Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC2.65□□□□□ -1.99
CDX2Q99626 AC107222.1-201ENST00000510899 637 ntBASIC2.65□□□□□ -1.99
CDX2Q99626 MTCO3P44-201ENST00000510977 541 ntBASIC2.65□□□□□ -1.99
CDX2Q99626 AC093772.1-201ENST00000513519 506 ntTSL 2 BASIC2.65□□□□□ -1.99
CDX2Q99626 SNORD59.2-201ENST00000516873 68 ntBASIC2.65□□□□□ -1.99
CDX2Q99626 SNORA31.26-201ENST00000517250 137 ntBASIC2.65□□□□□ -1.99
CDX2Q99626 RRAS2-205ENST00000529237 1278 ntTSL 2 BASIC2.65□□□□□ -1.99
CDX2Q99626 OR4A45P-201ENST00000529954 901 ntBASIC2.65□□□□□ -1.99
CDX2Q99626 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC2.65□□□□□ -1.99
CDX2Q99626 AC128657.1-201ENST00000549459 145 ntBASIC2.65□□□□□ -1.99
CDX2Q99626 NIFKP8-201ENST00000560500 874 ntBASIC2.65□□□□□ -1.99
CDX2Q99626 AL035071.2-201ENST00000565572 459 ntTSL 3 BASIC2.65□□□□□ -1.99
CDX2Q99626 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC2.65□□□□□ -1.99
CDX2Q99626 AC090115.4-201ENST00000609970 188 ntBASIC2.65□□□□□ -1.99
CDX2Q99626 AP005229.2-201ENST00000609980 697 ntBASIC2.65□□□□□ -1.99
CDX2Q99626 MIR6873-201ENST00000622788 63 ntBASIC2.65□□□□□ -1.99
CDX2Q99626 AC098679.5-201ENST00000624394 571 ntBASIC2.65□□□□□ -1.99
CDX2Q99626 AC106730.3-201ENST00000624568 641 ntBASIC2.65□□□□□ -1.99
CDX2Q99626 AC068620.4-201ENST00000636730 1182 ntBASIC2.65□□□□□ -1.99
CDX2Q99626 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC2.65□□□□□ -1.99
CDX2Q99626 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC2.65□□□□□ -1.99
CDX2Q99626 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.99
CDX2Q99626 KTN1-223ENST00000555573 1712 ntTSL 2 BASIC2.65□□□□□ -1.99
CDX2Q99626 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.99
CDX2Q99626 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC2.64□□□□□ -1.99
CDX2Q99626 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
CDX2Q99626 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.64□□□□□ -1.99
CDX2Q99626 ZNF734P-201ENST00000419494 1534 ntBASIC2.64□□□□□ -1.99
CDX2Q99626 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC2.64□□□□□ -1.99
CDX2Q99626 OR8K1-201ENST00000279783 1087 ntAPPRIS P1 BASIC2.64□□□□□ -1.99
CDX2Q99626 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC2.64□□□□□ -1.99
CDX2Q99626 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC2.64□□□□□ -1.99
CDX2Q99626 RNU6-374P-201ENST00000364146 108 ntBASIC2.64□□□□□ -1.99
CDX2Q99626 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC2.64□□□□□ -1.99
CDX2Q99626 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC2.64□□□□□ -1.99
CDX2Q99626 OR1L1-202ENST00000373686 1083 ntBASIC2.64□□□□□ -1.99
CDX2Q99626 RNU6-549P-201ENST00000384433 107 ntBASIC2.64□□□□□ -1.99
CDX2Q99626 SNORA80E-201ENST00000384744 137 ntBASIC2.64□□□□□ -1.99
CDX2Q99626 MIR649-201ENST00000384843 97 ntBASIC2.64□□□□□ -1.99
CDX2Q99626 MIR181A2-201ENST00000384863 110 ntBASIC2.64□□□□□ -1.99
CDX2Q99626 SSXP10-201ENST00000402595 565 ntBASIC2.64□□□□□ -1.99
CDX2Q99626 MTCO2P31-201ENST00000402702 684 ntBASIC2.64□□□□□ -1.99
CDX2Q99626 RNA5SP129-201ENST00000410276 118 ntBASIC2.64□□□□□ -1.99
CDX2Q99626 RNU2-72P-201ENST00000411175 163 ntBASIC2.64□□□□□ -1.99
CDX2Q99626 RNU6-575P-201ENST00000411326 105 ntBASIC2.64□□□□□ -1.99
CDX2Q99626 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC2.64□□□□□ -1.99
CDX2Q99626 AC010967.1-201ENST00000421575 489 ntTSL 5 BASIC2.64□□□□□ -1.99
CDX2Q99626 SFR1P2-201ENST00000421841 730 ntBASIC2.64□□□□□ -1.99
CDX2Q99626 AC012498.1-201ENST00000424037 437 ntBASIC2.64□□□□□ -1.99
CDX2Q99626 AC006548.1-201ENST00000427470 102 ntBASIC2.64□□□□□ -1.99
CDX2Q99626 AC011753.1-201ENST00000451001 220 ntBASIC2.64□□□□□ -1.99
