Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 RNA5SP258-201ENST00000362750 119 ntBASIC3.72□□□□□ -1.81
ZNF541Q9H0D2 XGY1-201ENST00000381172 446 ntBASIC3.72□□□□□ -1.81
ZNF541Q9H0D2 SNORD15B-201ENST00000384714 146 ntBASIC3.72□□□□□ -1.81
ZNF541Q9H0D2 MYO16-AS2-201ENST00000412809 436 ntTSL 3 BASIC3.72□□□□□ -1.81
ZNF541Q9H0D2 AC244098.2-201ENST00000422068 99 ntBASIC3.72□□□□□ -1.81
ZNF541Q9H0D2 AC011233.1-201ENST00000422812 283 ntBASIC3.72□□□□□ -1.81
ZNF541Q9H0D2 MTND4P20-201ENST00000424125 869 ntBASIC3.72□□□□□ -1.81
ZNF541Q9H0D2 RPS6P15-201ENST00000431996 751 ntBASIC3.72□□□□□ -1.81
ZNF541Q9H0D2 RNU7-136P-201ENST00000458819 69 ntBASIC3.72□□□□□ -1.81
ZNF541Q9H0D2 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
ZNF541Q9H0D2 AC072039.1-201ENST00000477611 581 ntBASIC3.72□□□□□ -1.81
ZNF541Q9H0D2 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC3.72□□□□□ -1.81
ZNF541Q9H0D2 YWHAEP4-201ENST00000505390 198 ntBASIC3.72□□□□□ -1.81
ZNF541Q9H0D2 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC3.72□□□□□ -1.81
ZNF541Q9H0D2 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC3.72□□□□□ -1.81
ZNF541Q9H0D2 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC3.72□□□□□ -1.81
ZNF541Q9H0D2 RNA5SP309-201ENST00000516670 106 ntBASIC3.72□□□□□ -1.81
ZNF541Q9H0D2 RN7SKP272-201ENST00000516988 232 ntBASIC3.72□□□□□ -1.81
ZNF541Q9H0D2 IGHVII-62-1-201ENST00000519283 235 ntBASIC3.72□□□□□ -1.81
ZNF541Q9H0D2 AC092851.1-201ENST00000535964 478 ntBASIC3.72□□□□□ -1.81
ZNF541Q9H0D2 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC3.72□□□□□ -1.81
ZNF541Q9H0D2 AC012435.1-202ENST00000568772 240 ntBASIC3.72□□□□□ -1.81
ZNF541Q9H0D2 AL353778.1-201ENST00000603149 408 ntBASIC3.72□□□□□ -1.81
ZNF541Q9H0D2 AL596327.1-201ENST00000603629 213 ntBASIC3.72□□□□□ -1.81
ZNF541Q9H0D2 AC106791.2-201ENST00000604680 391 ntBASIC3.72□□□□□ -1.81
ZNF541Q9H0D2 AC055876.5-201ENST00000605667 259 ntBASIC3.72□□□□□ -1.81
ZNF541Q9H0D2 TUG1_1.1-201ENST00000610654 145 ntBASIC3.72□□□□□ -1.81
ZNF541Q9H0D2 AC087241.4-201ENST00000612441 480 ntBASIC3.72□□□□□ -1.81
ZNF541Q9H0D2 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.72□□□□□ -1.81
ZNF541Q9H0D2 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.72□□□□□ -1.81
ZNF541Q9H0D2 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.72□□□□□ -1.81
ZNF541Q9H0D2 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC3.72□□□□□ -1.81
ZNF541Q9H0D2 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC3.72□□□□□ -1.81
ZNF541Q9H0D2 AC097714.1-201ENST00000511272 1647 ntBASIC3.71□□□□□ -1.81
ZNF541Q9H0D2 NFIB-202ENST00000380924 840 ntTSL 5 BASIC3.71□□□□□ -1.81
ZNF541Q9H0D2 HMGB1P17-201ENST00000403495 628 ntBASIC3.71□□□□□ -1.81
ZNF541Q9H0D2 RHEBP3-201ENST00000411920 351 ntBASIC3.71□□□□□ -1.81
ZNF541Q9H0D2 TEX41-204ENST00000423031 491 ntTSL 4 BASIC3.71□□□□□ -1.81
ZNF541Q9H0D2 AC006548.1-201ENST00000427470 102 ntBASIC3.71□□□□□ -1.81
ZNF541Q9H0D2 RPL23AP82-202ENST00000427528 469 ntBASIC3.71□□□□□ -1.81
ZNF541Q9H0D2 AL365396.1-201ENST00000430854 671 ntBASIC3.71□□□□□ -1.81
ZNF541Q9H0D2 MUPP-201ENST00000438111 566 ntBASIC3.71□□□□□ -1.81
ZNF541Q9H0D2 MTND5P2-201ENST00000442927 1142 ntBASIC3.71□□□□□ -1.81
ZNF541Q9H0D2 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC3.71□□□□□ -1.81
ZNF541Q9H0D2 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC3.71□□□□□ -1.81
ZNF541Q9H0D2 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC3.71□□□□□ -1.81
ZNF541Q9H0D2 CENPBD1P1-201ENST00000464061 469 ntBASIC3.71□□□□□ -1.81
ZNF541Q9H0D2 AC117440.1-201ENST00000474107 571 ntBASIC3.71□□□□□ -1.81
ZNF541Q9H0D2 COX7A2P2-201ENST00000505291 250 ntBASIC3.71□□□□□ -1.81
