Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC5.96□□□□□ -1.45
CHMP3Q9Y3E7 ZNF519P1-201ENST00000449011 1626 ntBASIC5.96□□□□□ -1.45
CHMP3Q9Y3E7 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC5.96□□□□□ -1.46
CHMP3Q9Y3E7 ELOVL7-203ENST00000505959 4165 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
CHMP3Q9Y3E7 PCAT14-202ENST00000627127 3935 ntBASIC5.96□□□□□ -1.46
CHMP3Q9Y3E7 RNU6-82P-201ENST00000363970 107 ntBASIC5.96□□□□□ -1.46
CHMP3Q9Y3E7 RNU5E-6P-201ENST00000365574 115 ntBASIC5.96□□□□□ -1.46
CHMP3Q9Y3E7 RNA5SP332-201ENST00000391063 115 ntBASIC5.96□□□□□ -1.46
CHMP3Q9Y3E7 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC5.96□□□□□ -1.46
CHMP3Q9Y3E7 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC5.96□□□□□ -1.46
CHMP3Q9Y3E7 AC009220.1-201ENST00000451614 275 ntBASIC5.96□□□□□ -1.46
CHMP3Q9Y3E7 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC5.96□□□□□ -1.46
CHMP3Q9Y3E7 CREM-238ENST00000488741 651 ntTSL 2 BASIC5.96□□□□□ -1.46
CHMP3Q9Y3E7 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC5.96□□□□□ -1.46
CHMP3Q9Y3E7 MEPE-206ENST00000511670 550 ntTSL 4 BASIC5.96□□□□□ -1.46
CHMP3Q9Y3E7 RNU4ATAC10P-201ENST00000516967 122 ntBASIC5.96□□□□□ -1.46
CHMP3Q9Y3E7 AC107918.3-201ENST00000533272 382 ntBASIC5.96□□□□□ -1.46
CHMP3Q9Y3E7 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC5.96□□□□□ -1.46
CHMP3Q9Y3E7 GSTP1P1-201ENST00000548078 319 ntBASIC5.96□□□□□ -1.46
CHMP3Q9Y3E7 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC5.96□□□□□ -1.46
CHMP3Q9Y3E7 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC5.96□□□□□ -1.46
CHMP3Q9Y3E7 AL008729.2-201ENST00000606393 473 ntBASIC5.96□□□□□ -1.46
CHMP3Q9Y3E7 AC133104.2-201ENST00000615272 193 ntBASIC5.96□□□□□ -1.46
CHMP3Q9Y3E7 AL162373.1-201ENST00000620433 407 ntBASIC5.96□□□□□ -1.46
CHMP3Q9Y3E7 AL732372.2-225ENST00000642124 456 ntBASIC5.96□□□□□ -1.46
CHMP3Q9Y3E7 AC106895.2-201ENST00000511291 1824 ntTSL 3 BASIC5.96□□□□□ -1.46
CHMP3Q9Y3E7 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
CHMP3Q9Y3E7 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC5.96□□□□□ -1.46
CHMP3Q9Y3E7 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC5.96□□□□□ -1.46
CHMP3Q9Y3E7 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC5.96□□□□□ -1.46
CHMP3Q9Y3E7 ALB-201ENST00000295897 2263 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
CHMP3Q9Y3E7 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC5.96□□□□□ -1.46
CHMP3Q9Y3E7 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC5.96□□□□□ -1.46
CHMP3Q9Y3E7 ZNF273-204ENST00000476120 2000 ntAPPRIS P1 TSL 3 BASIC5.96□□□□□ -1.46
CHMP3Q9Y3E7 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC5.96□□□□□ -1.46
CHMP3Q9Y3E7 CDC27P3-201ENST00000635418 1910 ntBASIC5.95□□□□□ -1.46
CHMP3Q9Y3E7 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC5.95□□□□□ -1.46
CHMP3Q9Y3E7 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
CHMP3Q9Y3E7 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
CHMP3Q9Y3E7 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
CHMP3Q9Y3E7 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
CHMP3Q9Y3E7 FAP-203ENST00000443424 2598 ntTSL 2 BASIC5.95□□□□□ -1.46
CHMP3Q9Y3E7 Y_RNA.188-201ENST00000363952 111 ntBASIC5.95□□□□□ -1.46
CHMP3Q9Y3E7 SNORA63.7-201ENST00000365579 123 ntBASIC5.95□□□□□ -1.46
CHMP3Q9Y3E7 RNU6-890P-201ENST00000384121 107 ntBASIC5.95□□□□□ -1.46
CHMP3Q9Y3E7 Y_RNA.473-201ENST00000384333 102 ntBASIC5.95□□□□□ -1.46
CHMP3Q9Y3E7 MT-TG-201ENST00000387429 68 ntBASIC5.95□□□□□ -1.46
CHMP3Q9Y3E7 EIF4E2P1-201ENST00000393781 255 ntBASIC5.95□□□□□ -1.46
CHMP3Q9Y3E7 RNA5SP107-201ENST00000411358 122 ntBASIC5.95□□□□□ -1.46
CHMP3Q9Y3E7 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC5.95□□□□□ -1.46