CDX2Q99626 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC2.64□□□□□ -1.99
CDX2Q99626 HMGN3P1-201ENST00000453847 193 ntBASIC2.64□□□□□ -1.99
CDX2Q99626 RPL23AP31-201ENST00000456160 467 ntBASIC2.64□□□□□ -1.99
CDX2Q99626 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC2.64□□□□□ -1.99
CDX2Q99626 ENSA-210ENST00000503241 574 ntTSL 3 BASIC2.64□□□□□ -1.99
CDX2Q99626 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC2.64□□□□□ -1.99
CDX2Q99626 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC2.64□□□□□ -1.99
CDX2Q99626 AC119751.1-201ENST00000513357 765 ntBASIC2.64□□□□□ -1.99
CDX2Q99626 RNU1-61P-201ENST00000516107 151 ntBASIC2.64□□□□□ -1.99
CDX2Q99626 HSPE1P18-201ENST00000517602 280 ntBASIC2.64□□□□□ -1.99
CDX2Q99626 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC2.64□□□□□ -1.99
CDX2Q99626 AC023442.2-201ENST00000526455 270 ntTSL 3 BASIC2.64□□□□□ -1.99
CDX2Q99626 AC021269.2-201ENST00000532318 330 ntBASIC2.64□□□□□ -1.99
CDX2Q99626 PDZD9-203ENST00000537222 1068 ntTSL 3 BASIC2.64□□□□□ -1.99
CDX2Q99626 AC026464.5-201ENST00000562497 722 ntBASIC2.64□□□□□ -1.99
CDX2Q99626 AC107954.1-201ENST00000565906 727 ntBASIC2.64□□□□□ -1.99
CDX2Q99626 STARD13-AS-208ENST00000589472 859 ntTSL 5 BASIC2.64□□□□□ -1.99
CDX2Q99626 AL669831.4-202ENST00000590817 238 ntBASIC2.64□□□□□ -1.99
CDX2Q99626 AC113368.1-201ENST00000603736 382 ntBASIC2.64□□□□□ -1.99
CDX2Q99626 AC009318.2-201ENST00000610917 651 ntBASIC2.64□□□□□ -1.99
CDX2Q99626 CR381572.1-201ENST00000625098 102 ntBASIC2.64□□□□□ -1.99
CDX2Q99626 AL590396.4-201ENST00000636779 956 ntBASIC2.64□□□□□ -1.99
CDX2Q99626 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.64□□□□□ -1.99
CDX2Q99626 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
CDX2Q99626 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC2.64□□□□□ -1.99
CDX2Q99626 AK9-203ENST00000368948 2478 ntTSL 5 BASIC2.63□□□□□ -1.99
CDX2Q99626 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC2.63□□□□□ -1.99
CDX2Q99626 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC2.63□□□□□ -1.99
CDX2Q99626 DEFB109C-201ENST00000382575 264 ntBASIC2.63□□□□□ -1.99
CDX2Q99626 DEFB109B-201ENST00000382656 264 ntBASIC2.63□□□□□ -1.99
CDX2Q99626 AL139098.1-201ENST00000407291 389 ntBASIC2.63□□□□□ -1.99
CDX2Q99626 AL391863.2-201ENST00000411838 681 ntTSL 2 BASIC2.63□□□□□ -1.99
CDX2Q99626 AL159990.1-201ENST00000415119 337 ntTSL 3 BASIC2.63□□□□□ -1.99
CDX2Q99626 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC2.63□□□□□ -1.99
CDX2Q99626 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC2.63□□□□□ -1.99
CDX2Q99626 USP9YP20-201ENST00000419224 558 ntBASIC2.63□□□□□ -1.99
CDX2Q99626 AC096632.1-201ENST00000427395 310 ntBASIC2.63□□□□□ -1.99
CDX2Q99626 LAMTOR3P1-201ENST00000428620 370 ntBASIC2.63□□□□□ -1.99
CDX2Q99626 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC2.63□□□□□ -1.99
CDX2Q99626 RPS7P2-201ENST00000435134 607 ntBASIC2.63□□□□□ -1.99
CDX2Q99626 SETP8-201ENST00000435341 628 ntBASIC2.63□□□□□ -1.99
CDX2Q99626 AL159990.2-201ENST00000436491 337 ntTSL 3 BASIC2.63□□□□□ -1.99
CDX2Q99626 NDUFA5P4-201ENST00000436704 385 ntBASIC2.63□□□□□ -1.99
CDX2Q99626 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC2.63□□□□□ -1.99
CDX2Q99626 AL354994.1-201ENST00000445967 194 ntTSL 5 BASIC2.63□□□□□ -1.99
CDX2Q99626 RPS24P6-201ENST00000452670 400 ntBASIC2.63□□□□□ -1.99
CDX2Q99626 RPL23AP45-201ENST00000476406 468 ntBASIC2.63□□□□□ -1.99
CDX2Q99626 RPL23AP49-201ENST00000492925 468 ntBASIC2.63□□□□□ -1.99
CDX2Q99626 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC2.63□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 115.2 ms