Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AC103952.1-201ENST00000521872 590 ntTSL 3 BASIC3.9□□□□□ -1.79
HOXC9P31274 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
HOXC9P31274 AKIRIN1P1-201ENST00000547384 544 ntBASIC3.9□□□□□ -1.79
HOXC9P31274 HSPE1P3-201ENST00000559254 309 ntBASIC3.9□□□□□ -1.79
HOXC9P31274 MIR5047-201ENST00000579212 100 ntBASIC3.9□□□□□ -1.79
HOXC9P31274 LINC01893-201ENST00000581750 479 ntTSL 3 BASIC3.9□□□□□ -1.79
HOXC9P31274 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC3.9□□□□□ -1.79
HOXC9P31274 AC025588.4-201ENST00000615802 908 ntBASIC3.9□□□□□ -1.79
HOXC9P31274 AL158196.1-201ENST00000616786 434 ntBASIC3.9□□□□□ -1.79
HOXC9P31274 RMST_9.1-201ENST00000619945 193 ntBASIC3.9□□□□□ -1.79
HOXC9P31274 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.9□□□□□ -1.79
HOXC9P31274 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
HOXC9P31274 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.9□□□□□ -1.79
HOXC9P31274 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC3.9□□□□□ -1.79
HOXC9P31274 AP003122.5-201ENST00000527668 3766 ntBASIC3.9□□□□□ -1.79
HOXC9P31274 DCAF13P1-201ENST00000495256 1330 ntBASIC3.9□□□□□ -1.79
HOXC9P31274 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC3.9□□□□□ -1.79
HOXC9P31274 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
HOXC9P31274 AL022578.1-201ENST00000439330 1433 ntBASIC3.89□□□□□ -1.79
HOXC9P31274 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC3.89□□□□□ -1.79
HOXC9P31274 RNU6-263P-201ENST00000363811 107 ntBASIC3.89□□□□□ -1.79
HOXC9P31274 SNORA9.2-201ENST00000365361 133 ntBASIC3.89□□□□□ -1.79
HOXC9P31274 RNU6-301P-201ENST00000384277 107 ntBASIC3.89□□□□□ -1.79
HOXC9P31274 RNU5A-2P-201ENST00000384337 116 ntBASIC3.89□□□□□ -1.79
HOXC9P31274 AL021407.1-201ENST00000404531 386 ntBASIC3.89□□□□□ -1.79
HOXC9P31274 MIR1250-201ENST00000408098 113 ntBASIC3.89□□□□□ -1.79
HOXC9P31274 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC3.89□□□□□ -1.79
HOXC9P31274 AC083875.1-201ENST00000419509 405 ntBASIC3.89□□□□□ -1.79
HOXC9P31274 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC3.89□□□□□ -1.79
HOXC9P31274 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC3.89□□□□□ -1.79
HOXC9P31274 AC013401.1-202ENST00000422017 626 ntTSL 2 BASIC3.89□□□□□ -1.79
HOXC9P31274 AL365338.1-201ENST00000422282 858 ntBASIC3.89□□□□□ -1.79
HOXC9P31274 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC3.89□□□□□ -1.79
HOXC9P31274 RPL23AP33-201ENST00000442301 452 ntBASIC3.89□□□□□ -1.79
HOXC9P31274 AC112653.1-201ENST00000443851 386 ntBASIC3.89□□□□□ -1.79
HOXC9P31274 AC009299.3-202ENST00000445372 538 ntTSL 3 BASIC3.89□□□□□ -1.79
HOXC9P31274 RPL29P29-201ENST00000448725 423 ntBASIC3.89□□□□□ -1.79
HOXC9P31274 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC3.89□□□□□ -1.79
HOXC9P31274 USP9YP34-201ENST00000453983 808 ntBASIC3.89□□□□□ -1.79
HOXC9P31274 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC3.89□□□□□ -1.79
HOXC9P31274 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC3.89□□□□□ -1.79
HOXC9P31274 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
HOXC9P31274 RPL30P6-201ENST00000475925 342 ntBASIC3.89□□□□□ -1.79
HOXC9P31274 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC3.89□□□□□ -1.79
HOXC9P31274 AC090453.1-201ENST00000495560 436 ntBASIC3.89□□□□□ -1.79
HOXC9P31274 AC092045.1-201ENST00000495716 1231 ntBASIC3.89□□□□□ -1.79
HOXC9P31274 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC3.89□□□□□ -1.79
HOXC9P31274 AC005178.1-201ENST00000508392 440 ntBASIC3.89□□□□□ -1.79
HOXC9P31274 TEMN3-AS1-201ENST00000510211 401 ntTSL 3 BASIC3.89□□□□□ -1.79
HOXC9P31274 AC095057.2-201ENST00000515422 553 ntTSL 4 BASIC3.89□□□□□ -1.79