CHMP3Q9Y3E7 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC5.95□□□□□ -1.46
CHMP3Q9Y3E7 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC5.95□□□□□ -1.46
CHMP3Q9Y3E7 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC5.95□□□□□ -1.46
CHMP3Q9Y3E7 RPL23AP89-201ENST00000439324 255 ntBASIC5.95□□□□□ -1.46
CHMP3Q9Y3E7 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC5.95□□□□□ -1.46
CHMP3Q9Y3E7 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC5.95□□□□□ -1.46
CHMP3Q9Y3E7 CEACAMP6-201ENST00000452007 574 ntBASIC5.95□□□□□ -1.46
CHMP3Q9Y3E7 RPL10P17-201ENST00000453852 316 ntBASIC5.95□□□□□ -1.46
CHMP3Q9Y3E7 RN7SL517P-201ENST00000462240 305 ntBASIC5.95□□□□□ -1.46
CHMP3Q9Y3E7 AC022034.3-201ENST00000471393 478 ntBASIC5.95□□□□□ -1.46
CHMP3Q9Y3E7 KRTAP5-14P-201ENST00000502328 121 ntBASIC5.95□□□□□ -1.46
CHMP3Q9Y3E7 COX7A2P2-201ENST00000505291 250 ntBASIC5.95□□□□□ -1.46
CHMP3Q9Y3E7 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC5.95□□□□□ -1.46
CHMP3Q9Y3E7 AC008526.1-201ENST00000509149 338 ntBASIC5.95□□□□□ -1.46
CHMP3Q9Y3E7 AC016065.2-201ENST00000514530 444 ntBASIC5.95□□□□□ -1.46
CHMP3Q9Y3E7 RFPL4AP5-201ENST00000514977 504 ntBASIC5.95□□□□□ -1.46
CHMP3Q9Y3E7 RNU1-6P-201ENST00000516290 144 ntBASIC5.95□□□□□ -1.46
CHMP3Q9Y3E7 RNU6-1271P-201ENST00000517049 105 ntBASIC5.95□□□□□ -1.46
CHMP3Q9Y3E7 Y_RNA.719-201ENST00000517156 106 ntBASIC5.95□□□□□ -1.46
CHMP3Q9Y3E7 IGKV1-32-201ENST00000519290 311 ntBASIC5.95□□□□□ -1.46
CHMP3Q9Y3E7 RAB9BP1-201ENST00000519581 626 ntBASIC5.95□□□□□ -1.46
CHMP3Q9Y3E7 AC005868.1-201ENST00000536421 331 ntBASIC5.95□□□□□ -1.46
CHMP3Q9Y3E7 AL161670.1-201ENST00000554348 137 ntBASIC5.95□□□□□ -1.46
CHMP3Q9Y3E7 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC5.95□□□□□ -1.46
CHMP3Q9Y3E7 MIR4293-201ENST00000584305 78 ntBASIC5.95□□□□□ -1.46
CHMP3Q9Y3E7 BNIP3P16-201ENST00000589779 534 ntBASIC5.95□□□□□ -1.46
CHMP3Q9Y3E7 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC5.95□□□□□ -1.46
CHMP3Q9Y3E7 AC092608.2-201ENST00000624427 218 ntBASIC5.95□□□□□ -1.46
CHMP3Q9Y3E7 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
CHMP3Q9Y3E7 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC5.95□□□□□ -1.46
CHMP3Q9Y3E7 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC5.95□□□□□ -1.46
CHMP3Q9Y3E7 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
CHMP3Q9Y3E7 ZNF734P-201ENST00000419494 1534 ntBASIC5.94□□□□□ -1.46
CHMP3Q9Y3E7 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC5.94□□□□□ -1.46
CHMP3Q9Y3E7 AL672167.1-205ENST00000641112 3080 ntBASIC5.94□□□□□ -1.46
CHMP3Q9Y3E7 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
CHMP3Q9Y3E7 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC5.94□□□□□ -1.46
CHMP3Q9Y3E7 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC5.94□□□□□ -1.46
CHMP3Q9Y3E7 RNU1-130P-201ENST00000363930 160 ntBASIC5.94□□□□□ -1.46
CHMP3Q9Y3E7 Y_RNA.364-201ENST00000365532 101 ntBASIC5.94□□□□□ -1.46
CHMP3Q9Y3E7 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC5.94□□□□□ -1.46
CHMP3Q9Y3E7 MIR141-201ENST00000384975 95 ntBASIC5.94□□□□□ -1.46
CHMP3Q9Y3E7 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC5.94□□□□□ -1.46
CHMP3Q9Y3E7 RNA5SP219-201ENST00000390940 113 ntBASIC5.94□□□□□ -1.46
CHMP3Q9Y3E7 RNU6-550P-201ENST00000391057 101 ntBASIC5.94□□□□□ -1.46
CHMP3Q9Y3E7 SNORA68.2-201ENST00000391263 128 ntBASIC5.94□□□□□ -1.46
CHMP3Q9Y3E7 SOD2P1-201ENST00000396543 562 ntBASIC5.94□□□□□ -1.46
CHMP3Q9Y3E7 Y_RNA.618-201ENST00000410949 107 ntBASIC5.94□□□□□ -1.46
CHMP3Q9Y3E7 AL645608.4-201ENST00000423619 154 ntBASIC5.94□□□□□ -1.46
CHMP3Q9Y3E7 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC5.94□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 85.5 ms