Protein–RNA interactions for Protein: P51784

USP11, Ubiquitin carboxyl-terminal hydrolase 11, humanhuman

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP11P51784 SNORD116-11-201ENST00000383882 92 ntBASIC5.34□□□□□ -1.55
USP11P51784 RNU6-641P-201ENST00000384006 107 ntBASIC5.34□□□□□ -1.55
USP11P51784 RNU6-890P-201ENST00000384121 107 ntBASIC5.34□□□□□ -1.55
USP11P51784 Y_RNA.496-201ENST00000384444 101 ntBASIC5.34□□□□□ -1.55
USP11P51784 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
USP11P51784 Y_RNA.645-201ENST00000391229 102 ntBASIC5.34□□□□□ -1.55
USP11P51784 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
USP11P51784 RNU2-50P-201ENST00000410494 143 ntBASIC5.34□□□□□ -1.55
USP11P51784 RNU4-6P-201ENST00000410804 122 ntBASIC5.34□□□□□ -1.55
USP11P51784 AC080125.1-201ENST00000414888 684 ntBASIC5.34□□□□□ -1.55
USP11P51784 AL590139.1-201ENST00000416267 400 ntBASIC5.34□□□□□ -1.55
USP11P51784 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC5.34□□□□□ -1.55
USP11P51784 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC5.34□□□□□ -1.55
USP11P51784 RPS24P6-201ENST00000452670 400 ntBASIC5.34□□□□□ -1.55
USP11P51784 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC5.34□□□□□ -1.55
USP11P51784 RN7SL860P-201ENST00000473738 223 ntBASIC5.34□□□□□ -1.55
USP11P51784 RPL21P93-201ENST00000480465 489 ntBASIC5.34□□□□□ -1.55
USP11P51784 AC079140.5-201ENST00000507882 310 ntBASIC5.34□□□□□ -1.55
USP11P51784 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC5.34□□□□□ -1.55
USP11P51784 Y_RNA.668-201ENST00000516233 93 ntBASIC5.34□□□□□ -1.55
USP11P51784 RNA5SP360-201ENST00000516555 118 ntBASIC5.34□□□□□ -1.55
USP11P51784 AC087854.1-201ENST00000519706 414 ntBASIC5.34□□□□□ -1.55
USP11P51784 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC5.34□□□□□ -1.55
USP11P51784 AC063949.1-201ENST00000552900 865 ntBASIC5.34□□□□□ -1.55
USP11P51784 AC113195.1-201ENST00000579952 141 ntBASIC5.34□□□□□ -1.55
USP11P51784 RPL23AP92-201ENST00000603609 255 ntBASIC5.34□□□□□ -1.55
USP11P51784 AC006157.1-201ENST00000611750 366 ntBASIC5.34□□□□□ -1.55
USP11P51784 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC5.34□□□□□ -1.55
USP11P51784 AC133104.2-201ENST00000615272 193 ntBASIC5.34□□□□□ -1.55
USP11P51784 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC5.34□□□□□ -1.55
USP11P51784 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC5.34□□□□□ -1.55
USP11P51784 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.55
USP11P51784 AL031119.1-201ENST00000404707 1879 ntBASIC5.34□□□□□ -1.55
USP11P51784 LPAR4-201ENST00000435339 2611 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
USP11P51784 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
USP11P51784 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.56
USP11P51784 AC125257.1-201ENST00000560400 2930 ntBASIC5.34□□□□□ -1.56
USP11P51784 KPNA2P1-201ENST00000458289 1591 ntBASIC5.33□□□□□ -1.56
USP11P51784 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC5.33□□□□□ -1.56
USP11P51784 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC5.33□□□□□ -1.56
USP11P51784 ARHGAP42P3-201ENST00000443989 2508 ntBASIC5.33□□□□□ -1.56
USP11P51784 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
USP11P51784 AC130650.2-201ENST00000618736 2403 ntBASIC5.33□□□□□ -1.56
USP11P51784 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC5.33□□□□□ -1.56
USP11P51784 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
USP11P51784 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
USP11P51784 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
USP11P51784 CCDC169-204ENST00000379864 5944 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
USP11P51784 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
