Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC3.29□□□□□ -1.88
HOXA1P49639 AL139415.2-201ENST00000431968 163 ntBASIC3.29□□□□□ -1.88
HOXA1P49639 MTND4LP10-201ENST00000435146 291 ntBASIC3.29□□□□□ -1.88
HOXA1P49639 UBE2V1P13-201ENST00000436983 439 ntBASIC3.29□□□□□ -1.88
HOXA1P49639 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC3.29□□□□□ -1.88
HOXA1P49639 USP9YP15-201ENST00000442391 422 ntBASIC3.29□□□□□ -1.88
HOXA1P49639 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC3.29□□□□□ -1.88
HOXA1P49639 Z99127.3-201ENST00000448158 395 ntBASIC3.29□□□□□ -1.88
HOXA1P49639 AC009963.2-201ENST00000453431 138 ntBASIC3.29□□□□□ -1.88
HOXA1P49639 C1DP4-201ENST00000455429 424 ntBASIC3.29□□□□□ -1.88
HOXA1P49639 SNORD121B-201ENST00000458838 81 ntBASIC3.29□□□□□ -1.88
HOXA1P49639 snoU13.1-201ENST00000459157 104 ntBASIC3.29□□□□□ -1.88
HOXA1P49639 AC109327.1-201ENST00000471666 403 ntBASIC3.29□□□□□ -1.88
HOXA1P49639 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC3.29□□□□□ -1.88
HOXA1P49639 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC3.29□□□□□ -1.88
HOXA1P49639 RPL35P6-201ENST00000490024 372 ntBASIC3.29□□□□□ -1.88
HOXA1P49639 AC114967.1-201ENST00000504890 259 ntBASIC3.29□□□□□ -1.88
HOXA1P49639 ADGRL3-AS1-203ENST00000506704 606 ntTSL 5 BASIC3.29□□□□□ -1.88
HOXA1P49639 AC111000.3-201ENST00000508057 576 ntBASIC3.29□□□□□ -1.88
HOXA1P49639 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC3.29□□□□□ -1.88
HOXA1P49639 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC3.29□□□□□ -1.88
HOXA1P49639 RNA5SP380-201ENST00000517190 98 ntBASIC3.29□□□□□ -1.88
HOXA1P49639 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC3.29□□□□□ -1.88
HOXA1P49639 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
HOXA1P49639 TRAV8-5-201ENST00000537369 341 ntBASIC3.29□□□□□ -1.88
HOXA1P49639 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC3.29□□□□□ -1.88
HOXA1P49639 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC3.29□□□□□ -1.88
HOXA1P49639 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC3.29□□□□□ -1.88
HOXA1P49639 AC136619.2-201ENST00000563361 631 ntBASIC3.29□□□□□ -1.88
HOXA1P49639 MIR3146-201ENST00000580367 79 ntBASIC3.29□□□□□ -1.88
HOXA1P49639 MIR3682-201ENST00000581338 84 ntBASIC3.29□□□□□ -1.88
HOXA1P49639 AC012417.1-201ENST00000582307 1039 ntBASIC3.29□□□□□ -1.88
HOXA1P49639 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC3.29□□□□□ -1.88
HOXA1P49639 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC3.29□□□□□ -1.88
HOXA1P49639 MLECP1-201ENST00000615893 709 ntBASIC3.29□□□□□ -1.88
HOXA1P49639 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
HOXA1P49639 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
HOXA1P49639 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
HOXA1P49639 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC3.29□□□□□ -1.88
HOXA1P49639 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
HOXA1P49639 AC118273.1-201ENST00000525324 3006 ntBASIC3.28□□□□□ -1.88
HOXA1P49639 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
HOXA1P49639 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.28□□□□□ -1.88
HOXA1P49639 Y_RNA.381-201ENST00000365666 102 ntBASIC3.28□□□□□ -1.88
HOXA1P49639 RNU6-629P-201ENST00000384061 103 ntBASIC3.28□□□□□ -1.88
HOXA1P49639 MIR135A2-201ENST00000384854 100 ntBASIC3.28□□□□□ -1.88
HOXA1P49639 SNORD115-47-201ENST00000391226 86 ntBASIC3.28□□□□□ -1.88
HOXA1P49639 RPL23AP32-201ENST00000395315 459 ntBASIC3.28□□□□□ -1.88
HOXA1P49639 RNU6ATAC25P-201ENST00000408798 117 ntBASIC3.28□□□□□ -1.88
HOXA1P49639 RNU4-25P-201ENST00000410569 230 ntBASIC3.28□□□□□ -1.88
