Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC3.85□□□□□ -1.79
HDAC4P56524 FGF7P2-201ENST00000332473 296 ntBASIC3.85□□□□□ -1.79
HDAC4P56524 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC3.85□□□□□ -1.79
HDAC4P56524 RNU4-91P-201ENST00000364778 135 ntBASIC3.85□□□□□ -1.79
HDAC4P56524 Y_RNA.359-201ENST00000365498 102 ntBASIC3.85□□□□□ -1.79
HDAC4P56524 AL356421.1-201ENST00000403255 413 ntBASIC3.85□□□□□ -1.79
HDAC4P56524 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
HDAC4P56524 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC3.85□□□□□ -1.79
HDAC4P56524 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC3.85□□□□□ -1.79
HDAC4P56524 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC3.85□□□□□ -1.79
HDAC4P56524 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC3.85□□□□□ -1.79
HDAC4P56524 YME1L1P1-201ENST00000429435 297 ntBASIC3.85□□□□□ -1.79
HDAC4P56524 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
HDAC4P56524 AC018644.1-201ENST00000429934 551 ntBASIC3.85□□□□□ -1.79
HDAC4P56524 AC109583.1-201ENST00000432156 268 ntBASIC3.85□□□□□ -1.79
HDAC4P56524 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC3.85□□□□□ -1.79
HDAC4P56524 RPL37P21-201ENST00000435890 276 ntBASIC3.85□□□□□ -1.79
HDAC4P56524 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC3.85□□□□□ -1.79
HDAC4P56524 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC3.85□□□□□ -1.79
HDAC4P56524 RPS3AP12-201ENST00000443616 753 ntBASIC3.85□□□□□ -1.79
HDAC4P56524 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC3.85□□□□□ -1.79
HDAC4P56524 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC3.85□□□□□ -1.79
HDAC4P56524 AC004801.2-202ENST00000463559 283 ntBASIC3.85□□□□□ -1.79
HDAC4P56524 HMGB1P25-201ENST00000468402 607 ntBASIC3.85□□□□□ -1.79
HDAC4P56524 ST13P14-201ENST00000474095 734 ntBASIC3.85□□□□□ -1.79
HDAC4P56524 AC034222.1-201ENST00000494052 532 ntBASIC3.85□□□□□ -1.79
HDAC4P56524 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC3.85□□□□□ -1.79
HDAC4P56524 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
HDAC4P56524 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC3.85□□□□□ -1.79
HDAC4P56524 AC004062.1-201ENST00000509926 645 ntBASIC3.85□□□□□ -1.79
HDAC4P56524 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC3.85□□□□□ -1.79
HDAC4P56524 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC3.85□□□□□ -1.79
HDAC4P56524 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC3.85□□□□□ -1.79
HDAC4P56524 IGHV3-76-201ENST00000522465 295 ntBASIC3.85□□□□□ -1.79
HDAC4P56524 ASPH-224ENST00000522603 842 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
HDAC4P56524 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC3.85□□□□□ -1.79
HDAC4P56524 AP000873.5-201ENST00000533906 236 ntBASIC3.85□□□□□ -1.79
HDAC4P56524 AL136146.2-201ENST00000534594 494 ntTSL 2 BASIC3.85□□□□□ -1.79
HDAC4P56524 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC3.85□□□□□ -1.79
HDAC4P56524 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC3.85□□□□□ -1.79
HDAC4P56524 AC126177.3-201ENST00000551839 688 ntBASIC3.85□□□□□ -1.79
HDAC4P56524 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC3.85□□□□□ -1.79
HDAC4P56524 AC099489.2-201ENST00000574976 260 ntBASIC3.85□□□□□ -1.79
HDAC4P56524 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC3.85□□□□□ -1.79
HDAC4P56524 MIR3690-201ENST00000580266 75 ntBASIC3.85□□□□□ -1.79
HDAC4P56524 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC3.85□□□□□ -1.79
HDAC4P56524 MIR3611-201ENST00000584484 83 ntBASIC3.85□□□□□ -1.79
HDAC4P56524 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC3.85□□□□□ -1.79
HDAC4P56524 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.85□□□□□ -1.79
HDAC4P56524 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
