Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 RPL7L1P10-201ENST00000427790 463 ntBASIC5.35□□□□□ -1.55
CCDC39Q9UFE4 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC5.35□□□□□ -1.55
CCDC39Q9UFE4 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC5.35□□□□□ -1.55
CCDC39Q9UFE4 CLEC5A-203ENST00000439991 501 ntTSL 3 BASIC5.35□□□□□ -1.55
CCDC39Q9UFE4 TRAPPC2P3-201ENST00000443200 321 ntBASIC5.35□□□□□ -1.55
CCDC39Q9UFE4 RPL7P52-201ENST00000449200 742 ntBASIC5.35□□□□□ -1.55
CCDC39Q9UFE4 RPS20P21-201ENST00000466859 343 ntBASIC5.35□□□□□ -1.55
CCDC39Q9UFE4 RPL31P50-201ENST00000471002 296 ntBASIC5.35□□□□□ -1.55
CCDC39Q9UFE4 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC5.35□□□□□ -1.55
CCDC39Q9UFE4 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC5.35□□□□□ -1.55
CCDC39Q9UFE4 RNU6-566P-201ENST00000516790 107 ntBASIC5.35□□□□□ -1.55
CCDC39Q9UFE4 COX6B1P6-201ENST00000522347 255 ntBASIC5.35□□□□□ -1.55
CCDC39Q9UFE4 COX6CP8-201ENST00000522620 226 ntBASIC5.35□□□□□ -1.55
CCDC39Q9UFE4 AC021006.3-201ENST00000530771 192 ntBASIC5.35□□□□□ -1.55
CCDC39Q9UFE4 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC39Q9UFE4 ZNF84-212ENST00000542874 540 ntTSL 5 BASIC5.35□□□□□ -1.55
CCDC39Q9UFE4 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC5.35□□□□□ -1.55
CCDC39Q9UFE4 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC5.35□□□□□ -1.55
CCDC39Q9UFE4 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC5.35□□□□□ -1.55
CCDC39Q9UFE4 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC5.35□□□□□ -1.55
CCDC39Q9UFE4 AC018552.3-201ENST00000567416 561 ntBASIC5.35□□□□□ -1.55
CCDC39Q9UFE4 MIR4790-201ENST00000577799 79 ntBASIC5.35□□□□□ -1.55
CCDC39Q9UFE4 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC5.35□□□□□ -1.55
CCDC39Q9UFE4 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC5.35□□□□□ -1.55
CCDC39Q9UFE4 CR381572.1-201ENST00000625098 102 ntBASIC5.35□□□□□ -1.55
CCDC39Q9UFE4 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC5.35□□□□□ -1.55
CCDC39Q9UFE4 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC5.35□□□□□ -1.55
CCDC39Q9UFE4 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC39Q9UFE4 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.55
CCDC39Q9UFE4 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC5.34□□□□□ -1.55
CCDC39Q9UFE4 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
CCDC39Q9UFE4 MTND5P30-201ENST00000452896 1731 ntBASIC5.34□□□□□ -1.55
CCDC39Q9UFE4 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
CCDC39Q9UFE4 NAP1L1-204ENST00000535020 1686 ntTSL 2 BASIC5.34□□□□□ -1.55
CCDC39Q9UFE4 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
CCDC39Q9UFE4 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
CCDC39Q9UFE4 LINC01619-203ENST00000549802 2169 ntTSL 2 BASIC5.34□□□□□ -1.55
CCDC39Q9UFE4 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC5.34□□□□□ -1.55
CCDC39Q9UFE4 MIR93-201ENST00000385024 80 ntBASIC5.34□□□□□ -1.55
CCDC39Q9UFE4 MIR105-2-201ENST00000385083 81 ntBASIC5.34□□□□□ -1.55
CCDC39Q9UFE4 AL590762.2-201ENST00000395798 571 ntBASIC5.34□□□□□ -1.55
CCDC39Q9UFE4 SOD2P1-201ENST00000396543 562 ntBASIC5.34□□□□□ -1.55
CCDC39Q9UFE4 AL139397.2-201ENST00000404529 772 ntBASIC5.34□□□□□ -1.55
CCDC39Q9UFE4 RNA5SP104-201ENST00000410989 118 ntBASIC5.34□□□□□ -1.55
CCDC39Q9UFE4 RNU6-272P-201ENST00000411028 104 ntBASIC5.34□□□□□ -1.55
CCDC39Q9UFE4 AL020994.2-201ENST00000413244 571 ntTSL 4 BASIC5.34□□□□□ -1.55
CCDC39Q9UFE4 AC080125.1-201ENST00000414888 684 ntBASIC5.34□□□□□ -1.55
CCDC39Q9UFE4 COX6B1P1-201ENST00000415962 213 ntBASIC5.34□□□□□ -1.55
CCDC39Q9UFE4 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
CCDC39Q9UFE4 AL645608.4-201ENST00000423619 154 ntBASIC5.34□□□□□ -1.55
