Protein–RNA interactions for Protein: Q70EL4

USP43, Ubiquitin carboxyl-terminal hydrolase 43, humanhuman

Predictions only

Length 1,123 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP43Q70EL4 AL591034.3-201ENST00000605511 685 ntBASIC3.6□□□□□ -1.83
USP43Q70EL4 AC116312.1-201ENST00000606841 314 ntBASIC3.6□□□□□ -1.83
USP43Q70EL4 AL355816.1-201ENST00000607951 118 ntBASIC3.6□□□□□ -1.83
USP43Q70EL4 AC018926.3-201ENST00000618841 406 ntBASIC3.6□□□□□ -1.83
USP43Q70EL4 Xist_exon1.1-201ENST00000618930 85 ntBASIC3.6□□□□□ -1.83
USP43Q70EL4 AL158209.2-201ENST00000619266 216 ntBASIC3.6□□□□□ -1.83
USP43Q70EL4 YWHAEP7-203ENST00000622054 312 ntBASIC3.6□□□□□ -1.83
USP43Q70EL4 AC090574.1-201ENST00000623186 233 ntBASIC3.6□□□□□ -1.83
USP43Q70EL4 AC079228.1-201ENST00000624774 1049 ntBASIC3.6□□□□□ -1.83
USP43Q70EL4 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC3.6□□□□□ -1.83
USP43Q70EL4 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC3.6□□□□□ -1.83
USP43Q70EL4 MTND4P27-201ENST00000450813 1354 ntBASIC3.6□□□□□ -1.83
USP43Q70EL4 ZNF37BP-203ENST00000452306 1352 ntBASIC3.6□□□□□ -1.83
USP43Q70EL4 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
USP43Q70EL4 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.83
USP43Q70EL4 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.59□□□□□ -1.83
USP43Q70EL4 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.83
USP43Q70EL4 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.59□□□□□ -1.83
USP43Q70EL4 DBF4P1-201ENST00000412976 1892 ntBASIC3.59□□□□□ -1.83
USP43Q70EL4 RNU1-132P-201ENST00000364300 164 ntBASIC3.59□□□□□ -1.83
USP43Q70EL4 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
USP43Q70EL4 Y_RNA.548-201ENST00000384656 105 ntBASIC3.59□□□□□ -1.83
USP43Q70EL4 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
USP43Q70EL4 RPL32P23-201ENST00000397237 405 ntBASIC3.59□□□□□ -1.83
USP43Q70EL4 MTCYBP36-201ENST00000404146 440 ntBASIC3.59□□□□□ -1.83
USP43Q70EL4 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC3.59□□□□□ -1.83
USP43Q70EL4 BOLA3P4-201ENST00000418151 400 ntBASIC3.59□□□□□ -1.83
USP43Q70EL4 AIMP1P1-201ENST00000418670 937 ntBASIC3.59□□□□□ -1.83
USP43Q70EL4 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC3.59□□□□□ -1.83
USP43Q70EL4 B3GALNT1P1-201ENST00000420569 975 ntBASIC3.59□□□□□ -1.83
USP43Q70EL4 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC3.59□□□□□ -1.83
USP43Q70EL4 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
USP43Q70EL4 AC002075.2-201ENST00000425207 252 ntBASIC3.59□□□□□ -1.83
USP43Q70EL4 RPS24P8-201ENST00000431490 402 ntBASIC3.59□□□□□ -1.83
USP43Q70EL4 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC3.59□□□□□ -1.83
USP43Q70EL4 OR4C10P-201ENST00000434991 931 ntBASIC3.59□□□□□ -1.83
USP43Q70EL4 RPS7P5-201ENST00000441482 581 ntBASIC3.59□□□□□ -1.83
USP43Q70EL4 AC093019.1-201ENST00000443135 252 ntBASIC3.59□□□□□ -1.83
USP43Q70EL4 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC3.59□□□□□ -1.83
USP43Q70EL4 RPL7P59-201ENST00000447700 943 ntBASIC3.59□□□□□ -1.83
USP43Q70EL4 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC3.59□□□□□ -1.83
USP43Q70EL4 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC3.59□□□□□ -1.83
USP43Q70EL4 AL049548.1-201ENST00000458194 385 ntTSL 2 BASIC3.59□□□□□ -1.83
USP43Q70EL4 LARP1BP2-201ENST00000486594 519 ntBASIC3.59□□□□□ -1.83
USP43Q70EL4 RN7SL604P-201ENST00000492589 296 ntBASIC3.59□□□□□ -1.83
USP43Q70EL4 AC018710.1-201ENST00000506509 158 ntBASIC3.59□□□□□ -1.83
USP43Q70EL4 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC3.59□□□□□ -1.83
USP43Q70EL4 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC3.59□□□□□ -1.83
USP43Q70EL4 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC3.59□□□□□ -1.83