USP11P51784 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
USP11P51784 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC5.33□□□□□ -1.56
USP11P51784 AL590240.1-201ENST00000334118 313 ntBASIC5.33□□□□□ -1.56
USP11P51784 Y_RNA.307-201ENST00000365022 117 ntBASIC5.33□□□□□ -1.56
USP11P51784 SNORA56-201ENST00000383966 129 ntBASIC5.33□□□□□ -1.56
USP11P51784 Y_RNA.455-201ENST00000384230 98 ntBASIC5.33□□□□□ -1.56
USP11P51784 SNORA68.2-201ENST00000391263 128 ntBASIC5.33□□□□□ -1.56
USP11P51784 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC5.33□□□□□ -1.56
USP11P51784 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC5.33□□□□□ -1.56
USP11P51784 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC5.33□□□□□ -1.56
USP11P51784 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC5.33□□□□□ -1.56
USP11P51784 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC5.33□□□□□ -1.56
USP11P51784 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC5.33□□□□□ -1.56
USP11P51784 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC5.33□□□□□ -1.56
USP11P51784 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC5.33□□□□□ -1.56
USP11P51784 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC5.33□□□□□ -1.56
USP11P51784 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC5.33□□□□□ -1.56
USP11P51784 RPL10P17-201ENST00000453852 316 ntBASIC5.33□□□□□ -1.56
USP11P51784 RPS20P21-201ENST00000466859 343 ntBASIC5.33□□□□□ -1.56
USP11P51784 RPS29P22-201ENST00000472363 168 ntBASIC5.33□□□□□ -1.56
USP11P51784 AC007686.1-201ENST00000488511 463 ntBASIC5.33□□□□□ -1.56
USP11P51784 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
USP11P51784 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC5.33□□□□□ -1.56
USP11P51784 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC5.33□□□□□ -1.56
USP11P51784 AC011979.2-201ENST00000527568 352 ntBASIC5.33□□□□□ -1.56
USP11P51784 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC5.33□□□□□ -1.56
USP11P51784 AC091073.1-201ENST00000559620 666 ntTSL 3 BASIC5.33□□□□□ -1.56
USP11P51784 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC5.33□□□□□ -1.56
USP11P51784 AC024619.4-201ENST00000580924 316 ntBASIC5.33□□□□□ -1.56
USP11P51784 AC011477.5-201ENST00000586571 259 ntBASIC5.33□□□□□ -1.56
USP11P51784 BNIP3P16-201ENST00000589779 534 ntBASIC5.33□□□□□ -1.56
USP11P51784 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC5.33□□□□□ -1.56
USP11P51784 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC5.33□□□□□ -1.56
USP11P51784 AC107871.2-201ENST00000612894 502 ntBASIC5.33□□□□□ -1.56
USP11P51784 AP001486.3-201ENST00000615334 372 ntBASIC5.33□□□□□ -1.56
USP11P51784 AL596245.1-201ENST00000618994 362 ntBASIC5.33□□□□□ -1.56
USP11P51784 AC092608.2-201ENST00000624427 218 ntBASIC5.33□□□□□ -1.56
USP11P51784 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC5.33□□□□□ -1.56
USP11P51784 AL138713.1-201ENST00000624026 2130 ntBASIC5.33□□□□□ -1.56
USP11P51784 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
USP11P51784 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC5.33□□□□□ -1.56
USP11P51784 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
USP11P51784 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
USP11P51784 AC092079.1-201ENST00000558620 1985 ntBASIC5.33□□□□□ -1.56
USP11P51784 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC5.33□□□□□ -1.56
USP11P51784 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
USP11P51784 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
USP11P51784 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
USP11P51784 AC107068.1-201ENST00000563286 4218 ntBASIC5.32□□□□□ -1.56
USP11P51784 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
USP11P51784 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 105.6 ms