Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC2.63□□□□□ -1.99
CUX1P39880 AC008568.2-201ENST00000623862 2313 ntBASIC2.63□□□□□ -1.99
CUX1P39880 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
CUX1P39880 AL035405.1-201ENST00000400795 710 ntBASIC2.63□□□□□ -1.99
CUX1P39880 HSPE1P28-201ENST00000443139 211 ntBASIC2.63□□□□□ -1.99
CUX1P39880 AC011196.1-201ENST00000451816 595 ntTSL 2 BASIC2.63□□□□□ -1.99
CUX1P39880 AL137847.2-201ENST00000458111 527 ntTSL 3 BASIC2.63□□□□□ -1.99
CUX1P39880 LINC01455-201ENST00000503167 561 ntTSL 4 BASIC2.63□□□□□ -1.99
CUX1P39880 RNA5SP102-201ENST00000516865 106 ntBASIC2.63□□□□□ -1.99
CUX1P39880 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC2.63□□□□□ -1.99
CUX1P39880 AC084851.1-201ENST00000529105 249 ntBASIC2.63□□□□□ -1.99
CUX1P39880 SNORD53B-201ENST00000577887 78 ntBASIC2.63□□□□□ -1.99
CUX1P39880 MIR3618-201ENST00000580330 88 ntBASIC2.63□□□□□ -1.99
CUX1P39880 AC006026.1-201ENST00000444025 1803 ntBASIC2.62□□□□□ -1.99
CUX1P39880 AC121333.1-201ENST00000567488 2709 ntBASIC2.62□□□□□ -1.99
CUX1P39880 SNORA7.1-201ENST00000363750 139 ntBASIC2.62□□□□□ -1.99
CUX1P39880 RNA5SP489-201ENST00000410986 109 ntBASIC2.62□□□□□ -1.99
CUX1P39880 AC099336.2-201ENST00000422457 254 ntBASIC2.62□□□□□ -1.99
CUX1P39880 AC109583.1-201ENST00000432156 268 ntBASIC2.62□□□□□ -1.99
CUX1P39880 AP000855.1-201ENST00000433210 636 ntTSL 2 BASIC2.62□□□□□ -1.99
CUX1P39880 AL139294.1-201ENST00000435739 512 ntTSL 2 BASIC2.62□□□□□ -1.99
CUX1P39880 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC2.62□□□□□ -1.99
CUX1P39880 RNU2-58P-201ENST00000516403 183 ntBASIC2.62□□□□□ -1.99
CUX1P39880 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC2.62□□□□□ -1.99
CUX1P39880 AC135279.1-201ENST00000543493 504 ntBASIC2.62□□□□□ -1.99
CUX1P39880 AC022709.1-201ENST00000615967 87 ntBASIC2.62□□□□□ -1.99
CUX1P39880 LINC02428-201ENST00000508099 527 ntTSL 5 BASIC2.61□□□□□ -1.99
CUX1P39880 MIR3935-201ENST00000583472 104 ntBASIC2.61□□□□□ -1.99
CUX1P39880 AC011468.4-201ENST00000603942 409 ntBASIC2.61□□□□□ -1.99
CUX1P39880 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
CUX1P39880 MTND5P3-201ENST00000438536 1800 ntBASIC2.61□□□□□ -1.99
CUX1P39880 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC2.6□□□□□ -1.99
CUX1P39880 RNU6-1-201ENST00000383898 107 ntBASIC2.6□□□□□ -1.99
CUX1P39880 RNU6-42P-201ENST00000384165 107 ntBASIC2.6□□□□□ -1.99
CUX1P39880 RNU6-36P-201ENST00000384172 107 ntBASIC2.6□□□□□ -1.99
CUX1P39880 RNU6-4P-201ENST00000384205 107 ntBASIC2.6□□□□□ -1.99
CUX1P39880 RNU6-5P-201ENST00000384238 107 ntBASIC2.6□□□□□ -1.99
CUX1P39880 RNU6-3P-201ENST00000384314 107 ntBASIC2.6□□□□□ -1.99
CUX1P39880 RNU6-2-201ENST00000384627 107 ntBASIC2.6□□□□□ -1.99
CUX1P39880 RNU6-9-201ENST00000384776 107 ntBASIC2.6□□□□□ -1.99
CUX1P39880 RNU6-33P-201ENST00000384793 107 ntBASIC2.6□□□□□ -1.99
CUX1P39880 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC2.6□□□□□ -1.99
CUX1P39880 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC2.6□□□□□ -1.99
CUX1P39880 AC023128.2-201ENST00000420880 1223 ntBASIC2.6□□□□□ -1.99
CUX1P39880 RGS5-217ENST00000451759 835 ntTSL 3 BASIC2.6□□□□□ -1.99
CUX1P39880 RPL23AP55-201ENST00000498163 452 ntBASIC2.6□□□□□ -1.99
CUX1P39880 RNU6-6P-201ENST00000606623 107 ntBASIC2.6□□□□□ -1.99
CUX1P39880 DAOA-AS1_1.1-201ENST00000613021 201 ntBASIC2.6□□□□□ -1.99
CUX1P39880 MIR325HG-208ENST00000630388 1043 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
CUX1P39880 BX649567.1-201ENST00000642071 1134 ntBASIC2.6□□□□□ -1.99
CUX1P39880 AL118496.1-201ENST00000440201 1812 ntBASIC2.6□□□□□ -1.99
