Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AC010273.1-201ENST00000504129 946 ntTSL 5 BASIC1.93□□□□□ -2.1
HLA-DMBP28068 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC1.93□□□□□ -2.1
HLA-DMBP28068 RNU6-27P-201ENST00000516146 107 ntBASIC1.93□□□□□ -2.1
HLA-DMBP28068 RNA5SP282-201ENST00000516355 108 ntBASIC1.93□□□□□ -2.1
HLA-DMBP28068 RNA5SP82-201ENST00000516707 92 ntBASIC1.93□□□□□ -2.1
HLA-DMBP28068 RNA5SP402-201ENST00000517148 110 ntBASIC1.93□□□□□ -2.1
HLA-DMBP28068 LINC00535-204ENST00000520513 305 ntTSL 3 BASIC1.93□□□□□ -2.1
HLA-DMBP28068 MTCO1P47-201ENST00000523889 1271 ntBASIC1.93□□□□□ -2.1
HLA-DMBP28068 OR4R1P-201ENST00000529879 463 ntBASIC1.93□□□□□ -2.1
HLA-DMBP28068 OR4P1P-201ENST00000530808 1136 ntBASIC1.93□□□□□ -2.1
HLA-DMBP28068 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC1.93□□□□□ -2.1
HLA-DMBP28068 AC106734.1-201ENST00000568646 663 ntBASIC1.93□□□□□ -2.1
HLA-DMBP28068 MYL12BP1-201ENST00000569826 507 ntBASIC1.93□□□□□ -2.1
HLA-DMBP28068 BPTFP1-201ENST00000579209 492 ntBASIC1.93□□□□□ -2.1
HLA-DMBP28068 AC112503.2-201ENST00000609005 552 ntBASIC1.93□□□□□ -2.1
HLA-DMBP28068 AC027309.3-201ENST00000623419 351 ntBASIC1.93□□□□□ -2.1
HLA-DMBP28068 AC104820.1-201ENST00000624183 307 ntBASIC1.93□□□□□ -2.1
HLA-DMBP28068 AC091925.2-201ENST00000625059 256 ntBASIC1.93□□□□□ -2.1
HLA-DMBP28068 WARS-244ENST00000627608 123 ntTSL 5 BASIC1.93□□□□□ -2.1
HLA-DMBP28068 AP000526.1-201ENST00000603308 1388 ntBASIC1.93□□□□□ -2.1
HLA-DMBP28068 MFSD8-213ENST00000641134 1327 ntBASIC1.92□□□□□ -2.1
HLA-DMBP28068 RNU6-619P-201ENST00000365146 108 ntBASIC1.92□□□□□ -2.1
HLA-DMBP28068 MIR144-201ENST00000384886 86 ntBASIC1.92□□□□□ -2.1
HLA-DMBP28068 MIR627-201ENST00000384979 97 ntBASIC1.92□□□□□ -2.1
HLA-DMBP28068 AL162578.1-201ENST00000406202 378 ntBASIC1.92□□□□□ -2.1
HLA-DMBP28068 MYO16-AS2-201ENST00000412809 436 ntTSL 3 BASIC1.92□□□□□ -2.1
HLA-DMBP28068 TRIM60P5Y-201ENST00000413946 574 ntBASIC1.92□□□□□ -2.1
HLA-DMBP28068 P4HA2-AS1-201ENST00000417667 839 ntTSL 3 BASIC1.92□□□□□ -2.1
HLA-DMBP28068 RPL27AP8-201ENST00000424277 446 ntBASIC1.92□□□□□ -2.1
HLA-DMBP28068 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC1.92□□□□□ -2.1
HLA-DMBP28068 CLEC5A-202ENST00000438351 743 ntTSL 3 BASIC1.92□□□□□ -2.1
HLA-DMBP28068 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC1.92□□□□□ -2.1
HLA-DMBP28068 AP000936.2-201ENST00000447151 681 ntBASIC1.92□□□□□ -2.1
HLA-DMBP28068 LINC00692-201ENST00000451284 932 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
HLA-DMBP28068 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC1.92□□□□□ -2.1
HLA-DMBP28068 MTCO3P2-201ENST00000457365 171 ntBASIC1.92□□□□□ -2.1
HLA-DMBP28068 NAP1L1P3-201ENST00000462291 880 ntBASIC1.92□□□□□ -2.1
HLA-DMBP28068 AC126389.1-201ENST00000477436 290 ntBASIC1.92□□□□□ -2.1
HLA-DMBP28068 AC023424.2-201ENST00000493479 777 ntBASIC1.92□□□□□ -2.1
HLA-DMBP28068 AC093767.1-201ENST00000504523 156 ntBASIC1.92□□□□□ -2.1
HLA-DMBP28068 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC1.92□□□□□ -2.1
HLA-DMBP28068 TEMN3-AS1-201ENST00000510211 401 ntTSL 3 BASIC1.92□□□□□ -2.1
HLA-DMBP28068 AC114781.4-201ENST00000513707 639 ntBASIC1.92□□□□□ -2.1
HLA-DMBP28068 RNU1-104P-201ENST00000517280 175 ntBASIC1.92□□□□□ -2.1
HLA-DMBP28068 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC1.92□□□□□ -2.1
HLA-DMBP28068 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC1.92□□□□□ -2.1
HLA-DMBP28068 PSMA4-206ENST00000558341 719 ntTSL 5 BASIC1.92□□□□□ -2.1
HLA-DMBP28068 TPMTP1-201ENST00000592307 737 ntBASIC1.92□□□□□ -2.1
HLA-DMBP28068 NRBF2P5-201ENST00000603087 788 ntBASIC1.92□□□□□ -2.1
HLA-DMBP28068 RPL23AP92-201ENST00000603609 255 ntBASIC1.92□□□□□ -2.1
HLA-DMBP28068 AC026790.2-201ENST00000606282 430 ntBASIC1.92□□□□□ -2.1
