Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.58□□□□□ -2.16
CHD9Q3L8U1 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC1.58□□□□□ -2.16
CHD9Q3L8U1 Clostridiales-1.2-201ENST00000636724 160 ntBASIC1.58□□□□□ -2.16
CHD9Q3L8U1 CDC27P3-201ENST00000635418 1910 ntBASIC1.58□□□□□ -2.16
CHD9Q3L8U1 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC1.57□□□□□ -2.16
CHD9Q3L8U1 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC1.57□□□□□ -2.16
CHD9Q3L8U1 RPS27AP18-201ENST00000515536 459 ntBASIC1.57□□□□□ -2.16
CHD9Q3L8U1 RNU6-1223P-201ENST00000517124 104 ntBASIC1.57□□□□□ -2.16
CHD9Q3L8U1 AC007375.1-201ENST00000554513 578 ntBASIC1.57□□□□□ -2.16
CHD9Q3L8U1 AL121852.1-201ENST00000554665 430 ntTSL 3 BASIC1.57□□□□□ -2.16
CHD9Q3L8U1 AL137100.2-201ENST00000555786 315 ntBASIC1.57□□□□□ -2.16
CHD9Q3L8U1 CD24P2-201ENST00000565486 219 ntBASIC1.57□□□□□ -2.16
CHD9Q3L8U1 AC091895.1-201ENST00000624494 256 ntBASIC1.57□□□□□ -2.16
CHD9Q3L8U1 AC008568.2-201ENST00000623862 2313 ntBASIC1.57□□□□□ -2.16
CHD9Q3L8U1 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC1.57□□□□□ -2.16
CHD9Q3L8U1 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
CHD9Q3L8U1 MIR520E-201ENST00000384867 87 ntBASIC1.57□□□□□ -2.16
CHD9Q3L8U1 SNORA31.24-201ENST00000517232 57 ntBASIC1.57□□□□□ -2.16
CHD9Q3L8U1 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC1.57□□□□□ -2.16
CHD9Q3L8U1 Y_RNA.36-201ENST00000362602 112 ntBASIC1.57□□□□□ -2.16
CHD9Q3L8U1 CD3D-202ENST00000392884 476 ntTSL 2 BASIC1.57□□□□□ -2.16
CHD9Q3L8U1 USP9YP27-201ENST00000418455 438 ntBASIC1.57□□□□□ -2.16
CHD9Q3L8U1 RPS6P15-201ENST00000431996 751 ntBASIC1.57□□□□□ -2.16
CHD9Q3L8U1 MTND1P18-201ENST00000448191 573 ntBASIC1.57□□□□□ -2.16
CHD9Q3L8U1 snoU109.4-201ENST00000458953 143 ntBASIC1.57□□□□□ -2.16
CHD9Q3L8U1 AC006148.2-201ENST00000467017 650 ntTSL 2 BASIC1.57□□□□□ -2.16
CHD9Q3L8U1 AC004223.1-201ENST00000479840 271 ntBASIC1.57□□□□□ -2.16
CHD9Q3L8U1 MIR4506-201ENST00000584693 77 ntBASIC1.57□□□□□ -2.16
CHD9Q3L8U1 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC1.57□□□□□ -2.16
CHD9Q3L8U1 AL121917.1-203ENST00000605534 577 ntBASIC1.57□□□□□ -2.16
CHD9Q3L8U1 OR5T1-202ENST00000641665 1471 ntAPPRIS P1 BASIC1.56□□□□□ -2.16
CHD9Q3L8U1 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC1.56□□□□□ -2.16
CHD9Q3L8U1 STX19-201ENST00000315099 1158 ntAPPRIS P1 TSL 1 (best) BASIC1.56□□□□□ -2.16
CHD9Q3L8U1 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.56□□□□□ -2.16
CHD9Q3L8U1 AC027673.1-201ENST00000456245 405 ntBASIC1.56□□□□□ -2.16
CHD9Q3L8U1 MTND3P6-201ENST00000485242 339 ntBASIC1.56□□□□□ -2.16
CHD9Q3L8U1 AC078918.1-201ENST00000498515 228 ntBASIC1.56□□□□□ -2.16
CHD9Q3L8U1 MTCYBP18-201ENST00000501056 747 ntBASIC1.56□□□□□ -2.16
CHD9Q3L8U1 SATB1-AS1-222ENST00000600177 751 ntTSL 5 BASIC1.56□□□□□ -2.16
CHD9Q3L8U1 AC008121.3-201ENST00000618726 433 ntBASIC1.56□□□□□ -2.16
CHD9Q3L8U1 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC1.56□□□□□ -2.16
CHD9Q3L8U1 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
CHD9Q3L8U1 MIRLET7G-201ENST00000362280 84 ntBASIC1.56□□□□□ -2.16
CHD9Q3L8U1 SNORD114-27-201ENST00000363766 70 ntBASIC1.56□□□□□ -2.16
CHD9Q3L8U1 AC019155.1-201ENST00000382242 574 ntBASIC1.56□□□□□ -2.16
CHD9Q3L8U1 RGS5-217ENST00000451759 835 ntTSL 3 BASIC1.56□□□□□ -2.16
CHD9Q3L8U1 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC1.56□□□□□ -2.16
CHD9Q3L8U1 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC1.56□□□□□ -2.16
CHD9Q3L8U1 CA1-215ENST00000522389 551 ntTSL 3 BASIC1.56□□□□□ -2.16
CHD9Q3L8U1 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC1.56□□□□□ -2.16
CHD9Q3L8U1 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC1.56□□□□□ -2.16
