Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC4.24□□□□□ -1.73
NPHP1O15259 XIST_intron.1-201ENST00000619444 68 ntBASIC4.24□□□□□ -1.73
NPHP1O15259 U7.8-201ENST00000619968 63 ntBASIC4.24□□□□□ -1.73
NPHP1O15259 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC4.24□□□□□ -1.73
NPHP1O15259 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
NPHP1O15259 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC4.24□□□□□ -1.73
NPHP1O15259 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
NPHP1O15259 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
NPHP1O15259 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC4.24□□□□□ -1.73
NPHP1O15259 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
NPHP1O15259 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC4.23□□□□□ -1.73
NPHP1O15259 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
NPHP1O15259 AC090740.1-201ENST00000623193 2262 ntBASIC4.23□□□□□ -1.73
NPHP1O15259 AL672167.1-206ENST00000356293 943 ntBASIC4.23□□□□□ -1.73
NPHP1O15259 PARD3-204ENST00000374768 799 ntTSL 3 BASIC4.23□□□□□ -1.73
NPHP1O15259 AL138885.1-201ENST00000405921 675 ntBASIC4.23□□□□□ -1.73
NPHP1O15259 RPL5P18-201ENST00000406671 891 ntBASIC4.23□□□□□ -1.73
NPHP1O15259 C1D-204ENST00000410067 736 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
NPHP1O15259 EPGN-202ENST00000413830 1196 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
NPHP1O15259 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC4.23□□□□□ -1.73
NPHP1O15259 SKP1P1-201ENST00000438081 489 ntBASIC4.23□□□□□ -1.73
NPHP1O15259 AL354941.1-201ENST00000438600 464 ntBASIC4.23□□□□□ -1.73
NPHP1O15259 AL606662.1-201ENST00000445763 553 ntBASIC4.23□□□□□ -1.73
NPHP1O15259 IGKV1OR-3-201ENST00000446944 348 ntBASIC4.23□□□□□ -1.73
NPHP1O15259 AP000542.1-201ENST00000448473 371 ntBASIC4.23□□□□□ -1.73
NPHP1O15259 MTCO3P20-201ENST00000454926 688 ntBASIC4.23□□□□□ -1.73
NPHP1O15259 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC4.23□□□□□ -1.73
NPHP1O15259 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC4.23□□□□□ -1.73
NPHP1O15259 AC012181.1-201ENST00000479895 423 ntBASIC4.23□□□□□ -1.73
NPHP1O15259 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC4.23□□□□□ -1.73
NPHP1O15259 AC008489.1-201ENST00000524271 483 ntBASIC4.23□□□□□ -1.73
NPHP1O15259 AP003461.1-201ENST00000528866 78 ntBASIC4.23□□□□□ -1.73
NPHP1O15259 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
NPHP1O15259 APAF1-207ENST00000547743 651 ntTSL 3 BASIC4.23□□□□□ -1.73
NPHP1O15259 AC125611.2-201ENST00000551907 647 ntBASIC4.23□□□□□ -1.73
NPHP1O15259 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC4.23□□□□□ -1.73
NPHP1O15259 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC4.23□□□□□ -1.73
NPHP1O15259 MIR5047-201ENST00000579212 100 ntBASIC4.23□□□□□ -1.73
NPHP1O15259 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC4.23□□□□□ -1.73
NPHP1O15259 AC099811.4-201ENST00000592536 496 ntTSL 2 BASIC4.23□□□□□ -1.73
NPHP1O15259 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC4.23□□□□□ -1.73
NPHP1O15259 AC006539.2-201ENST00000601729 572 ntBASIC4.23□□□□□ -1.73
NPHP1O15259 AC009464.1-201ENST00000615731 469 ntBASIC4.23□□□□□ -1.73
NPHP1O15259 AC026422.1-201ENST00000623961 452 ntBASIC4.23□□□□□ -1.73
NPHP1O15259 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC4.23□□□□□ -1.73
NPHP1O15259 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC4.23□□□□□ -1.73
NPHP1O15259 AC127502.3-201ENST00000636170 1206 ntBASIC4.23□□□□□ -1.73
NPHP1O15259 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC4.23□□□□□ -1.73
NPHP1O15259 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC4.23□□□□□ -1.73
NPHP1O15259 AC073073.2-201ENST00000609827 2578 ntBASIC4.23□□□□□ -1.73