HOXA1P49639 RPL37P18-201ENST00000411602 243 ntBASIC3.28□□□□□ -1.88
HOXA1P49639 MTND1P21-201ENST00000412991 285 ntBASIC3.28□□□□□ -1.88
HOXA1P49639 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC3.28□□□□□ -1.88
HOXA1P49639 RPL17P36-201ENST00000420302 549 ntBASIC3.28□□□□□ -1.88
HOXA1P49639 AC233728.2-201ENST00000425348 757 ntBASIC3.28□□□□□ -1.88
HOXA1P49639 TRIM60P10Y-201ENST00000425589 751 ntBASIC3.28□□□□□ -1.88
HOXA1P49639 TRIAP1P1-201ENST00000427062 225 ntBASIC3.28□□□□□ -1.88
HOXA1P49639 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC3.28□□□□□ -1.88
HOXA1P49639 AC079780.1-201ENST00000428259 207 ntBASIC3.28□□□□□ -1.88
HOXA1P49639 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC3.28□□□□□ -1.88
HOXA1P49639 FCF1P1-201ENST00000432690 571 ntBASIC3.28□□□□□ -1.88
HOXA1P49639 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC3.28□□□□□ -1.88
HOXA1P49639 TRIM60P8Y-201ENST00000436338 762 ntBASIC3.28□□□□□ -1.88
HOXA1P49639 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
HOXA1P49639 HMGB3P30-201ENST00000457863 606 ntBASIC3.28□□□□□ -1.88
HOXA1P49639 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC3.28□□□□□ -1.88
HOXA1P49639 snoU109.4-201ENST00000458953 143 ntBASIC3.28□□□□□ -1.88
HOXA1P49639 RPL35AP28-201ENST00000459730 331 ntBASIC3.28□□□□□ -1.88
HOXA1P49639 ST13P14-201ENST00000474095 734 ntBASIC3.28□□□□□ -1.88
HOXA1P49639 AK3P4-201ENST00000504283 583 ntBASIC3.28□□□□□ -1.88
HOXA1P49639 AC114797.1-201ENST00000514003 728 ntBASIC3.28□□□□□ -1.88
HOXA1P49639 RNU7-143P-201ENST00000516781 65 ntBASIC3.28□□□□□ -1.88
HOXA1P49639 RN7SKP289-201ENST00000517244 295 ntBASIC3.28□□□□□ -1.88
HOXA1P49639 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC3.28□□□□□ -1.88
HOXA1P49639 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC3.28□□□□□ -1.88
HOXA1P49639 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC3.28□□□□□ -1.88
HOXA1P49639 OR4H12P-201ENST00000556269 907 ntBASIC3.28□□□□□ -1.88
HOXA1P49639 MIR3167-201ENST00000579623 85 ntBASIC3.28□□□□□ -1.88
HOXA1P49639 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC3.28□□□□□ -1.88
HOXA1P49639 AC011468.4-201ENST00000603942 409 ntBASIC3.28□□□□□ -1.88
HOXA1P49639 AP000860.1-201ENST00000605250 559 ntBASIC3.28□□□□□ -1.88
HOXA1P49639 AC024940.4-201ENST00000605507 246 ntBASIC3.28□□□□□ -1.88
HOXA1P49639 RNA5SP108-201ENST00000605921 117 ntBASIC3.28□□□□□ -1.88
HOXA1P49639 AC090970.3-201ENST00000612566 866 ntBASIC3.28□□□□□ -1.88
HOXA1P49639 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC3.28□□□□□ -1.88
HOXA1P49639 U6atac.1-201ENST00000616025 117 ntBASIC3.28□□□□□ -1.88
HOXA1P49639 AC006338.1-201ENST00000618453 749 ntBASIC3.28□□□□□ -1.88
HOXA1P49639 AL356585.4-201ENST00000623078 1229 ntBASIC3.28□□□□□ -1.88
HOXA1P49639 CR381653.2-201ENST00000624041 768 ntBASIC3.28□□□□□ -1.88
HOXA1P49639 AC124864.2-201ENST00000624736 186 ntBASIC3.28□□□□□ -1.88
HOXA1P49639 AL136313.1-201ENST00000624804 202 ntBASIC3.28□□□□□ -1.88
HOXA1P49639 AC012593.1-212ENST00000627058 580 ntTSL 5 BASIC3.28□□□□□ -1.88
HOXA1P49639 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC3.28□□□□□ -1.88
HOXA1P49639 SRP54-214ENST00000630962 162 ntTSL 5 BASIC3.28□□□□□ -1.88
HOXA1P49639 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
HOXA1P49639 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
HOXA1P49639 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
HOXA1P49639 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC3.28□□□□□ -1.89
HOXA1P49639 API5-210ENST00000534600 1760 ntTSL 5 BASIC3.28□□□□□ -1.89
HOXA1P49639 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC3.27□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 125.5 ms