Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 AC008885.1-201ENST00000514930 301 ntBASIC3.42□□□□□ -1.86
CCDC43Q96MW1 CASP1P1-201ENST00000526345 212 ntBASIC3.42□□□□□ -1.86
CCDC43Q96MW1 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC3.42□□□□□ -1.86
CCDC43Q96MW1 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC3.42□□□□□ -1.86
CCDC43Q96MW1 ZKSCAN7P1-201ENST00000543668 673 ntBASIC3.42□□□□□ -1.86
CCDC43Q96MW1 H3F3AP1-201ENST00000559984 334 ntBASIC3.42□□□□□ -1.86
CCDC43Q96MW1 AADACP1-206ENST00000561502 1193 ntBASIC3.42□□□□□ -1.86
CCDC43Q96MW1 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC3.42□□□□□ -1.86
CCDC43Q96MW1 AL512347.1-201ENST00000566420 503 ntBASIC3.42□□□□□ -1.86
CCDC43Q96MW1 AC010127.1-205ENST00000595268 567 ntTSL 5 BASIC3.42□□□□□ -1.86
CCDC43Q96MW1 AC009269.6-201ENST00000621778 588 ntBASIC3.42□□□□□ -1.86
CCDC43Q96MW1 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC3.42□□□□□ -1.86
CCDC43Q96MW1 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
CCDC43Q96MW1 AL079343.1-201ENST00000572358 1771 ntBASIC3.42□□□□□ -1.86
CCDC43Q96MW1 AC000403.1-201ENST00000613696 3585 ntBASIC3.42□□□□□ -1.86
CCDC43Q96MW1 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC3.42□□□□□ -1.86
CCDC43Q96MW1 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.42□□□□□ -1.86
CCDC43Q96MW1 AC005539.1-201ENST00000443768 1479 ntBASIC3.41□□□□□ -1.86
CCDC43Q96MW1 AC110774.1-201ENST00000623567 2018 ntBASIC3.41□□□□□ -1.86
CCDC43Q96MW1 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC3.41□□□□□ -1.86
CCDC43Q96MW1 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC3.41□□□□□ -1.86
CCDC43Q96MW1 RNU6-343P-201ENST00000364709 104 ntBASIC3.41□□□□□ -1.86
CCDC43Q96MW1 MLLT3-201ENST00000380321 708 ntTSL 3 BASIC3.41□□□□□ -1.86
CCDC43Q96MW1 RNU6-1197P-201ENST00000391183 107 ntBASIC3.41□□□□□ -1.86
CCDC43Q96MW1 RNA5SP274-201ENST00000410484 108 ntBASIC3.41□□□□□ -1.86
CCDC43Q96MW1 OFD1P1Y-201ENST00000411756 1225 ntBASIC3.41□□□□□ -1.86
CCDC43Q96MW1 CCDC58P2-201ENST00000417131 366 ntBASIC3.41□□□□□ -1.86
CCDC43Q96MW1 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC3.41□□□□□ -1.86
CCDC43Q96MW1 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC3.41□□□□□ -1.86
CCDC43Q96MW1 BX322784.1-201ENST00000455793 1077 ntBASIC3.41□□□□□ -1.86
CCDC43Q96MW1 AF129075.1-201ENST00000457162 794 ntTSL 3 BASIC3.41□□□□□ -1.86
CCDC43Q96MW1 AC097493.1-201ENST00000463958 372 ntBASIC3.41□□□□□ -1.86
CCDC43Q96MW1 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC3.41□□□□□ -1.86
CCDC43Q96MW1 RPL31P50-201ENST00000471002 296 ntBASIC3.41□□□□□ -1.86
CCDC43Q96MW1 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC3.41□□□□□ -1.86
CCDC43Q96MW1 AC006445.2-201ENST00000510061 472 ntBASIC3.41□□□□□ -1.86
CCDC43Q96MW1 AC026780.1-201ENST00000512237 952 ntTSL 3 BASIC3.41□□□□□ -1.86
CCDC43Q96MW1 AC125611.2-201ENST00000551907 647 ntBASIC3.41□□□□□ -1.86
CCDC43Q96MW1 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC3.41□□□□□ -1.86
CCDC43Q96MW1 MIR3921-201ENST00000577308 85 ntBASIC3.41□□□□□ -1.86
CCDC43Q96MW1 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC3.41□□□□□ -1.86
CCDC43Q96MW1 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC3.41□□□□□ -1.86
CCDC43Q96MW1 AP001429.1-201ENST00000602568 530 ntBASIC3.41□□□□□ -1.86
CCDC43Q96MW1 AC005014.3-201ENST00000605985 190 ntBASIC3.41□□□□□ -1.86
CCDC43Q96MW1 AL138880.2-201ENST00000616214 239 ntBASIC3.41□□□□□ -1.86
CCDC43Q96MW1 AC091046.2-201ENST00000620775 665 ntBASIC3.41□□□□□ -1.86
CCDC43Q96MW1 AC027309.3-201ENST00000623419 351 ntBASIC3.41□□□□□ -1.86
CCDC43Q96MW1 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC3.41□□□□□ -1.86
CCDC43Q96MW1 AL121759.2-201ENST00000636173 570 ntTSL 4 BASIC3.41□□□□□ -1.86
CCDC43Q96MW1 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.41□□□□□ -1.86
