Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 RNU6-28P-201ENST00000362378 107 ntBASIC3.22□□□□□ -1.89
CCDC40Q4G0X9 MIR181B1-201ENST00000385240 110 ntBASIC3.22□□□□□ -1.89
CCDC40Q4G0X9 ERHP2-201ENST00000402323 299 ntBASIC3.22□□□□□ -1.89
CCDC40Q4G0X9 AL136310.1-201ENST00000404926 654 ntBASIC3.22□□□□□ -1.89
CCDC40Q4G0X9 RPL7P8-201ENST00000411964 730 ntBASIC3.22□□□□□ -1.89
CCDC40Q4G0X9 MTATP6P20-201ENST00000414147 562 ntBASIC3.22□□□□□ -1.89
CCDC40Q4G0X9 RPS3AP37-201ENST00000419176 745 ntBASIC3.22□□□□□ -1.89
CCDC40Q4G0X9 TIMM9P2-201ENST00000419324 266 ntBASIC3.22□□□□□ -1.89
CCDC40Q4G0X9 USP9YP11-201ENST00000427537 717 ntBASIC3.22□□□□□ -1.89
CCDC40Q4G0X9 RPL21P2-201ENST00000440049 481 ntBASIC3.22□□□□□ -1.89
CCDC40Q4G0X9 OR10R1P-201ENST00000441524 1141 ntBASIC3.22□□□□□ -1.89
CCDC40Q4G0X9 LAMTOR5P1-201ENST00000444290 270 ntBASIC3.22□□□□□ -1.89
CCDC40Q4G0X9 AL162389.1-201ENST00000449233 177 ntBASIC3.22□□□□□ -1.89
CCDC40Q4G0X9 BX510359.1-201ENST00000456973 237 ntBASIC3.22□□□□□ -1.89
CCDC40Q4G0X9 RNU7-136P-201ENST00000458819 69 ntBASIC3.22□□□□□ -1.89
CCDC40Q4G0X9 AC097493.1-201ENST00000463958 372 ntBASIC3.22□□□□□ -1.89
CCDC40Q4G0X9 AC104164.3-201ENST00000467363 1258 ntBASIC3.22□□□□□ -1.89
CCDC40Q4G0X9 RPL27AP5-201ENST00000469428 449 ntBASIC3.22□□□□□ -1.89
CCDC40Q4G0X9 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC3.22□□□□□ -1.89
CCDC40Q4G0X9 VN1R104P-201ENST00000505115 1009 ntBASIC3.22□□□□□ -1.89
CCDC40Q4G0X9 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC3.22□□□□□ -1.89
CCDC40Q4G0X9 LINC02428-201ENST00000508099 527 ntTSL 5 BASIC3.22□□□□□ -1.89
CCDC40Q4G0X9 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC3.22□□□□□ -1.89
CCDC40Q4G0X9 CTD-2350J17.1-201ENST00000509228 362 ntTSL 2 BASIC3.22□□□□□ -1.89
CCDC40Q4G0X9 AC109464.2-201ENST00000510242 943 ntBASIC3.22□□□□□ -1.89
CCDC40Q4G0X9 TMEM68-214ENST00000523073 536 ntTSL 3 BASIC3.22□□□□□ -1.89
CCDC40Q4G0X9 OR5G4P-201ENST00000525251 760 ntBASIC3.22□□□□□ -1.89
CCDC40Q4G0X9 GLIPR1L1-204ENST00000548623 484 ntTSL 3 BASIC3.22□□□□□ -1.89
CCDC40Q4G0X9 MTCYBP23-201ENST00000558717 1102 ntBASIC3.22□□□□□ -1.89
CCDC40Q4G0X9 FOPNL-208ENST00000575744 565 ntTSL 4 BASIC3.22□□□□□ -1.89
CCDC40Q4G0X9 AC090615.1-201ENST00000577519 154 ntBASIC3.22□□□□□ -1.89
CCDC40Q4G0X9 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC3.22□□□□□ -1.89
CCDC40Q4G0X9 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC3.22□□□□□ -1.89
CCDC40Q4G0X9 AC090617.7-201ENST00000623952 126 ntBASIC3.22□□□□□ -1.89
CCDC40Q4G0X9 AP000676.4-201ENST00000624659 623 ntBASIC3.22□□□□□ -1.89
CCDC40Q4G0X9 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC3.22□□□□□ -1.89
CCDC40Q4G0X9 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
CCDC40Q4G0X9 AC005539.1-201ENST00000443768 1479 ntBASIC3.22□□□□□ -1.89
CCDC40Q4G0X9 AC233263.6-201ENST00000631132 1963 ntBASIC3.21□□□□□ -1.89
CCDC40Q4G0X9 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC3.21□□□□□ -1.9
CCDC40Q4G0X9 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC3.21□□□□□ -1.9
CCDC40Q4G0X9 AC011124.1-201ENST00000521221 1762 ntTSL 2 BASIC3.21□□□□□ -1.9
CCDC40Q4G0X9 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
CCDC40Q4G0X9 RPS3AP24-201ENST00000407896 734 ntBASIC3.21□□□□□ -1.9
CCDC40Q4G0X9 RNU4-22P-201ENST00000411058 166 ntBASIC3.21□□□□□ -1.9
CCDC40Q4G0X9 AL356320.2-201ENST00000417263 507 ntBASIC3.21□□□□□ -1.9
CCDC40Q4G0X9 THAP5P1-201ENST00000439089 262 ntBASIC3.21□□□□□ -1.9
CCDC40Q4G0X9 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC3.21□□□□□ -1.9
CCDC40Q4G0X9 EEF1A1P39-201ENST00000440791 250 ntBASIC3.21□□□□□ -1.9
CCDC40Q4G0X9 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC3.21□□□□□ -1.9