HLA-DMBP28068 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC1.92□□□□□ -2.1
HLA-DMBP28068 CC2D2B-209ENST00000618242 980 ntTSL 5 BASIC1.92□□□□□ -2.1
HLA-DMBP28068 ATP13A5-205ENST00000620313 709 ntTSL 5 BASIC1.92□□□□□ -2.1
HLA-DMBP28068 AC068880.5-201ENST00000624331 290 ntBASIC1.92□□□□□ -2.1
HLA-DMBP28068 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC1.92□□□□□ -2.1
HLA-DMBP28068 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC1.92□□□□□ -2.1
HLA-DMBP28068 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC1.92□□□□□ -2.1
HLA-DMBP28068 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
HLA-DMBP28068 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC1.91□□□□□ -2.1
HLA-DMBP28068 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
HLA-DMBP28068 OR8B3-201ENST00000354597 942 ntAPPRIS P1 BASIC1.91□□□□□ -2.1
HLA-DMBP28068 OR5AC2-201ENST00000358642 930 ntAPPRIS P1 BASIC1.91□□□□□ -2.1
HLA-DMBP28068 RNU6-1155P-201ENST00000363554 107 ntBASIC1.91□□□□□ -2.1
HLA-DMBP28068 MDM4-202ENST00000367180 547 ntTSL 3 BASIC1.91□□□□□ -2.1
HLA-DMBP28068 OR8B2-201ENST00000375013 942 ntAPPRIS P1 BASIC1.91□□□□□ -2.1
HLA-DMBP28068 SNORD51-201ENST00000384320 80 ntBASIC1.91□□□□□ -2.1
HLA-DMBP28068 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
HLA-DMBP28068 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC1.91□□□□□ -2.1
HLA-DMBP28068 AL669831.5-220ENST00000412115 581 ntTSL 3 BASIC1.91□□□□□ -2.1
HLA-DMBP28068 AL160272.1-201ENST00000421509 521 ntTSL 3 BASIC1.91□□□□□ -2.1
HLA-DMBP28068 AL365496.1-201ENST00000426885 215 ntBASIC1.91□□□□□ -2.1
HLA-DMBP28068 AC023128.1-201ENST00000432431 799 ntTSL 3 BASIC1.91□□□□□ -2.1
HLA-DMBP28068 TRIM60P8Y-201ENST00000436338 762 ntBASIC1.91□□□□□ -2.1
HLA-DMBP28068 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC1.91□□□□□ -2.1
HLA-DMBP28068 AL589880.1-201ENST00000448271 287 ntBASIC1.91□□□□□ -2.1
HLA-DMBP28068 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC1.91□□□□□ -2.1
HLA-DMBP28068 CDC42P4-201ENST00000510507 563 ntBASIC1.91□□□□□ -2.1
HLA-DMBP28068 AC118465.1-201ENST00000513820 1271 ntBASIC1.91□□□□□ -2.1
HLA-DMBP28068 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC1.91□□□□□ -2.1
HLA-DMBP28068 AC087272.1-201ENST00000523624 533 ntBASIC1.91□□□□□ -2.1
HLA-DMBP28068 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC1.91□□□□□ -2.1
HLA-DMBP28068 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC1.91□□□□□ -2.1
HLA-DMBP28068 AC243972.3-201ENST00000539655 198 ntBASIC1.91□□□□□ -2.1
HLA-DMBP28068 AC007115.1-201ENST00000546853 234 ntBASIC1.91□□□□□ -2.1
HLA-DMBP28068 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC1.91□□□□□ -2.1
HLA-DMBP28068 AC011260.1-201ENST00000578420 472 ntBASIC1.91□□□□□ -2.1
HLA-DMBP28068 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC1.91□□□□□ -2.1
HLA-DMBP28068 AC006213.5-201ENST00000619673 288 ntBASIC1.91□□□□□ -2.1
HLA-DMBP28068 AL162233.1-201ENST00000620014 944 ntBASIC1.91□□□□□ -2.1
HLA-DMBP28068 IGHVIII-44-202ENST00000636235 289 ntBASIC1.91□□□□□ -2.1
HLA-DMBP28068 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC1.91□□□□□ -2.1
HLA-DMBP28068 AGL-204ENST00000370161 6923 ntTSL 5 BASIC1.91□□□□□ -2.1
HLA-DMBP28068 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
HLA-DMBP28068 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC1.91□□□□□ -2.1
HLA-DMBP28068 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC1.91□□□□□ -2.1
HLA-DMBP28068 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC1.9□□□□□ -2.1
HLA-DMBP28068 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC1.9□□□□□ -2.1
HLA-DMBP28068 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC1.9□□□□□ -2.11
HLA-DMBP28068 SNORD56.4-201ENST00000363883 71 ntBASIC1.9□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 90.6 ms