CCDC43Q96MW1 AL365361.1-201ENST00000566942 3481 ntBASIC3.41□□□□□ -1.86
CCDC43Q96MW1 AC008264.2-201ENST00000610193 3731 ntBASIC3.4□□□□□ -1.86
CCDC43Q96MW1 OR5AC2-201ENST00000358642 930 ntAPPRIS P1 BASIC3.4□□□□□ -1.87
CCDC43Q96MW1 SNORA48.5-201ENST00000391143 135 ntBASIC3.4□□□□□ -1.87
CCDC43Q96MW1 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.4□□□□□ -1.87
CCDC43Q96MW1 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC3.4□□□□□ -1.87
CCDC43Q96MW1 AC245054.2-201ENST00000415639 319 ntBASIC3.4□□□□□ -1.87
CCDC43Q96MW1 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC3.4□□□□□ -1.87
CCDC43Q96MW1 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC3.4□□□□□ -1.87
CCDC43Q96MW1 AC007327.1-201ENST00000447461 264 ntBASIC3.4□□□□□ -1.87
CCDC43Q96MW1 ARPC3P5-201ENST00000448802 534 ntBASIC3.4□□□□□ -1.87
CCDC43Q96MW1 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC3.4□□□□□ -1.87
CCDC43Q96MW1 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC3.4□□□□□ -1.87
CCDC43Q96MW1 OR2A20P-203ENST00000498397 1268 ntBASIC3.4□□□□□ -1.87
CCDC43Q96MW1 RNU6-528P-201ENST00000516926 100 ntBASIC3.4□□□□□ -1.87
CCDC43Q96MW1 AC021451.1-201ENST00000523498 1129 ntBASIC3.4□□□□□ -1.87
CCDC43Q96MW1 AC239860.2-201ENST00000525886 270 ntBASIC3.4□□□□□ -1.87
CCDC43Q96MW1 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
CCDC43Q96MW1 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
CCDC43Q96MW1 AC022080.3-201ENST00000544433 482 ntBASIC3.4□□□□□ -1.87
CCDC43Q96MW1 LINC02410-201ENST00000553095 393 ntTSL 2 BASIC3.4□□□□□ -1.87
CCDC43Q96MW1 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC3.4□□□□□ -1.87
CCDC43Q96MW1 MIR3200-201ENST00000580767 85 ntBASIC3.4□□□□□ -1.87
CCDC43Q96MW1 AC006213.4-201ENST00000616184 634 ntBASIC3.4□□□□□ -1.87
CCDC43Q96MW1 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC3.4□□□□□ -1.87
CCDC43Q96MW1 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
CCDC43Q96MW1 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
CCDC43Q96MW1 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.39□□□□□ -1.87
CCDC43Q96MW1 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
CCDC43Q96MW1 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
CCDC43Q96MW1 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC3.39□□□□□ -1.87
CCDC43Q96MW1 RNU1-140P-201ENST00000365040 165 ntBASIC3.39□□□□□ -1.87
CCDC43Q96MW1 RNU6-76P-201ENST00000384060 104 ntBASIC3.39□□□□□ -1.87
CCDC43Q96MW1 SNORA46-201ENST00000384762 135 ntBASIC3.39□□□□□ -1.87
CCDC43Q96MW1 MIR128-1-201ENST00000384921 82 ntBASIC3.39□□□□□ -1.87
CCDC43Q96MW1 MIR122-201ENST00000385044 85 ntBASIC3.39□□□□□ -1.87
CCDC43Q96MW1 AL161909.2-201ENST00000417577 409 ntTSL 5 BASIC3.39□□□□□ -1.87
CCDC43Q96MW1 AC010967.1-201ENST00000421575 489 ntTSL 5 BASIC3.39□□□□□ -1.87
CCDC43Q96MW1 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC3.39□□□□□ -1.87
CCDC43Q96MW1 AC090774.1-201ENST00000435925 246 ntBASIC3.39□□□□□ -1.87
CCDC43Q96MW1 SNRPGP6-201ENST00000451124 220 ntBASIC3.39□□□□□ -1.87
CCDC43Q96MW1 UQCRHP3-201ENST00000451503 251 ntBASIC3.39□□□□□ -1.87
CCDC43Q96MW1 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC3.39□□□□□ -1.87
CCDC43Q96MW1 AC026719.1-201ENST00000506059 456 ntTSL 3 BASIC3.39□□□□□ -1.87
CCDC43Q96MW1 AC118282.1-201ENST00000506408 765 ntBASIC3.39□□□□□ -1.87
CCDC43Q96MW1 RNU6-798P-201ENST00000516912 103 ntBASIC3.39□□□□□ -1.87
CCDC43Q96MW1 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC3.39□□□□□ -1.87
CCDC43Q96MW1 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC3.39□□□□□ -1.87
CCDC43Q96MW1 PSMA2P1-201ENST00000526365 646 ntBASIC3.39□□□□□ -1.87
CCDC43Q96MW1 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC3.39□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 99.7 ms