ZNF541Q9H0D2 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC3.71□□□□□ -1.81
ZNF541Q9H0D2 AC006499.2-201ENST00000513470 337 ntBASIC3.71□□□□□ -1.81
ZNF541Q9H0D2 RNU6-678P-201ENST00000516832 109 ntBASIC3.71□□□□□ -1.81
ZNF541Q9H0D2 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC3.71□□□□□ -1.81
ZNF541Q9H0D2 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC3.71□□□□□ -1.81
ZNF541Q9H0D2 MIR5047-201ENST00000579212 100 ntBASIC3.71□□□□□ -1.81
ZNF541Q9H0D2 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.81
ZNF541Q9H0D2 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC3.71□□□□□ -1.81
ZNF541Q9H0D2 BDH2P1-201ENST00000602288 736 ntBASIC3.71□□□□□ -1.81
ZNF541Q9H0D2 KLRF1-207ENST00000617793 1096 ntTSL 1 (best) BASIC3.71□□□□□ -1.81
ZNF541Q9H0D2 Xist_exon1.1-201ENST00000618930 85 ntBASIC3.71□□□□□ -1.81
ZNF541Q9H0D2 AL356596.1-201ENST00000624230 379 ntBASIC3.71□□□□□ -1.81
ZNF541Q9H0D2 CR381572.1-201ENST00000625098 102 ntBASIC3.71□□□□□ -1.81
ZNF541Q9H0D2 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.81
ZNF541Q9H0D2 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.81
ZNF541Q9H0D2 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC3.71□□□□□ -1.82
ZNF541Q9H0D2 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
ZNF541Q9H0D2 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.71□□□□□ -1.82
ZNF541Q9H0D2 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
ZNF541Q9H0D2 EXOC5P1-201ENST00000510543 1969 ntBASIC3.71□□□□□ -1.82
ZNF541Q9H0D2 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.71□□□□□ -1.82
ZNF541Q9H0D2 AC087359.1-201ENST00000508335 1740 ntBASIC3.71□□□□□ -1.82
ZNF541Q9H0D2 RNU6-289P-201ENST00000364093 107 ntBASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 RNU6-952P-201ENST00000391164 108 ntBASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 RPS3AP26-201ENST00000398259 784 ntBASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 MIR1183-201ENST00000408856 89 ntBASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 TPMTP2-201ENST00000414372 726 ntBASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 MTCO3P12-201ENST00000416718 547 ntBASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 MTCYBP39-201ENST00000437562 491 ntBASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 SDCBPP1-201ENST00000440192 890 ntBASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 USP9YP10-201ENST00000454868 628 ntBASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 BX322784.1-201ENST00000455793 1077 ntBASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 APOA2-205ENST00000468465 421 ntTSL 2 BASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 TRBV12-1-201ENST00000479785 344 ntBASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 RPS4XP13-201ENST00000483219 789 ntBASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 RPS3AP22-201ENST00000488297 769 ntBASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 AHI1-208ENST00000488690 712 ntTSL 5 BASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 AC068305.1-201ENST00000497406 726 ntBASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 USP9YP5-201ENST00000511770 630 ntBASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 AC114781.4-201ENST00000513707 639 ntBASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 RNA5SP216-201ENST00000516111 123 ntBASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 EEF1B2P4-201ENST00000551398 348 ntBASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC3.7□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 103.4 ms