Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AC006011.1-201ENST00000442758 349 ntBASIC3.26□□□□□ -1.89
PDLIM3Q53GG5 TAF9P1-201ENST00000445421 515 ntBASIC3.26□□□□□ -1.89
PDLIM3Q53GG5 TAF9P2-201ENST00000454958 515 ntBASIC3.26□□□□□ -1.89
PDLIM3Q53GG5 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC3.26□□□□□ -1.89
PDLIM3Q53GG5 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC3.26□□□□□ -1.89
PDLIM3Q53GG5 AC034222.1-201ENST00000494052 532 ntBASIC3.26□□□□□ -1.89
PDLIM3Q53GG5 RPL29P14-201ENST00000495837 428 ntBASIC3.26□□□□□ -1.89
PDLIM3Q53GG5 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC3.26□□□□□ -1.89
PDLIM3Q53GG5 AC099522.1-202ENST00000514718 367 ntBASIC3.26□□□□□ -1.89
PDLIM3Q53GG5 AP002748.2-201ENST00000528671 348 ntBASIC3.26□□□□□ -1.89
PDLIM3Q53GG5 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC3.26□□□□□ -1.89
PDLIM3Q53GG5 AC087481.2-201ENST00000565492 330 ntBASIC3.26□□□□□ -1.89
PDLIM3Q53GG5 LINC2194-202ENST00000567624 506 ntTSL 3 BASIC3.26□□□□□ -1.89
PDLIM3Q53GG5 AC012414.6-201ENST00000568241 401 ntBASIC3.26□□□□□ -1.89
PDLIM3Q53GG5 AC060771.1-201ENST00000582031 164 ntBASIC3.26□□□□□ -1.89
PDLIM3Q53GG5 AL353997.4-201ENST00000586196 166 ntBASIC3.26□□□□□ -1.89
PDLIM3Q53GG5 AC104984.5-201ENST00000586878 94 ntBASIC3.26□□□□□ -1.89
PDLIM3Q53GG5 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC3.26□□□□□ -1.89
PDLIM3Q53GG5 AP000403.1-201ENST00000603349 851 ntBASIC3.26□□□□□ -1.89
PDLIM3Q53GG5 RN7SKP299-201ENST00000606679 301 ntBASIC3.26□□□□□ -1.89
PDLIM3Q53GG5 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC3.26□□□□□ -1.89
PDLIM3Q53GG5 AC092354.2-201ENST00000607786 514 ntBASIC3.26□□□□□ -1.89
PDLIM3Q53GG5 AC009090.3-201ENST00000616553 565 ntBASIC3.26□□□□□ -1.89
PDLIM3Q53GG5 MIR7151-201ENST00000617477 60 ntBASIC3.26□□□□□ -1.89
PDLIM3Q53GG5 AC112204.3-201ENST00000623822 332 ntBASIC3.26□□□□□ -1.89
PDLIM3Q53GG5 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC3.26□□□□□ -1.89
PDLIM3Q53GG5 AC025048.6-202ENST00000627667 438 ntBASIC3.26□□□□□ -1.89
PDLIM3Q53GG5 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC3.26□□□□□ -1.89
PDLIM3Q53GG5 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
PDLIM3Q53GG5 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC3.26□□□□□ -1.89
PDLIM3Q53GG5 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC3.26□□□□□ -1.89
PDLIM3Q53GG5 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.26□□□□□ -1.89
PDLIM3Q53GG5 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.26□□□□□ -1.89
PDLIM3Q53GG5 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.26□□□□□ -1.89
PDLIM3Q53GG5 MTCO1P12-201ENST00000414273 1543 ntBASIC3.25□□□□□ -1.89
PDLIM3Q53GG5 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
PDLIM3Q53GG5 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
PDLIM3Q53GG5 AC116667.1-201ENST00000604855 2072 ntBASIC3.25□□□□□ -1.89
PDLIM3Q53GG5 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
PDLIM3Q53GG5 APOH-201ENST00000205948 1176 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
PDLIM3Q53GG5 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
PDLIM3Q53GG5 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
PDLIM3Q53GG5 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
PDLIM3Q53GG5 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC3.25□□□□□ -1.89
PDLIM3Q53GG5 RNU6-1074P-201ENST00000383995 104 ntBASIC3.25□□□□□ -1.89
PDLIM3Q53GG5 SNORD3H-201ENST00000384486 214 ntBASIC3.25□□□□□ -1.89
PDLIM3Q53GG5 MIR183-201ENST00000384958 110 ntBASIC3.25□□□□□ -1.89
PDLIM3Q53GG5 HMGN2P8-201ENST00000391458 268 ntBASIC3.25□□□□□ -1.89
PDLIM3Q53GG5 SNORA57.3-201ENST00000411095 141 ntBASIC3.25□□□□□ -1.89
PDLIM3Q53GG5 AL359704.1-201ENST00000411586 781 ntBASIC3.25□□□□□ -1.89