NPHP1O15259 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC4.22□□□□□ -1.73
NPHP1O15259 ZNF736P9Y-201ENST00000439586 1345 ntBASIC4.22□□□□□ -1.73
NPHP1O15259 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC4.22□□□□□ -1.73
NPHP1O15259 DEFB108F-201ENST00000344638 222 ntBASIC4.22□□□□□ -1.73
NPHP1O15259 RNA5SP88-201ENST00000365560 109 ntBASIC4.22□□□□□ -1.73
NPHP1O15259 RNU4-47P-201ENST00000410876 114 ntBASIC4.22□□□□□ -1.73
NPHP1O15259 MTCO1P17-201ENST00000411522 491 ntBASIC4.22□□□□□ -1.73
NPHP1O15259 AC109780.2-201ENST00000413467 845 ntBASIC4.22□□□□□ -1.73
NPHP1O15259 AC022537.1-201ENST00000435271 446 ntTSL 3 BASIC4.22□□□□□ -1.73
NPHP1O15259 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC4.22□□□□□ -1.73
NPHP1O15259 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC4.22□□□□□ -1.73
NPHP1O15259 NANOGNBP1-201ENST00000448444 480 ntBASIC4.22□□□□□ -1.73
NPHP1O15259 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC4.22□□□□□ -1.73
NPHP1O15259 AL049830.2-201ENST00000480072 201 ntBASIC4.22□□□□□ -1.73
NPHP1O15259 THAP6-203ENST00000502620 582 ntTSL 3 BASIC4.22□□□□□ -1.73
NPHP1O15259 ARL2BPP6-201ENST00000512757 439 ntBASIC4.22□□□□□ -1.73
NPHP1O15259 AC026801.2-201ENST00000515352 425 ntBASIC4.22□□□□□ -1.73
NPHP1O15259 RN7SKP83-201ENST00000516512 178 ntBASIC4.22□□□□□ -1.73
NPHP1O15259 SNORA31.22-201ENST00000517204 135 ntBASIC4.22□□□□□ -1.73
NPHP1O15259 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC4.22□□□□□ -1.73
NPHP1O15259 DEFB108D-201ENST00000527787 222 ntBASIC4.22□□□□□ -1.73
NPHP1O15259 DUXAP6-201ENST00000553858 601 ntBASIC4.22□□□□□ -1.73
NPHP1O15259 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC4.22□□□□□ -1.73
NPHP1O15259 AC105224.1-201ENST00000587055 421 ntBASIC4.22□□□□□ -1.73
NPHP1O15259 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC4.22□□□□□ -1.73
NPHP1O15259 AP002826.1-201ENST00000608835 315 ntBASIC4.22□□□□□ -1.73
NPHP1O15259 AC072039.2-201ENST00000608883 439 ntBASIC4.22□□□□□ -1.73
NPHP1O15259 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC4.22□□□□□ -1.73
NPHP1O15259 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC4.22□□□□□ -1.73
NPHP1O15259 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
NPHP1O15259 AC091152.2-201ENST00000591628 2569 ntBASIC4.21□□□□□ -1.73
NPHP1O15259 RNU6-1078P-201ENST00000364522 103 ntBASIC4.21□□□□□ -1.74
NPHP1O15259 RNU6-76P-201ENST00000384060 104 ntBASIC4.21□□□□□ -1.74
NPHP1O15259 MIR493-201ENST00000385254 89 ntBASIC4.21□□□□□ -1.74
NPHP1O15259 AC119751.3-201ENST00000399720 670 ntBASIC4.21□□□□□ -1.74
NPHP1O15259 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC4.21□□□□□ -1.74
NPHP1O15259 AC010099.3-201ENST00000423896 409 ntBASIC4.21□□□□□ -1.74
NPHP1O15259 AC006989.1-201ENST00000427212 131 ntBASIC4.21□□□□□ -1.74
NPHP1O15259 NEK4P1-201ENST00000433383 879 ntBASIC4.21□□□□□ -1.74
NPHP1O15259 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC4.21□□□□□ -1.74
NPHP1O15259 AC108734.1-201ENST00000439549 399 ntBASIC4.21□□□□□ -1.74
NPHP1O15259 AC112653.1-201ENST00000443851 386 ntBASIC4.21□□□□□ -1.74
NPHP1O15259 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC4.21□□□□□ -1.74
NPHP1O15259 MTCYBP3-201ENST00000445588 1137 ntBASIC4.21□□□□□ -1.74
NPHP1O15259 MTND1P9-201ENST00000453775 944 ntBASIC4.21□□□□□ -1.74
NPHP1O15259 S100A11P2-201ENST00000467589 312 ntBASIC4.21□□□□□ -1.74
NPHP1O15259 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC4.21□□□□□ -1.74
NPHP1O15259 AC006445.1-201ENST00000491925 405 ntBASIC4.21□□□□□ -1.74
NPHP1O15259 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC4.21□□□□□ -1.74
NPHP1O15259 AC118282.1-201ENST00000506408 765 ntBASIC4.21□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 74.4 ms