Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 MIR7974-201ENST00000615835 79 ntBASIC1.08□□□□□ -2.24
LINC00643Q86TS7 ZYXP1-201ENST00000617638 118 ntBASIC1.08□□□□□ -2.24
LINC00643Q86TS7 AC091304.6-201ENST00000619761 202 ntBASIC1.08□□□□□ -2.24
LINC00643Q86TS7 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC1.08□□□□□ -2.24
LINC00643Q86TS7 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC1.08□□□□□ -2.24
LINC00643Q86TS7 AL356473.1-201ENST00000406203 1408 ntBASIC1.07□□□□□ -2.24
LINC00643Q86TS7 TANK-206ENST00000406287 875 ntTSL 5 BASIC1.07□□□□□ -2.24
LINC00643Q86TS7 AC092745.2-202ENST00000411880 369 ntBASIC1.07□□□□□ -2.24
LINC00643Q86TS7 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC1.07□□□□□ -2.24
LINC00643Q86TS7 AC245028.1-201ENST00000423259 256 ntBASIC1.07□□□□□ -2.24
LINC00643Q86TS7 AC096920.1-201ENST00000423991 241 ntBASIC1.07□□□□□ -2.24
LINC00643Q86TS7 ARL5AP4-201ENST00000430731 512 ntBASIC1.07□□□□□ -2.24
LINC00643Q86TS7 HMGN2P31-201ENST00000432430 273 ntBASIC1.07□□□□□ -2.24
LINC00643Q86TS7 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC1.07□□□□□ -2.24
LINC00643Q86TS7 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC1.07□□□□□ -2.24
LINC00643Q86TS7 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC1.07□□□□□ -2.24
LINC00643Q86TS7 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC1.07□□□□□ -2.24
LINC00643Q86TS7 HMGN1P8-201ENST00000463578 288 ntBASIC1.07□□□□□ -2.24
LINC00643Q86TS7 AC117394.1-201ENST00000477323 567 ntBASIC1.07□□□□□ -2.24
LINC00643Q86TS7 ZSWIM7-209ENST00000486655 726 ntTSL 3 BASIC1.07□□□□□ -2.24
LINC00643Q86TS7 MTAPP1-201ENST00000489154 819 ntBASIC1.07□□□□□ -2.24
LINC00643Q86TS7 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC1.07□□□□□ -2.24
LINC00643Q86TS7 AC098862.1-201ENST00000504991 413 ntBASIC1.07□□□□□ -2.24
LINC00643Q86TS7 IGKV2D-36-201ENST00000518643 226 ntBASIC1.07□□□□□ -2.24
LINC00643Q86TS7 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC1.07□□□□□ -2.24
LINC00643Q86TS7 RANP3-201ENST00000530970 276 ntBASIC1.07□□□□□ -2.24
LINC00643Q86TS7 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC1.07□□□□□ -2.24
LINC00643Q86TS7 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC1.07□□□□□ -2.24
LINC00643Q86TS7 AC084824.1-201ENST00000550917 1005 ntBASIC1.07□□□□□ -2.24
LINC00643Q86TS7 SERPINE4P-201ENST00000554978 281 ntBASIC1.07□□□□□ -2.24
LINC00643Q86TS7 LINC00933-203ENST00000559812 219 ntBASIC1.07□□□□□ -2.24
LINC00643Q86TS7 AC008269.2-201ENST00000561915 1105 ntBASIC1.07□□□□□ -2.24
LINC00643Q86TS7 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC1.07□□□□□ -2.24
LINC00643Q86TS7 AC005498.1-201ENST00000592125 465 ntBASIC1.07□□□□□ -2.24
LINC00643Q86TS7 AC243960.4-201ENST00000600532 288 ntBASIC1.07□□□□□ -2.24
LINC00643Q86TS7 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC1.07□□□□□ -2.24
LINC00643Q86TS7 AC244472.1-201ENST00000620773 347 ntAPPRIS P1 BASIC1.07□□□□□ -2.24
LINC00643Q86TS7 CDC27P3-201ENST00000635418 1910 ntBASIC1.07□□□□□ -2.24
LINC00643Q86TS7 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC1.06□□□□□ -2.24
LINC00643Q86TS7 RNU1-62P-201ENST00000362599 164 ntBASIC1.06□□□□□ -2.24
LINC00643Q86TS7 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC1.06□□□□□ -2.24
LINC00643Q86TS7 MIR1178-201ENST00000408396 91 ntBASIC1.06□□□□□ -2.24
LINC00643Q86TS7 SNORA11.4-201ENST00000408823 129 ntBASIC1.06□□□□□ -2.24
LINC00643Q86TS7 RNU2-20P-201ENST00000410425 191 ntBASIC1.06□□□□□ -2.24
LINC00643Q86TS7 RN7SKP278-201ENST00000410504 342 ntBASIC1.06□□□□□ -2.24
LINC00643Q86TS7 AL139156.1-201ENST00000412785 841 ntBASIC1.06□□□□□ -2.24
LINC00643Q86TS7 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC1.06□□□□□ -2.24
LINC00643Q86TS7 AL009174.1-201ENST00000426577 416 ntBASIC1.06□□□□□ -2.24
LINC00643Q86TS7 SDAD1P3-201ENST00000427380 333 ntBASIC1.06□□□□□ -2.24
LINC00643Q86TS7 ARL4AP4-201ENST00000434170 518 ntBASIC1.06□□□□□ -2.24