HOXC9P31274 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC3.89□□□□□ -1.79
HOXC9P31274 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC3.89□□□□□ -1.79
HOXC9P31274 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
HOXC9P31274 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC3.89□□□□□ -1.79
HOXC9P31274 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC3.89□□□□□ -1.79
HOXC9P31274 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
HOXC9P31274 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC3.89□□□□□ -1.79
HOXC9P31274 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC3.89□□□□□ -1.79
HOXC9P31274 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC3.89□□□□□ -1.79
HOXC9P31274 AC010653.1-201ENST00000571108 881 ntBASIC3.89□□□□□ -1.79
HOXC9P31274 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC3.89□□□□□ -1.79
HOXC9P31274 AC010620.1-201ENST00000601088 1102 ntBASIC3.89□□□□□ -1.79
HOXC9P31274 NRBF2P5-201ENST00000603087 788 ntBASIC3.89□□□□□ -1.79
HOXC9P31274 AC073968.1-201ENST00000618594 637 ntBASIC3.89□□□□□ -1.79
HOXC9P31274 PLCE1P1-201ENST00000622094 305 ntBASIC3.89□□□□□ -1.79
HOXC9P31274 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.89□□□□□ -1.79
HOXC9P31274 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC3.89□□□□□ -1.79
HOXC9P31274 PABPC1P7-201ENST00000413177 1513 ntBASIC3.89□□□□□ -1.79
HOXC9P31274 AL445523.1-201ENST00000451184 1362 ntBASIC3.89□□□□□ -1.79
HOXC9P31274 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC3.89□□□□□ -1.79
HOXC9P31274 ANKRD62P1-201ENST00000434304 1623 ntBASIC3.88□□□□□ -1.79
HOXC9P31274 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
HOXC9P31274 AL136360.1-201ENST00000503377 1900 ntBASIC3.88□□□□□ -1.79
HOXC9P31274 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC3.88□□□□□ -1.79
HOXC9P31274 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC3.88□□□□□ -1.79
HOXC9P31274 RNU6-289P-201ENST00000364093 107 ntBASIC3.88□□□□□ -1.79
HOXC9P31274 RNU6-723P-201ENST00000383973 107 ntBASIC3.88□□□□□ -1.79
HOXC9P31274 HMGB1P17-201ENST00000403495 628 ntBASIC3.88□□□□□ -1.79
HOXC9P31274 RNU6-920P-201ENST00000410926 92 ntBASIC3.88□□□□□ -1.79
HOXC9P31274 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC3.88□□□□□ -1.79
HOXC9P31274 LANCL1-AS1-201ENST00000416344 714 ntTSL 3 BASIC3.88□□□□□ -1.79
HOXC9P31274 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.88□□□□□ -1.79
HOXC9P31274 AC005517.2-201ENST00000424673 553 ntBASIC3.88□□□□□ -1.79
HOXC9P31274 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC3.88□□□□□ -1.79
HOXC9P31274 AC087499.2-201ENST00000432861 149 ntBASIC3.88□□□□□ -1.79
HOXC9P31274 SETP8-201ENST00000435341 628 ntBASIC3.88□□□□□ -1.79
HOXC9P31274 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
HOXC9P31274 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC3.88□□□□□ -1.79
HOXC9P31274 AC117522.2-201ENST00000510049 657 ntBASIC3.88□□□□□ -1.79
HOXC9P31274 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC3.88□□□□□ -1.79
HOXC9P31274 AC022861.1-201ENST00000522981 663 ntBASIC3.88□□□□□ -1.79
HOXC9P31274 AL356057.1-201ENST00000533798 831 ntBASIC3.88□□□□□ -1.79
HOXC9P31274 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC3.88□□□□□ -1.79
HOXC9P31274 AC091515.1-201ENST00000548110 679 ntBASIC3.88□□□□□ -1.79
HOXC9P31274 ANKRD36BP2-206ENST00000575193 1245 ntBASIC3.88□□□□□ -1.79
HOXC9P31274 MIR3915-201ENST00000578518 97 ntBASIC3.88□□□□□ -1.79
HOXC9P31274 BBIP1P1-201ENST00000602999 279 ntBASIC3.88□□□□□ -1.79
HOXC9P31274 RNU6-88P-201ENST00000606801 100 ntBASIC3.88□□□□□ -1.79
HOXC9P31274 AC107294.1-201ENST00000609524 467 ntBASIC3.88□□□□□ -1.79
HOXC9P31274 AC093783.1-201ENST00000612976 329 ntBASIC3.88□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms