Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 DEFB108A-201ENST00000530110 222 ntBASIC3.32□□□□□ -1.88
CHMP1AQ9HD42 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC3.32□□□□□ -1.88
CHMP1AQ9HD42 RPL21P5-201ENST00000554662 472 ntBASIC3.32□□□□□ -1.88
CHMP1AQ9HD42 OR4H12P-201ENST00000556269 907 ntBASIC3.32□□□□□ -1.88
CHMP1AQ9HD42 LINC2194-202ENST00000567624 506 ntTSL 3 BASIC3.32□□□□□ -1.88
CHMP1AQ9HD42 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC3.32□□□□□ -1.88
CHMP1AQ9HD42 MIR3921-201ENST00000577308 85 ntBASIC3.32□□□□□ -1.88
CHMP1AQ9HD42 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC3.32□□□□□ -1.88
CHMP1AQ9HD42 MIR4293-201ENST00000584305 78 ntBASIC3.32□□□□□ -1.88
CHMP1AQ9HD42 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC3.32□□□□□ -1.88
CHMP1AQ9HD42 KC877982.1-201ENST00000602313 470 ntBASIC3.32□□□□□ -1.88
CHMP1AQ9HD42 AL606834.2-201ENST00000602954 668 ntBASIC3.32□□□□□ -1.88
CHMP1AQ9HD42 AL359999.1-201ENST00000604513 294 ntBASIC3.32□□□□□ -1.88
CHMP1AQ9HD42 AP002826.1-201ENST00000608835 315 ntBASIC3.32□□□□□ -1.88
CHMP1AQ9HD42 AC114781.5-201ENST00000615297 108 ntBASIC3.32□□□□□ -1.88
CHMP1AQ9HD42 AC011944.2-201ENST00000624440 683 ntBASIC3.32□□□□□ -1.88
CHMP1AQ9HD42 AL390237.1-201ENST00000404226 1415 ntBASIC3.32□□□□□ -1.88
CHMP1AQ9HD42 CEP170P1-201ENST00000502249 4587 ntBASIC3.32□□□□□ -1.88
CHMP1AQ9HD42 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC3.32□□□□□ -1.88
CHMP1AQ9HD42 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
CHMP1AQ9HD42 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC3.31□□□□□ -1.88
CHMP1AQ9HD42 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
CHMP1AQ9HD42 AC007496.3-201ENST00000624987 3443 ntBASIC3.31□□□□□ -1.88
CHMP1AQ9HD42 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC3.31□□□□□ -1.88
CHMP1AQ9HD42 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
CHMP1AQ9HD42 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.31□□□□□ -1.88
CHMP1AQ9HD42 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC3.31□□□□□ -1.88
CHMP1AQ9HD42 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
CHMP1AQ9HD42 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC3.31□□□□□ -1.88
CHMP1AQ9HD42 RNY4P16-201ENST00000364768 94 ntBASIC3.31□□□□□ -1.88
CHMP1AQ9HD42 MIR493-201ENST00000385254 89 ntBASIC3.31□□□□□ -1.88
CHMP1AQ9HD42 AC110754.1-201ENST00000399740 601 ntBASIC3.31□□□□□ -1.88
CHMP1AQ9HD42 HLFP1-201ENST00000402375 499 ntBASIC3.31□□□□□ -1.88
CHMP1AQ9HD42 AL590704.1-201ENST00000402856 794 ntBASIC3.31□□□□□ -1.88
CHMP1AQ9HD42 FCF1P10-201ENST00000407590 479 ntBASIC3.31□□□□□ -1.88
CHMP1AQ9HD42 RN7SKP285-201ENST00000410137 318 ntBASIC3.31□□□□□ -1.88
CHMP1AQ9HD42 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC3.31□□□□□ -1.88
CHMP1AQ9HD42 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC3.31□□□□□ -1.88
CHMP1AQ9HD42 RPL21P109-201ENST00000422213 475 ntBASIC3.31□□□□□ -1.88
CHMP1AQ9HD42 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC3.31□□□□□ -1.88
CHMP1AQ9HD42 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC3.31□□□□□ -1.88
CHMP1AQ9HD42 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC3.31□□□□□ -1.88
CHMP1AQ9HD42 AL031667.1-201ENST00000440222 725 ntBASIC3.31□□□□□ -1.88
CHMP1AQ9HD42 MTCO3P45-201ENST00000443036 613 ntBASIC3.31□□□□□ -1.88
CHMP1AQ9HD42 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC3.31□□□□□ -1.88
CHMP1AQ9HD42 ELOCP30-201ENST00000447108 299 ntBASIC3.31□□□□□ -1.88
CHMP1AQ9HD42 GAPDHP27-201ENST00000447427 1020 ntBASIC3.31□□□□□ -1.88
CHMP1AQ9HD42 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC3.31□□□□□ -1.88
CHMP1AQ9HD42 SNRPFP4-201ENST00000456366 242 ntBASIC3.31□□□□□ -1.88
CHMP1AQ9HD42 AC008481.1-201ENST00000463278 396 ntBASIC3.31□□□□□ -1.88
CHMP1AQ9HD42 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC3.31□□□□□ -1.88
CHMP1AQ9HD42 RPL31P60-201ENST00000478450 367 ntBASIC3.31□□□□□ -1.88
CHMP1AQ9HD42 ACTR3P3-201ENST00000480448 893 ntBASIC3.31□□□□□ -1.88
CHMP1AQ9HD42 AL049874.1-201ENST00000489560 388 ntBASIC3.31□□□□□ -1.88
CHMP1AQ9HD42 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
CHMP1AQ9HD42 AC010424.1-201ENST00000506336 297 ntBASIC3.31□□□□□ -1.88
CHMP1AQ9HD42 AL359273.1-201ENST00000510918 627 ntBASIC3.31□□□□□ -1.88
CHMP1AQ9HD42 RN7SKP83-201ENST00000516512 178 ntBASIC3.31□□□□□ -1.88
CHMP1AQ9HD42 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC3.31□□□□□ -1.88
CHMP1AQ9HD42 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC3.31□□□□□ -1.88
CHMP1AQ9HD42 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC3.31□□□□□ -1.88
CHMP1AQ9HD42 AC123904.3-201ENST00000547218 814 ntBASIC3.31□□□□□ -1.88
CHMP1AQ9HD42 AC091516.1-201ENST00000549191 703 ntBASIC3.31□□□□□ -1.88
CHMP1AQ9HD42 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC3.31□□□□□ -1.88
CHMP1AQ9HD42 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC3.31□□□□□ -1.88
CHMP1AQ9HD42 AC055876.1-202ENST00000567053 138 ntBASIC3.31□□□□□ -1.88
CHMP1AQ9HD42 MIR4277-201ENST00000578298 84 ntBASIC3.31□□□□□ -1.88
CHMP1AQ9HD42 MIR4330-201ENST00000579077 105 ntBASIC3.31□□□□□ -1.88
CHMP1AQ9HD42 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC3.31□□□□□ -1.88
CHMP1AQ9HD42 RSL24D1P11-201ENST00000591045 491 ntBASIC3.31□□□□□ -1.88
CHMP1AQ9HD42 BNIP3P8-201ENST00000597863 560 ntBASIC3.31□□□□□ -1.88
CHMP1AQ9HD42 AC015726.1-201ENST00000602353 681 ntBASIC3.31□□□□□ -1.88
CHMP1AQ9HD42 AC121334.2-201ENST00000605387 271 ntBASIC3.31□□□□□ -1.88
CHMP1AQ9HD42 BRDTP1-201ENST00000605735 677 ntBASIC3.31□□□□□ -1.88
CHMP1AQ9HD42 RNU6-87P-201ENST00000607561 108 ntBASIC3.31□□□□□ -1.88
CHMP1AQ9HD42 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC3.31□□□□□ -1.88
CHMP1AQ9HD42 MIR6868-201ENST00000611215 58 ntBASIC3.31□□□□□ -1.88
CHMP1AQ9HD42 AC090970.3-201ENST00000612566 866 ntBASIC3.31□□□□□ -1.88
CHMP1AQ9HD42 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC3.31□□□□□ -1.88
CHMP1AQ9HD42 AC090132.2-201ENST00000615881 347 ntBASIC3.31□□□□□ -1.88
CHMP1AQ9HD42 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
CHMP1AQ9HD42 MIR8059-201ENST00000620427 81 ntBASIC3.31□□□□□ -1.88
CHMP1AQ9HD42 PLCE1P1-201ENST00000622094 305 ntBASIC3.31□□□□□ -1.88
CHMP1AQ9HD42 AP000346.3-201ENST00000622821 210 ntBASIC3.31□□□□□ -1.88
CHMP1AQ9HD42 AC091905.1-201ENST00000624400 311 ntBASIC3.31□□□□□ -1.88
CHMP1AQ9HD42 MIR3653-201ENST00000625572 110 ntBASIC3.31□□□□□ -1.88
CHMP1AQ9HD42 MIR4275-201ENST00000636486 87 ntBASIC3.31□□□□□ -1.88
CHMP1AQ9HD42 AP003399.1-201ENST00000637534 361 ntBASIC3.31□□□□□ -1.88
CHMP1AQ9HD42 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC3.31□□□□□ -1.88
CHMP1AQ9HD42 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.31□□□□□ -1.88
CHMP1AQ9HD42 PAPPA-AS1-201ENST00000445861 2450 ntBASIC3.3□□□□□ -1.88
CHMP1AQ9HD42 Y_RNA.51-201ENST00000362725 102 ntBASIC3.3□□□□□ -1.88
CHMP1AQ9HD42 RNU4-1-201ENST00000363925 141 ntBASIC3.3□□□□□ -1.88
CHMP1AQ9HD42 Y_RNA.553-201ENST00000384670 102 ntBASIC3.3□□□□□ -1.88
CHMP1AQ9HD42 MIR514A1-201ENST00000385133 98 ntBASIC3.3□□□□□ -1.88
CHMP1AQ9HD42 SNORA40.3-201ENST00000390964 122 ntBASIC3.3□□□□□ -1.88
CHMP1AQ9HD42 AL591034.1-201ENST00000407447 340 ntBASIC3.3□□□□□ -1.88
CHMP1AQ9HD42 RNA5SP107-201ENST00000411358 122 ntBASIC3.3□□□□□ -1.88
CHMP1AQ9HD42 RPL21P24-201ENST00000413752 448 ntBASIC3.3□□□□□ -1.88
CHMP1AQ9HD42 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC3.3□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 113.4 ms