LINC00643Q86TS7 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC1.06□□□□□ -2.24
LINC00643Q86TS7 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC1.06□□□□□ -2.24
LINC00643Q86TS7 OR10R1P-201ENST00000441524 1141 ntBASIC1.06□□□□□ -2.24
LINC00643Q86TS7 AC118469.1-201ENST00000442943 488 ntBASIC1.06□□□□□ -2.24
LINC00643Q86TS7 AL135938.1-201ENST00000443141 297 ntBASIC1.06□□□□□ -2.24
LINC00643Q86TS7 MTCYBP3-201ENST00000445588 1137 ntBASIC1.06□□□□□ -2.24
LINC00643Q86TS7 AC005002.1-201ENST00000447458 540 ntBASIC1.06□□□□□ -2.24
LINC00643Q86TS7 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC1.06□□□□□ -2.24
LINC00643Q86TS7 AC104978.1-201ENST00000449387 391 ntBASIC1.06□□□□□ -2.24
LINC00643Q86TS7 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC1.06□□□□□ -2.24
LINC00643Q86TS7 RPL21P134-201ENST00000453468 483 ntBASIC1.06□□□□□ -2.24
LINC00643Q86TS7 Z82190.1-201ENST00000454534 490 ntBASIC1.06□□□□□ -2.24
LINC00643Q86TS7 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC1.06□□□□□ -2.24
LINC00643Q86TS7 AC005410.1-202ENST00000460347 485 ntBASIC1.06□□□□□ -2.24
LINC00643Q86TS7 AC025181.1-201ENST00000477507 416 ntBASIC1.06□□□□□ -2.24
LINC00643Q86TS7 AC107032.1-201ENST00000485945 480 ntBASIC1.06□□□□□ -2.24
LINC00643Q86TS7 AC112518.2-201ENST00000508565 425 ntBASIC1.06□□□□□ -2.24
LINC00643Q86TS7 AC008780.2-201ENST00000509844 820 ntTSL 2 BASIC1.06□□□□□ -2.24
LINC00643Q86TS7 TPT1P8-201ENST00000510120 555 ntBASIC1.06□□□□□ -2.24
LINC00643Q86TS7 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC1.06□□□□□ -2.24
LINC00643Q86TS7 MS4A3-208ENST00000534744 507 ntTSL 1 (best) BASIC1.06□□□□□ -2.24
LINC00643Q86TS7 AL035071.2-201ENST00000565572 459 ntTSL 3 BASIC1.06□□□□□ -2.24
LINC00643Q86TS7 AC104581.2-201ENST00000572227 430 ntBASIC1.06□□□□□ -2.24
LINC00643Q86TS7 THRA1/BTR-203ENST00000604191 571 ntTSL 4 BASIC1.06□□□□□ -2.24
LINC00643Q86TS7 SDR42E1P1-201ENST00000611327 477 ntBASIC1.06□□□□□ -2.24
LINC00643Q86TS7 AC097372.4-201ENST00000625025 466 ntBASIC1.06□□□□□ -2.24
LINC00643Q86TS7 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC1.06□□□□□ -2.24
LINC00643Q86TS7 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC1.06□□□□□ -2.24
LINC00643Q86TS7 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC1.06□□□□□ -2.24
LINC00643Q86TS7 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC1.05□□□□□ -2.24
LINC00643Q86TS7 ZBTB8OSP1-201ENST00000342688 498 ntBASIC1.05□□□□□ -2.24
LINC00643Q86TS7 RNA5SP258-201ENST00000362750 119 ntBASIC1.05□□□□□ -2.24
LINC00643Q86TS7 RNU1-42P-201ENST00000364033 160 ntBASIC1.05□□□□□ -2.24
LINC00643Q86TS7 AL033519.2-201ENST00000403958 392 ntBASIC1.05□□□□□ -2.24
LINC00643Q86TS7 AC099535.1-201ENST00000408928 371 ntBASIC1.05□□□□□ -2.24
LINC00643Q86TS7 RNA5SP450-201ENST00000411206 102 ntBASIC1.05□□□□□ -2.24
LINC00643Q86TS7 AL445183.3-201ENST00000414168 502 ntBASIC1.05□□□□□ -2.24
LINC00643Q86TS7 AC007098.1-201ENST00000420122 367 ntBASIC1.05□□□□□ -2.24
LINC00643Q86TS7 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC1.05□□□□□ -2.24
LINC00643Q86TS7 AL160272.1-201ENST00000421509 521 ntTSL 3 BASIC1.05□□□□□ -2.24
LINC00643Q86TS7 DPYD-AS2-201ENST00000422259 788 ntTSL 3 BASIC1.05□□□□□ -2.24
LINC00643Q86TS7 SLC16A12-AS1-201ENST00000423474 405 ntTSL 3 BASIC1.05□□□□□ -2.24
LINC00643Q86TS7 AC019097.1-201ENST00000424783 735 ntBASIC1.05□□□□□ -2.24
LINC00643Q86TS7 RPL35AP12-201ENST00000425362 338 ntBASIC1.05□□□□□ -2.24
LINC00643Q86TS7 MTCO1P39-201ENST00000426148 480 ntBASIC1.05□□□□□ -2.24
LINC00643Q86TS7 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC1.05□□□□□ -2.24
LINC00643Q86TS7 AL591503.2-201ENST00000442314 1005 ntBASIC1.05□□□□□ -2.24
LINC00643Q86TS7 USP9YP15-201ENST00000442391 422 ntBASIC1.05□□□□□ -2.24
LINC00643Q86TS7 HSPE1P24-201ENST00000450782 238 ntBASIC1.05□□□□□ -2.24
LINC00643Q86TS7 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC1.05□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 153.3 ms