CUX1P39880 SERPINI2-206ENST00000471111 1331 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
CUX1P39880 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
CUX1P39880 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
CUX1P39880 LINC01614-201ENST00000415479 648 ntTSL 2 BASIC2.59□□□□□ -1.99
CUX1P39880 AC009474.2-201ENST00000451383 136 ntBASIC2.59□□□□□ -1.99
CUX1P39880 TTTY19-201ENST00000453955 269 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
CUX1P39880 AC107398.1-201ENST00000486904 505 ntBASIC2.59□□□□□ -1.99
CUX1P39880 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC2.59□□□□□ -1.99
CUX1P39880 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC2.59□□□□□ -1.99
CUX1P39880 AC126118.1-201ENST00000607744 628 ntBASIC2.59□□□□□ -1.99
CUX1P39880 AC005156.1-201ENST00000613371 573 ntBASIC2.59□□□□□ -1.99
CUX1P39880 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
CUX1P39880 TRIM60P8Y-201ENST00000436338 762 ntBASIC2.58□□□□□ -2
CUX1P39880 AC092754.2-201ENST00000463506 460 ntBASIC2.58□□□□□ -2
CUX1P39880 AC008780.2-201ENST00000509844 820 ntTSL 2 BASIC2.58□□□□□ -2
CUX1P39880 PARPBP-212ENST00000543784 992 ntTSL 2 BASIC2.58□□□□□ -2
CUX1P39880 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC2.58□□□□□ -2
CUX1P39880 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC2.58□□□□□ -2
CUX1P39880 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC2.58□□□□□ -2
CUX1P39880 OR8K5-201ENST00000313447 924 ntAPPRIS P1 BASIC2.58□□□□□ -2
CUX1P39880 MIR124-3-201ENST00000384866 87 ntBASIC2.58□□□□□ -2
CUX1P39880 HSPE1P26-201ENST00000405341 275 ntBASIC2.58□□□□□ -2
CUX1P39880 RPS29P29-201ENST00000456396 171 ntBASIC2.58□□□□□ -2
CUX1P39880 AP000873.1-201ENST00000463987 400 ntBASIC2.58□□□□□ -2
CUX1P39880 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC2.58□□□□□ -2
CUX1P39880 MTCO1P30-201ENST00000515244 580 ntBASIC2.58□□□□□ -2
CUX1P39880 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC2.58□□□□□ -2
CUX1P39880 OR4K8P-201ENST00000578842 1048 ntBASIC2.58□□□□□ -2
CUX1P39880 RPL23AP88-201ENST00000605759 454 ntBASIC2.58□□□□□ -2
CUX1P39880 CFTRP2-201ENST00000634304 199 ntBASIC2.58□□□□□ -2
CUX1P39880 MIR4278-201ENST00000636094 69 ntBASIC2.58□□□□□ -2
CUX1P39880 HSPE1P11-201ENST00000339579 310 ntBASIC2.57□□□□□ -2
CUX1P39880 TEX41-202ENST00000414256 604 ntTSL 5 BASIC2.57□□□□□ -2
CUX1P39880 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC2.57□□□□□ -2
CUX1P39880 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC2.57□□□□□ -2
CUX1P39880 MTCYBP45-201ENST00000435243 565 ntBASIC2.57□□□□□ -2
CUX1P39880 AC244505.5-201ENST00000443639 207 ntBASIC2.57□□□□□ -2
CUX1P39880 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC2.57□□□□□ -2
CUX1P39880 LTV1P1-201ENST00000510683 1237 ntBASIC2.57□□□□□ -2
CUX1P39880 RNA5SP220-201ENST00000516298 104 ntBASIC2.57□□□□□ -2
CUX1P39880 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC2.57□□□□□ -2
CUX1P39880 CPXCR1-203ENST00000614120 1485 ntAPPRIS P1 TSL 3 BASIC2.57□□□□□ -2
CUX1P39880 Y_RNA.374-201ENST00000365606 101 ntBASIC2.56□□□□□ -2
CUX1P39880 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC2.56□□□□□ -2
CUX1P39880 AL391839.1-201ENST00000417447 265 ntTSL 2 BASIC2.56□□□□□ -2
CUX1P39880 ATP5J2P3-201ENST00000451550 258 ntBASIC2.56□□□□□ -2
CUX1P39880 HMGB3P30-201ENST00000457863 606 ntBASIC2.56□□□□□ -2
CUX1P39880 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC2.56□□□□□ -2
CUX1P39880 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC2.56□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 151.8 ms