USP43Q70EL4 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC3.59□□□□□ -1.83
USP43Q70EL4 Y_RNA.675-201ENST00000516389 149 ntBASIC3.59□□□□□ -1.83
USP43Q70EL4 AC239860.2-201ENST00000525886 270 ntBASIC3.59□□□□□ -1.83
USP43Q70EL4 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
USP43Q70EL4 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC3.59□□□□□ -1.83
USP43Q70EL4 SLC2A13P1-201ENST00000531560 322 ntBASIC3.59□□□□□ -1.83
USP43Q70EL4 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC3.59□□□□□ -1.83
USP43Q70EL4 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC3.59□□□□□ -1.83
USP43Q70EL4 ARL2BPP2-201ENST00000550907 489 ntBASIC3.59□□□□□ -1.83
USP43Q70EL4 AL121576.1-201ENST00000556055 276 ntBASIC3.59□□□□□ -1.83
USP43Q70EL4 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC3.59□□□□□ -1.83
USP43Q70EL4 MIR3913-1-201ENST00000577744 102 ntBASIC3.59□□□□□ -1.83
USP43Q70EL4 AC090312.2-201ENST00000582687 378 ntBASIC3.59□□□□□ -1.83
USP43Q70EL4 NF1P5-201ENST00000588287 448 ntBASIC3.59□□□□□ -1.83
USP43Q70EL4 AL009028.1-201ENST00000604895 802 ntBASIC3.59□□□□□ -1.83
USP43Q70EL4 BRDTP1-201ENST00000605735 677 ntBASIC3.59□□□□□ -1.83
USP43Q70EL4 AC243756.2-201ENST00000618406 463 ntBASIC3.59□□□□□ -1.83
USP43Q70EL4 AL445264.1-201ENST00000621719 171 ntBASIC3.59□□□□□ -1.83
USP43Q70EL4 AL359880.1-201ENST00000621879 266 ntBASIC3.59□□□□□ -1.83
USP43Q70EL4 AC091905.1-201ENST00000624400 311 ntBASIC3.59□□□□□ -1.83
USP43Q70EL4 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
USP43Q70EL4 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
USP43Q70EL4 CCT4P2-201ENST00000233836 1548 ntBASIC3.59□□□□□ -1.84
USP43Q70EL4 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC3.59□□□□□ -1.84
USP43Q70EL4 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.84
USP43Q70EL4 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
USP43Q70EL4 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.58□□□□□ -1.84
USP43Q70EL4 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC3.58□□□□□ -1.84
USP43Q70EL4 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC3.58□□□□□ -1.84
USP43Q70EL4 RNU6-492P-201ENST00000363035 104 ntBASIC3.58□□□□□ -1.84
USP43Q70EL4 Y_RNA.97-201ENST00000363094 102 ntBASIC3.58□□□□□ -1.84
USP43Q70EL4 RNU6-216P-201ENST00000363282 104 ntBASIC3.58□□□□□ -1.84
USP43Q70EL4 Y_RNA.132-201ENST00000363421 102 ntBASIC3.58□□□□□ -1.84
USP43Q70EL4 Y_RNA.138-201ENST00000363462 102 ntBASIC3.58□□□□□ -1.84
USP43Q70EL4 RNU5F-7P-201ENST00000363696 115 ntBASIC3.58□□□□□ -1.84
USP43Q70EL4 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
USP43Q70EL4 RNU6-723P-201ENST00000383973 107 ntBASIC3.58□□□□□ -1.84
USP43Q70EL4 RNU6-738P-201ENST00000384531 106 ntBASIC3.58□□□□□ -1.84
USP43Q70EL4 MTCO3P40-201ENST00000392516 676 ntBASIC3.58□□□□□ -1.84
USP43Q70EL4 EI24P2-201ENST00000397776 1076 ntBASIC3.58□□□□□ -1.84
USP43Q70EL4 TMSB4XP8-201ENST00000402089 135 ntBASIC3.58□□□□□ -1.84
USP43Q70EL4 AL356776.1-201ENST00000406574 447 ntBASIC3.58□□□□□ -1.84
USP43Q70EL4 AL450338.1-201ENST00000407987 512 ntBASIC3.58□□□□□ -1.84
USP43Q70EL4 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC3.58□□□□□ -1.84
USP43Q70EL4 HMGB3P23-201ENST00000414981 585 ntBASIC3.58□□□□□ -1.84
USP43Q70EL4 TMSB4XP6-201ENST00000415187 135 ntBASIC3.58□□□□□ -1.84
USP43Q70EL4 AC069157.1-201ENST00000421749 137 ntBASIC3.58□□□□□ -1.84
USP43Q70EL4 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC3.58□□□□□ -1.84
USP43Q70EL4 TMSB4XP1-201ENST00000424567 135 ntBASIC3.58□□□□□ -1.84
USP43Q70EL4 COX6CP15-201ENST00000426313 211 ntBASIC3.58□□□□□ -1.84
USP43Q70EL4 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC3.58□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 130.7 ms