CCDC40Q4G0X9 RPL39P40-201ENST00000445481 146 ntBASIC3.21□□□□□ -1.9
CCDC40Q4G0X9 EXOSC3P1-201ENST00000448649 500 ntBASIC3.21□□□□□ -1.9
CCDC40Q4G0X9 ARPC3P5-201ENST00000448802 534 ntBASIC3.21□□□□□ -1.9
CCDC40Q4G0X9 AC104978.1-201ENST00000449387 391 ntBASIC3.21□□□□□ -1.9
CCDC40Q4G0X9 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC3.21□□□□□ -1.9
CCDC40Q4G0X9 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC3.21□□□□□ -1.9
CCDC40Q4G0X9 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC3.21□□□□□ -1.9
CCDC40Q4G0X9 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
CCDC40Q4G0X9 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC3.21□□□□□ -1.9
CCDC40Q4G0X9 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC3.21□□□□□ -1.9
CCDC40Q4G0X9 AC012625.1-201ENST00000515153 625 ntTSL 5 BASIC3.21□□□□□ -1.9
CCDC40Q4G0X9 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC3.21□□□□□ -1.9
CCDC40Q4G0X9 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
CCDC40Q4G0X9 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC3.21□□□□□ -1.9
CCDC40Q4G0X9 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC3.21□□□□□ -1.9
CCDC40Q4G0X9 AC074050.1-201ENST00000563247 211 ntBASIC3.21□□□□□ -1.9
CCDC40Q4G0X9 AL512347.1-201ENST00000566420 503 ntBASIC3.21□□□□□ -1.9
CCDC40Q4G0X9 MTND3P19-201ENST00000603825 345 ntBASIC3.21□□□□□ -1.9
CCDC40Q4G0X9 NUTF2P8-201ENST00000604593 363 ntBASIC3.21□□□□□ -1.9
CCDC40Q4G0X9 AL020991.1-201ENST00000612314 373 ntBASIC3.21□□□□□ -1.9
CCDC40Q4G0X9 AC107871.2-201ENST00000612894 502 ntBASIC3.21□□□□□ -1.9
CCDC40Q4G0X9 AC011330.2-201ENST00000621680 635 ntBASIC3.21□□□□□ -1.9
CCDC40Q4G0X9 AC231657.1-201ENST00000624313 397 ntBASIC3.21□□□□□ -1.9
CCDC40Q4G0X9 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC3.21□□□□□ -1.9
CCDC40Q4G0X9 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC3.21□□□□□ -1.9
CCDC40Q4G0X9 AC092447.7-201ENST00000422212 1621 ntBASIC3.21□□□□□ -1.9
CCDC40Q4G0X9 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
CCDC40Q4G0X9 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
CCDC40Q4G0X9 AL035425.3-201ENST00000564206 4996 ntBASIC3.21□□□□□ -1.9
CCDC40Q4G0X9 ADAM18-206ENST00000520772 1429 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
CCDC40Q4G0X9 AC091564.4-201ENST00000533934 2194 ntBASIC3.2□□□□□ -1.9
CCDC40Q4G0X9 RNA5SP374-201ENST00000362939 125 ntBASIC3.2□□□□□ -1.9
CCDC40Q4G0X9 RNU6-343P-201ENST00000364709 104 ntBASIC3.2□□□□□ -1.9
CCDC40Q4G0X9 Y_RNA.548-201ENST00000384656 105 ntBASIC3.2□□□□□ -1.9
CCDC40Q4G0X9 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
CCDC40Q4G0X9 RNU6-952P-201ENST00000391164 108 ntBASIC3.2□□□□□ -1.9
CCDC40Q4G0X9 AL354692.1-201ENST00000423044 315 ntBASIC3.2□□□□□ -1.9
CCDC40Q4G0X9 RPL27AP8-201ENST00000424277 446 ntBASIC3.2□□□□□ -1.9
CCDC40Q4G0X9 LINC01953-201ENST00000426870 717 ntTSL 5 BASIC3.2□□□□□ -1.9
CCDC40Q4G0X9 AC022018.1-201ENST00000430685 241 ntBASIC3.2□□□□□ -1.9
CCDC40Q4G0X9 RPL26P6-201ENST00000440913 438 ntBASIC3.2□□□□□ -1.9
CCDC40Q4G0X9 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC3.2□□□□□ -1.9
CCDC40Q4G0X9 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC3.2□□□□□ -1.9
CCDC40Q4G0X9 TEX41-209ENST00000451478 452 ntTSL 2 BASIC3.2□□□□□ -1.9
CCDC40Q4G0X9 MAST4-AS1-201ENST00000451496 777 ntTSL 2 BASIC3.2□□□□□ -1.9
CCDC40Q4G0X9 GSTA11P-201ENST00000452866 669 ntBASIC3.2□□□□□ -1.9
CCDC40Q4G0X9 RPS29P12-201ENST00000460178 152 ntBASIC3.2□□□□□ -1.9
CCDC40Q4G0X9 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC3.2□□□□□ -1.9
CCDC40Q4G0X9 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC3.2□□□□□ -1.9
CCDC40Q4G0X9 AC010374.2-201ENST00000512933 535 ntBASIC3.2□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 122.1 ms