Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 AC019226.1-201ENST00000625666 515 ntBASIC3.36□□□□□ -1.87
VMP1Q96GC9 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC3.36□□□□□ -1.87
VMP1Q96GC9 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
VMP1Q96GC9 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC3.35□□□□□ -1.87
VMP1Q96GC9 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.35□□□□□ -1.87
VMP1Q96GC9 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
VMP1Q96GC9 AC007823.1-201ENST00000569932 1566 ntBASIC3.35□□□□□ -1.87
VMP1Q96GC9 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC3.35□□□□□ -1.87
VMP1Q96GC9 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
VMP1Q96GC9 SNORD21-201ENST00000383953 95 ntBASIC3.35□□□□□ -1.87
VMP1Q96GC9 MIR218-2-201ENST00000385006 110 ntBASIC3.35□□□□□ -1.87
VMP1Q96GC9 RNU6-754P-201ENST00000391166 107 ntBASIC3.35□□□□□ -1.87
VMP1Q96GC9 RNA5SP354-201ENST00000391247 136 ntBASIC3.35□□□□□ -1.87
VMP1Q96GC9 RN7SKP220-201ENST00000410611 288 ntBASIC3.35□□□□□ -1.87
VMP1Q96GC9 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC3.35□□□□□ -1.87
VMP1Q96GC9 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC3.35□□□□□ -1.87
VMP1Q96GC9 AC009313.1-201ENST00000425470 503 ntTSL 3 BASIC3.35□□□□□ -1.87
VMP1Q96GC9 AC092648.1-201ENST00000425870 423 ntBASIC3.35□□□□□ -1.87
VMP1Q96GC9 BX890604.2-201ENST00000427883 474 ntBASIC3.35□□□□□ -1.87
VMP1Q96GC9 CYCSP4-201ENST00000429682 331 ntBASIC3.35□□□□□ -1.87
VMP1Q96GC9 NDUFB1P1-201ENST00000435191 180 ntBASIC3.35□□□□□ -1.87
VMP1Q96GC9 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC3.35□□□□□ -1.87
VMP1Q96GC9 PDSS1P2-201ENST00000449397 678 ntBASIC3.35□□□□□ -1.87
VMP1Q96GC9 AC021205.2-201ENST00000480069 347 ntBASIC3.35□□□□□ -1.87
VMP1Q96GC9 HMGB1P36-201ENST00000487709 576 ntBASIC3.35□□□□□ -1.87
VMP1Q96GC9 WDR78-207ENST00000488333 613 ntTSL 3 BASIC3.35□□□□□ -1.87
VMP1Q96GC9 CFLAR-225ENST00000494258 693 ntTSL 3 BASIC3.35□□□□□ -1.87
VMP1Q96GC9 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC3.35□□□□□ -1.87
VMP1Q96GC9 AC068657.1-201ENST00000520807 306 ntBASIC3.35□□□□□ -1.87
VMP1Q96GC9 AP000926.4-201ENST00000527351 454 ntBASIC3.35□□□□□ -1.87
VMP1Q96GC9 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC3.35□□□□□ -1.87
VMP1Q96GC9 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC3.35□□□□□ -1.87
VMP1Q96GC9 AC023908.1-201ENST00000559899 567 ntTSL 4 BASIC3.35□□□□□ -1.87
VMP1Q96GC9 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC3.35□□□□□ -1.87
VMP1Q96GC9 MIR4444-1-201ENST00000581696 74 ntBASIC3.35□□□□□ -1.87
VMP1Q96GC9 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC3.35□□□□□ -1.87
VMP1Q96GC9 MIR4444-2-201ENST00000584390 74 ntBASIC3.35□□□□□ -1.87
VMP1Q96GC9 AC020895.1-201ENST00000595362 272 ntBASIC3.35□□□□□ -1.87
VMP1Q96GC9 RNU4-5P-201ENST00000607255 135 ntBASIC3.35□□□□□ -1.87
VMP1Q96GC9 U3.45-201ENST00000607547 219 ntBASIC3.35□□□□□ -1.87
VMP1Q96GC9 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC3.35□□□□□ -1.87
VMP1Q96GC9 AL392048.1-201ENST00000613946 534 ntBASIC3.35□□□□□ -1.87
VMP1Q96GC9 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC3.35□□□□□ -1.87
VMP1Q96GC9 MIR6075-201ENST00000620782 95 ntBASIC3.35□□□□□ -1.87
VMP1Q96GC9 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC3.35□□□□□ -1.87
VMP1Q96GC9 AP003355.3-201ENST00000623465 114 ntBASIC3.35□□□□□ -1.87
VMP1Q96GC9 AC079228.1-201ENST00000624774 1049 ntBASIC3.35□□□□□ -1.87
VMP1Q96GC9 VPS8-228ENST00000628962 207 ntTSL 5 BASIC3.35□□□□□ -1.87
VMP1Q96GC9 AL732372.2-225ENST00000642124 456 ntBASIC3.35□□□□□ -1.87
VMP1Q96GC9 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC3.35□□□□□ -1.87