PDLIM3Q53GG5 BTF3L4P1-201ENST00000413813 468 ntBASIC3.25□□□□□ -1.89
PDLIM3Q53GG5 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC3.25□□□□□ -1.89
PDLIM3Q53GG5 COX6B1P7-201ENST00000430845 235 ntBASIC3.25□□□□□ -1.89
PDLIM3Q53GG5 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC3.25□□□□□ -1.89
PDLIM3Q53GG5 AL358472.1-201ENST00000431295 329 ntBASIC3.25□□□□□ -1.89
PDLIM3Q53GG5 HMGN2P31-201ENST00000432430 273 ntBASIC3.25□□□□□ -1.89
PDLIM3Q53GG5 AC112653.1-201ENST00000443851 386 ntBASIC3.25□□□□□ -1.89
PDLIM3Q53GG5 AC234775.1-201ENST00000454247 670 ntBASIC3.25□□□□□ -1.89
PDLIM3Q53GG5 DNAJC19P1-201ENST00000455312 319 ntBASIC3.25□□□□□ -1.89
PDLIM3Q53GG5 snoU109.4-201ENST00000458953 143 ntBASIC3.25□□□□□ -1.89
PDLIM3Q53GG5 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC3.25□□□□□ -1.89
PDLIM3Q53GG5 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
PDLIM3Q53GG5 RN7SL429P-201ENST00000479090 223 ntBASIC3.25□□□□□ -1.89
PDLIM3Q53GG5 AC021382.1-201ENST00000483523 359 ntBASIC3.25□□□□□ -1.89
PDLIM3Q53GG5 RN7SL489P-201ENST00000486185 223 ntBASIC3.25□□□□□ -1.89
PDLIM3Q53GG5 RN7SL327P-201ENST00000488659 223 ntBASIC3.25□□□□□ -1.89
PDLIM3Q53GG5 ADGRL3-AS1-203ENST00000506704 606 ntTSL 5 BASIC3.25□□□□□ -1.89
PDLIM3Q53GG5 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
PDLIM3Q53GG5 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
PDLIM3Q53GG5 AC007115.1-201ENST00000546853 234 ntBASIC3.25□□□□□ -1.89
PDLIM3Q53GG5 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC3.25□□□□□ -1.89
PDLIM3Q53GG5 SETP7-201ENST00000552169 453 ntBASIC3.25□□□□□ -1.89
PDLIM3Q53GG5 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC3.25□□□□□ -1.89
PDLIM3Q53GG5 AC022655.2-201ENST00000577280 318 ntBASIC3.25□□□□□ -1.89
PDLIM3Q53GG5 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC3.25□□□□□ -1.89
PDLIM3Q53GG5 MIR5684-201ENST00000585074 65 ntBASIC3.25□□□□□ -1.89
PDLIM3Q53GG5 NBR2-204ENST00000587322 63 ntBASIC3.25□□□□□ -1.89
PDLIM3Q53GG5 AC083760.1-201ENST00000589621 670 ntBASIC3.25□□□□□ -1.89
PDLIM3Q53GG5 AL031985.2-201ENST00000600955 480 ntBASIC3.25□□□□□ -1.89
PDLIM3Q53GG5 AC073544.2-201ENST00000601155 540 ntBASIC3.25□□□□□ -1.89
PDLIM3Q53GG5 AC012065.4-201ENST00000602445 679 ntBASIC3.25□□□□□ -1.89
PDLIM3Q53GG5 AL161729.3-201ENST00000603533 673 ntBASIC3.25□□□□□ -1.89
PDLIM3Q53GG5 AC011451.2-201ENST00000604303 598 ntBASIC3.25□□□□□ -1.89
PDLIM3Q53GG5 AC068276.1-201ENST00000605793 379 ntBASIC3.25□□□□□ -1.89
PDLIM3Q53GG5 RN7SL853P-201ENST00000617250 223 ntBASIC3.25□□□□□ -1.89
PDLIM3Q53GG5 AL590240.3-201ENST00000621416 943 ntBASIC3.25□□□□□ -1.89
PDLIM3Q53GG5 AL356585.4-201ENST00000623078 1229 ntBASIC3.25□□□□□ -1.89
PDLIM3Q53GG5 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC3.25□□□□□ -1.89
PDLIM3Q53GG5 AC244205.2-202ENST00000635781 342 ntBASIC3.25□□□□□ -1.89
PDLIM3Q53GG5 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.25□□□□□ -1.89
PDLIM3Q53GG5 ZNF285B-201ENST00000561698 1767 ntBASIC3.25□□□□□ -1.89
PDLIM3Q53GG5 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.25□□□□□ -1.89
PDLIM3Q53GG5 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC3.25□□□□□ -1.89
PDLIM3Q53GG5 CCT4P2-201ENST00000233836 1548 ntBASIC3.24□□□□□ -1.89
PDLIM3Q53GG5 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC3.24□□□□□ -1.89
PDLIM3Q53GG5 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC3.24□□□□□ -1.89
PDLIM3Q53GG5 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
PDLIM3Q53GG5 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC3.24□□□□□ -1.89
PDLIM3Q53GG5 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC3.24□□□□□ -1.89
PDLIM3Q53GG5 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC3.24□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 10.1 ms