntBASIC5.49□□□□□ -1.53
USP3Q9Y6I4 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
USP3Q9Y6I4 BTBD10P1-201ENST00000549824 1352 ntBASIC5.49□□□□□ -1.53
USP3Q9Y6I4 EMSY-201ENST00000334736 5508 ntAPPRIS P3 TSL 5 BASIC5.49□□□□□ -1.53
USP3Q9Y6I4 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
USP3Q9Y6I4 IRF5P1-201ENST00000504852 2164 ntBASIC5.49□□□□□ -1.53
USP3Q9Y6I4 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC5.49□□□□□ -1.53
USP3Q9Y6I4 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
USP3Q9Y6I4 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC5.49□□□□□ -1.53
USP3Q9Y6I4 UNC5C-205ENST00000610318 9403 ntTSL 5 BASIC5.49□□□□□ -1.53
USP3Q9Y6I4 WDPCP-203ENST00000409120 5408 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
USP3Q9Y6I4 POLK-210ENST00000508526 2019 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
USP3Q9Y6I4 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC5.48□□□□□ -1.53
USP3Q9Y6I4 OR5AS1-202ENST00000641320 7860 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
USP3Q9Y6I4 DSC2-202ENST00000280904 12325 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
USP3Q9Y6I4 LINC02225-201ENST00000510444 4069 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
USP3Q9Y6I4 IFIT1-201ENST00000371804 1880 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
USP3Q9Y6I4 AC023421.1-201ENST00000590535 1785 ntBASIC5.48□□□□□ -1.53
USP3Q9Y6I4 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC5.48□□□□□ -1.53
USP3Q9Y6I4 MUC17-201ENST00000306151 14247 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
USP3Q9Y6I4 RNU6-212P-201ENST00000362642 104 ntBASIC5.48□□□□□ -1.53
USP3Q9Y6I4 RNU6-989P-201ENST00000362756 107 ntBASIC5.48□□□□□ -1.53
USP3Q9Y6I4 Y_RNA.64-201ENST00000362845 102 ntBASIC5.48□□□□□ -1.53
USP3Q9Y6I4 Y_RNA.180-201ENST00000363867 113 ntBASIC5.48□□□□□ -1.53
USP3Q9Y6I4 Y_RNA.477-201ENST00000384352 108 ntBASIC5.48□□□□□ -1.53
USP3Q9Y6I4 RNU1-106P-201ENST00000384382 164 ntBASIC5.48□□□□□ -1.53
USP3Q9Y6I4 RNU6-14P-201ENST00000384630 106 ntBASIC5.48□□□□□ -1.53
USP3Q9Y6I4 MIR600-201ENST00000385007 98 ntBASIC5.48□□□□□ -1.53
USP3Q9Y6I4 MRM2-202ENST00000407040 582 ntTSL 3 BASIC5.48□□□□□ -1.53
USP3Q9Y6I4 RNA5SP56-201ENST00000410277 118 ntBASIC5.48□□□□□ -1.53
USP3Q9Y6I4 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC5.48□□□□□ -1.53
USP3Q9Y6I4 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC5.48□□□□□ -1.53
USP3Q9Y6I4 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC5.48□□□□□ -1.53
USP3Q9Y6I4 RPS3AP46-201ENST00000448352 682 ntBASIC5.48□□□□□ -1.53
USP3Q9Y6I4 RN7SL515P-201ENST00000463999 297 ntBASIC5.48□□□□□ -1.53
USP3Q9Y6I4 NDUFB4P9-201ENST00000511646 388 ntBASIC5.48□□□□□ -1.53
USP3Q9Y6I4 Y_RNA.687-201ENST00000516558 91 ntBASIC5.48□□□□□ -1.53
USP3Q9Y6I4 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC5.48□□□□□ -1.53
USP3Q9Y6I4 AC104576.1-201ENST00000524225 88 ntBASIC5.48□□□□□ -1.53
USP3Q9Y6I4 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC5.48□□□□□ -1.53
USP3Q9Y6I4 AL049839.1-201ENST00000556151 657 ntBASIC5.48□□□□□ -1.53
USP3Q9Y6I4 LRRC37A5P-203ENST00000580181 585 ntBASIC5.48□□□□□ -1.53
USP3Q9Y6I4 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC5.48□□□□□ -1.53
USP3Q9Y6I4 AL031601.2-202ENST00000622650 282 ntBASIC5.48□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 97.9 ms