HDAC4P56524 AL365503.1-201ENST00000605247 905 ntBASIC3.85□□□□□ -1.79
HDAC4P56524 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC3.85□□□□□ -1.79
HDAC4P56524 HULC.1-201ENST00000612720 240 ntBASIC3.85□□□□□ -1.79
HDAC4P56524 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.85□□□□□ -1.79
HDAC4P56524 AL603839.4-201ENST00000624658 1005 ntBASIC3.85□□□□□ -1.79
HDAC4P56524 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC3.85□□□□□ -1.79
HDAC4P56524 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC3.85□□□□□ -1.79
HDAC4P56524 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
HDAC4P56524 AL049780.3-201ENST00000624612 1583 ntBASIC3.85□□□□□ -1.79
HDAC4P56524 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC3.84□□□□□ -1.79
HDAC4P56524 CD36-221ENST00000534394 1741 ntTSL 2 BASIC3.84□□□□□ -1.79
HDAC4P56524 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC3.84□□□□□ -1.79
HDAC4P56524 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.84□□□□□ -1.79
HDAC4P56524 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
HDAC4P56524 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
HDAC4P56524 Y_RNA.559-201ENST00000384686 107 ntBASIC3.84□□□□□ -1.79
HDAC4P56524 CDK8P2-201ENST00000415020 547 ntBASIC3.84□□□□□ -1.79
HDAC4P56524 HMGB3P20-201ENST00000417997 600 ntBASIC3.84□□□□□ -1.79
HDAC4P56524 ZNF885P-201ENST00000420174 1098 ntBASIC3.84□□□□□ -1.79
HDAC4P56524 AL133547.1-201ENST00000448546 220 ntBASIC3.84□□□□□ -1.79
HDAC4P56524 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC3.84□□□□□ -1.79
HDAC4P56524 TPT1P7-201ENST00000458300 517 ntBASIC3.84□□□□□ -1.79
HDAC4P56524 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC3.84□□□□□ -1.79
HDAC4P56524 RPS4XP13-201ENST00000483219 789 ntBASIC3.84□□□□□ -1.79
HDAC4P56524 FABP5P5-201ENST00000515537 406 ntBASIC3.84□□□□□ -1.79
HDAC4P56524 RN7SKP83-201ENST00000516512 178 ntBASIC3.84□□□□□ -1.79
HDAC4P56524 RNU6-714P-201ENST00000516963 103 ntBASIC3.84□□□□□ -1.79
HDAC4P56524 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
HDAC4P56524 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC3.84□□□□□ -1.79
HDAC4P56524 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
HDAC4P56524 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC3.84□□□□□ -1.79
HDAC4P56524 SETP7-201ENST00000552169 453 ntBASIC3.84□□□□□ -1.79
HDAC4P56524 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC3.84□□□□□ -1.79
HDAC4P56524 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC3.84□□□□□ -1.79
HDAC4P56524 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC3.84□□□□□ -1.79
HDAC4P56524 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC3.84□□□□□ -1.79
HDAC4P56524 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC3.84□□□□□ -1.79
HDAC4P56524 AC015871.2-201ENST00000603605 948 ntBASIC3.84□□□□□ -1.79
HDAC4P56524 DLEU2_1.1-201ENST00000612089 120 ntBASIC3.84□□□□□ -1.79
HDAC4P56524 AC100793.4-201ENST00000613683 429 ntBASIC3.84□□□□□ -1.79
HDAC4P56524 DLEU2_1.2-201ENST00000614667 120 ntBASIC3.84□□□□□ -1.79
HDAC4P56524 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC3.84□□□□□ -1.79
HDAC4P56524 AC091953.5-201ENST00000622919 233 ntBASIC3.84□□□□□ -1.79
HDAC4P56524 AP000553.6-201ENST00000641242 118 ntBASIC3.84□□□□□ -1.79
HDAC4P56524 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
HDAC4P56524 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
HDAC4P56524 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC3.84□□□□□ -1.8
HDAC4P56524 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.84□□□□□ -1.8
HDAC4P56524 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
HDAC4P56524 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC3.84□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 109.5 ms