VMP1Q96GC9 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC3.34□□□□□ -1.87
VMP1Q96GC9 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
VMP1Q96GC9 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
VMP1Q96GC9 KIF27-203ENST00000376347 1030 ntTSL 5 BASIC3.34□□□□□ -1.87
VMP1Q96GC9 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC3.34□□□□□ -1.87
VMP1Q96GC9 RNA5SP492-201ENST00000411330 114 ntBASIC3.34□□□□□ -1.87
VMP1Q96GC9 AL389915.1-201ENST00000422463 466 ntBASIC3.34□□□□□ -1.87
VMP1Q96GC9 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC3.34□□□□□ -1.87
VMP1Q96GC9 AL161640.1-201ENST00000429507 390 ntTSL 2 BASIC3.34□□□□□ -1.87
VMP1Q96GC9 AC109583.1-201ENST00000432156 268 ntBASIC3.34□□□□□ -1.87
VMP1Q96GC9 HMGN2P31-201ENST00000432430 273 ntBASIC3.34□□□□□ -1.87
VMP1Q96GC9 AC009969.1-201ENST00000438726 172 ntBASIC3.34□□□□□ -1.87
VMP1Q96GC9 AL714022.1-201ENST00000439897 151 ntBASIC3.34□□□□□ -1.87
VMP1Q96GC9 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC3.34□□□□□ -1.87
VMP1Q96GC9 CBWD4P-201ENST00000445695 655 ntBASIC3.34□□□□□ -1.87
VMP1Q96GC9 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC3.34□□□□□ -1.87
VMP1Q96GC9 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC3.34□□□□□ -1.87
VMP1Q96GC9 ATG12P2-201ENST00000456830 416 ntBASIC3.34□□□□□ -1.87
VMP1Q96GC9 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC3.34□□□□□ -1.87
VMP1Q96GC9 AC116337.2-201ENST00000477662 156 ntBASIC3.34□□□□□ -1.87
VMP1Q96GC9 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC3.34□□□□□ -1.87
VMP1Q96GC9 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC3.34□□□□□ -1.87
VMP1Q96GC9 AP001025.2-201ENST00000490908 477 ntBASIC3.34□□□□□ -1.87
VMP1Q96GC9 AC093663.1-201ENST00000497190 394 ntBASIC3.34□□□□□ -1.87
VMP1Q96GC9 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
VMP1Q96GC9 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC3.34□□□□□ -1.87
VMP1Q96GC9 AC010587.2-201ENST00000511727 448 ntBASIC3.34□□□□□ -1.87
VMP1Q96GC9 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC3.34□□□□□ -1.87
VMP1Q96GC9 TBCA-206ENST00000518338 551 ntTSL 2 BASIC3.34□□□□□ -1.87
VMP1Q96GC9 AC087373.1-201ENST00000524920 491 ntBASIC3.34□□□□□ -1.87
VMP1Q96GC9 SETP2-201ENST00000553886 926 ntBASIC3.34□□□□□ -1.87
VMP1Q96GC9 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC3.34□□□□□ -1.87
VMP1Q96GC9 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC3.34□□□□□ -1.87
VMP1Q96GC9 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC3.34□□□□□ -1.87
VMP1Q96GC9 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC3.34□□□□□ -1.87
VMP1Q96GC9 AC006077.1-201ENST00000604746 343 ntBASIC3.34□□□□□ -1.87
VMP1Q96GC9 AL139022.2-201ENST00000606934 443 ntBASIC3.34□□□□□ -1.87
VMP1Q96GC9 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC3.34□□□□□ -1.87
VMP1Q96GC9 AC010608.3-201ENST00000625048 527 ntBASIC3.34□□□□□ -1.87
VMP1Q96GC9 TEX41-300ENST00000631048 69 ntTSL 5 BASIC3.34□□□□□ -1.87
VMP1Q96GC9 AL138713.1-201ENST00000624026 2130 ntBASIC3.34□□□□□ -1.88
VMP1Q96GC9 AC008669.1-201ENST00000565823 2178 ntBASIC3.34□□□□□ -1.88
VMP1Q96GC9 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.34□□□□□ -1.88
VMP1Q96GC9 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC3.33□□□□□ -1.88
VMP1Q96GC9 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC3.33□□□□□ -1.88
VMP1Q96GC9 RNU1-105P-201ENST00000363470 161 ntBASIC3.33□□□□□ -1.88
VMP1Q96GC9 RNA5SP42-201ENST00000364278 115 ntBASIC3.33□□□□□ -1.88
VMP1Q96GC9 U8.9-201ENST00000365667 134 ntBASIC3.33□□□□□ -1.88
VMP1Q96GC9 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC3.33□□□□□ -1.88
VMP1Q96GC9 MIR320C1-201ENST00000408566 88 ntBASIC3.33□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 163.9 ms