CCDC39Q9UFE4 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC5.34□□□□□ -1.55
CCDC39Q9UFE4 AF228730.2-201ENST00000438784 848 ntBASIC5.34□□□□□ -1.55
CCDC39Q9UFE4 OR1H1P-201ENST00000448731 937 ntBASIC5.34□□□□□ -1.55
CCDC39Q9UFE4 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC5.34□□□□□ -1.55
CCDC39Q9UFE4 AC010733.1-201ENST00000451515 401 ntBASIC5.34□□□□□ -1.55
CCDC39Q9UFE4 RPS15AP17-201ENST00000470598 390 ntBASIC5.34□□□□□ -1.55
CCDC39Q9UFE4 AC126389.1-201ENST00000477436 290 ntBASIC5.34□□□□□ -1.55
CCDC39Q9UFE4 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC5.34□□□□□ -1.55
CCDC39Q9UFE4 TMEM251P1-201ENST00000503717 318 ntBASIC5.34□□□□□ -1.55
CCDC39Q9UFE4 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC5.34□□□□□ -1.55
CCDC39Q9UFE4 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC5.34□□□□□ -1.55
CCDC39Q9UFE4 AC008694.2-201ENST00000517591 306 ntBASIC5.34□□□□□ -1.55
CCDC39Q9UFE4 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC5.34□□□□□ -1.55
CCDC39Q9UFE4 AC068112.1-201ENST00000580057 346 ntTSL 3 BASIC5.34□□□□□ -1.55
CCDC39Q9UFE4 MIR4646-201ENST00000580775 63 ntBASIC5.34□□□□□ -1.55
CCDC39Q9UFE4 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC5.34□□□□□ -1.55
CCDC39Q9UFE4 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC5.34□□□□□ -1.55
CCDC39Q9UFE4 AC018695.3-201ENST00000602617 408 ntTSL 2 BASIC5.34□□□□□ -1.55
CCDC39Q9UFE4 AL670379.11-201ENST00000604059 253 ntBASIC5.34□□□□□ -1.55
CCDC39Q9UFE4 AL670379.10-201ENST00000604330 253 ntBASIC5.34□□□□□ -1.55
CCDC39Q9UFE4 AL670379.12-201ENST00000605291 253 ntBASIC5.34□□□□□ -1.55
CCDC39Q9UFE4 AL670379.9-201ENST00000605428 253 ntBASIC5.34□□□□□ -1.55
CCDC39Q9UFE4 AC006157.1-201ENST00000611750 366 ntBASIC5.34□□□□□ -1.55
CCDC39Q9UFE4 AL355810.1-201ENST00000614629 552 ntBASIC5.34□□□□□ -1.55
CCDC39Q9UFE4 AC018445.2-201ENST00000622987 260 ntBASIC5.34□□□□□ -1.55
CCDC39Q9UFE4 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC5.34□□□□□ -1.55
CCDC39Q9UFE4 CARF-203ENST00000414439 2099 ntTSL 2 BASIC5.34□□□□□ -1.55
CCDC39Q9UFE4 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC5.34□□□□□ -1.55
CCDC39Q9UFE4 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC5.34□□□□□ -1.55
CCDC39Q9UFE4 AC025125.1-201ENST00000624743 1922 ntBASIC5.34□□□□□ -1.55
CCDC39Q9UFE4 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC5.34□□□□□ -1.55
CCDC39Q9UFE4 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC5.34□□□□□ -1.55
CCDC39Q9UFE4 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC5.33□□□□□ -1.56
CCDC39Q9UFE4 AC004972.1-201ENST00000623934 2209 ntBASIC5.33□□□□□ -1.56
CCDC39Q9UFE4 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC39Q9UFE4 AL451142.2-201ENST00000429076 2090 ntBASIC5.33□□□□□ -1.56
CCDC39Q9UFE4 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC5.33□□□□□ -1.56
CCDC39Q9UFE4 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC39Q9UFE4 AL442639.1-201ENST00000625030 1899 ntBASIC5.33□□□□□ -1.56
CCDC39Q9UFE4 ADAM7-202ENST00000380789 3358 ntAPPRIS ALT2 TSL 5 BASIC5.33□□□□□ -1.56
CCDC39Q9UFE4 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC39Q9UFE4 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC39Q9UFE4 RN7SKP224-201ENST00000364140 325 ntBASIC5.33□□□□□ -1.56
CCDC39Q9UFE4 RNY4P16-201ENST00000364768 94 ntBASIC5.33□□□□□ -1.56
CCDC39Q9UFE4 RHOT1P2-201ENST00000366423 333 ntBASIC5.33□□□□□ -1.56
CCDC39Q9UFE4 SNORA51.8-201ENST00000384234 132 ntBASIC5.33□□□□□ -1.56
CCDC39Q9UFE4 RNY1P14-201ENST00000384426 108 ntBASIC5.33□□□□□ -1.56
CCDC39Q9UFE4 Y_RNA.512-201ENST00000384518 102 ntBASIC5.33□□□□□ -1.56
CCDC39Q9UFE4 RNU1-82P-201ENST00000390851 165 ntBASIC5.33□□□□□ -1.56
CCDC39Q9UFE4 AL645927.1-201ENST00000396783 406 ntBASIC5.33□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 119.7 ms