CHD9Q3L8U1 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC1.56□□□□□ -2.16
CHD9Q3L8U1 CSTA-201ENST00000264474 751 ntAPPRIS P1 TSL 1 (best) BASIC1.55□□□□□ -2.16
CHD9Q3L8U1 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC1.55□□□□□ -2.16
CHD9Q3L8U1 SNORA67.6-201ENST00000391093 99 ntBASIC1.55□□□□□ -2.16
CHD9Q3L8U1 MTCYBP45-201ENST00000435243 565 ntBASIC1.55□□□□□ -2.16
CHD9Q3L8U1 HMGB1P26-201ENST00000452520 628 ntBASIC1.55□□□□□ -2.16
CHD9Q3L8U1 RPS3AP22-201ENST00000488297 769 ntBASIC1.55□□□□□ -2.16
CHD9Q3L8U1 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC1.55□□□□□ -2.16
CHD9Q3L8U1 PIH1D2-208ENST00000532211 1103 ntAPPRIS P1 TSL 5 BASIC1.55□□□□□ -2.16
CHD9Q3L8U1 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.55□□□□□ -2.16
CHD9Q3L8U1 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC1.55□□□□□ -2.16
CHD9Q3L8U1 RNU6-984P-201ENST00000363236 109 ntBASIC1.55□□□□□ -2.16
CHD9Q3L8U1 AC092155.2-201ENST00000454675 477 ntBASIC1.55□□□□□ -2.16
CHD9Q3L8U1 RNA5SP61-201ENST00000516453 100 ntBASIC1.55□□□□□ -2.16
CHD9Q3L8U1 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC1.55□□□□□ -2.16
CHD9Q3L8U1 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC1.55□□□□□ -2.16
CHD9Q3L8U1 NF1-214ENST00000490416 1329 ntTSL 3 BASIC1.54□□□□□ -2.16
CHD9Q3L8U1 RPL23AP29-201ENST00000397284 453 ntBASIC1.54□□□□□ -2.16
CHD9Q3L8U1 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.54□□□□□ -2.16
CHD9Q3L8U1 AL445669.1-201ENST00000426743 755 ntBASIC1.54□□□□□ -2.16
CHD9Q3L8U1 AC114973.1-201ENST00000429057 632 ntBASIC1.54□□□□□ -2.16
CHD9Q3L8U1 AL357520.1-201ENST00000441557 453 ntBASIC1.54□□□□□ -2.16
CHD9Q3L8U1 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC1.54□□□□□ -2.16
CHD9Q3L8U1 AC090819.1-201ENST00000523800 1111 ntBASIC1.54□□□□□ -2.16
CHD9Q3L8U1 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC1.54□□□□□ -2.16
CHD9Q3L8U1 MIR151B-201ENST00000584249 96 ntBASIC1.54□□□□□ -2.16
CHD9Q3L8U1 BNIP3P4-201ENST00000604946 565 ntBASIC1.54□□□□□ -2.16
CHD9Q3L8U1 STMN1P1-201ENST00000617809 440 ntBASIC1.54□□□□□ -2.16
CHD9Q3L8U1 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC1.54□□□□□ -2.16
CHD9Q3L8U1 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC1.54□□□□□ -2.16
CHD9Q3L8U1 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC1.54□□□□□ -2.16
CHD9Q3L8U1 AC239798.3-201ENST00000454459 408 ntBASIC1.54□□□□□ -2.16
CHD9Q3L8U1 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC1.54□□□□□ -2.16
CHD9Q3L8U1 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC1.54□□□□□ -2.16
CHD9Q3L8U1 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC1.54□□□□□ -2.16
CHD9Q3L8U1 SRIP3-201ENST00000413200 219 ntBASIC1.53□□□□□ -2.16
CHD9Q3L8U1 AC093767.1-201ENST00000504523 156 ntBASIC1.53□□□□□ -2.16
CHD9Q3L8U1 AC090071.1-201ENST00000507713 644 ntBASIC1.53□□□□□ -2.16
CHD9Q3L8U1 TRAV28-201ENST00000557548 323 ntBASIC1.53□□□□□ -2.16
CHD9Q3L8U1 OR4K8P-201ENST00000578842 1048 ntBASIC1.53□□□□□ -2.16
CHD9Q3L8U1 AL118496.1-201ENST00000440201 1812 ntBASIC1.53□□□□□ -2.16
CHD9Q3L8U1 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC1.53□□□□□ -2.16
CHD9Q3L8U1 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC1.53□□□□□ -2.16
CHD9Q3L8U1 RNU6-826P-201ENST00000516827 104 ntBASIC1.53□□□□□ -2.16
CHD9Q3L8U1 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC1.53□□□□□ -2.16
CHD9Q3L8U1 AC066616.2-201ENST00000559334 1481 ntBASIC1.53□□□□□ -2.16
CHD9Q3L8U1 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC1.53□□□□□ -2.16
CHD9Q3L8U1 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC1.53□□□□□ -2.17
CHD9Q3L8U1 AC092326.2-201ENST00000624772 1561 ntBASIC1.53□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 82.3 ms