Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 AC124283.4-201ENST00000581815 456 ntBASIC1.66□□□□□ -2.14
VCANP13611 AC121761.2-201ENST00000617300 689 ntBASIC1.66□□□□□ -2.14
VCANP13611 LINC02246-204ENST00000625278 740 ntTSL 5 BASIC1.66□□□□□ -2.14
VCANP13611 DHFRP5-201ENST00000406944 564 ntBASIC1.66□□□□□ -2.14
VCANP13611 COX6CP12-201ENST00000446748 202 ntBASIC1.66□□□□□ -2.14
VCANP13611 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC1.66□□□□□ -2.14
VCANP13611 AC104435.1-201ENST00000483483 166 ntBASIC1.66□□□□□ -2.14
VCANP13611 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC1.66□□□□□ -2.14
VCANP13611 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC1.66□□□□□ -2.14
VCANP13611 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC1.66□□□□□ -2.14
VCANP13611 MIR708-201ENST00000390708 88 ntBASIC1.65□□□□□ -2.14
VCANP13611 AC003092.2-201ENST00000411946 446 ntTSL 2 BASIC1.65□□□□□ -2.14
VCANP13611 AL354695.1-201ENST00000427935 228 ntBASIC1.65□□□□□ -2.14
VCANP13611 AC024614.2-201ENST00000577584 372 ntBASIC1.65□□□□□ -2.14
VCANP13611 IFI16-205ENST00000368132 2704 ntAPPRIS ALT2 TSL 1 (best) BASIC1.65□□□□□ -2.15
VCANP13611 AL121972.1-201ENST00000402023 252 ntBASIC1.65□□□□□ -2.15
VCANP13611 RPS15AP1-201ENST00000457423 391 ntBASIC1.65□□□□□ -2.15
VCANP13611 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC1.65□□□□□ -2.15
VCANP13611 GTF2IP9-201ENST00000502460 301 ntBASIC1.65□□□□□ -2.15
VCANP13611 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC1.65□□□□□ -2.15
VCANP13611 DNAJC8P1-201ENST00000554535 372 ntBASIC1.65□□□□□ -2.15
VCANP13611 AP000553.5-201ENST00000641933 54 ntBASIC1.65□□□□□ -2.15
VCANP13611 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC1.65□□□□□ -2.15
VCANP13611 AC007342.9-201ENST00000623877 1385 ntBASIC1.65□□□□□ -2.15
VCANP13611 RNU4-13P-201ENST00000364019 141 ntBASIC1.65□□□□□ -2.15
VCANP13611 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC1.65□□□□□ -2.15
VCANP13611 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC1.65□□□□□ -2.15
VCANP13611 MTCO1P48-201ENST00000448024 1096 ntBASIC1.65□□□□□ -2.15
VCANP13611 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC1.65□□□□□ -2.15
VCANP13611 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC1.65□□□□□ -2.15
VCANP13611 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC1.65□□□□□ -2.15
VCANP13611 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC1.65□□□□□ -2.15
VCANP13611 AL137847.3-201ENST00000611521 109 ntBASIC1.65□□□□□ -2.15
VCANP13611 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC1.65□□□□□ -2.15
VCANP13611 AL449363.1-201ENST00000617815 186 ntBASIC1.65□□□□□ -2.15
VCANP13611 RNA5SP160-201ENST00000364866 120 ntBASIC1.64□□□□□ -2.15
VCANP13611 MTCO3P30-201ENST00000426425 670 ntBASIC1.64□□□□□ -2.15
VCANP13611 AC027701.1-202ENST00000520988 459 ntTSL 3 BASIC1.64□□□□□ -2.15
VCANP13611 SUB1P4-201ENST00000566062 339 ntBASIC1.64□□□□□ -2.15
VCANP13611 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC1.64□□□□□ -2.15
VCANP13611 TMEM161BP1-201ENST00000457388 1457 ntBASIC1.64□□□□□ -2.15
VCANP13611 AC093084.1-201ENST00000424233 687 ntBASIC1.64□□□□□ -2.15
VCANP13611 AC005208.1-201ENST00000435112 599 ntTSL 3 BASIC1.64□□□□□ -2.15
VCANP13611 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC1.64□□□□□ -2.15
VCANP13611 AP003049.2-202ENST00000532929 803 ntTSL 3 BASIC1.64□□□□□ -2.15
VCANP13611 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC1.64□□□□□ -2.15
VCANP13611 PWAR6-201ENST00000552334 4618 ntBASIC1.64□□□□□ -2.15
VCANP13611 AC000367.1-201ENST00000452711 1766 ntBASIC1.64□□□□□ -2.15
VCANP13611 ZNF876P-202ENST00000398732 1485 ntBASIC1.64□□□□□ -2.15
VCANP13611 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC1.64□□□□□ -2.15
VCANP13611 MIR193B-201ENST00000384907 83 ntBASIC1.64□□□□□ -2.15
VCANP13611 MIR1323-201ENST00000408090 73 ntBASIC1.64□□□□□ -2.15
VCANP13611 IFNWP4-201ENST00000453148 294 ntBASIC1.64□□□□□ -2.15
VCANP13611 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC1.64□□□□□ -2.15
VCANP13611 HMGN1P8-201ENST00000463578 288 ntBASIC1.64□□□□□ -2.15
VCANP13611 USP9YP5-201ENST00000511770 630 ntBASIC1.64□□□□□ -2.15
VCANP13611 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC1.64□□□□□ -2.15
VCANP13611 RPS3AP23-202ENST00000574601 686 ntBASIC1.64□□□□□ -2.15
VCANP13611 MIR502-201ENST00000606349 86 ntBASIC1.64□□□□□ -2.15
VCANP13611 AL451049.1-201ENST00000608672 497 ntBASIC1.64□□□□□ -2.15
VCANP13611 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC1.63□□□□□ -2.15
VCANP13611 ZNF542P-204ENST00000482727 1305 ntBASIC1.63□□□□□ -2.15
VCANP13611 MIR216A-201ENST00000385063 110 ntBASIC1.63□□□□□ -2.15
VCANP13611 EBAG9P1-201ENST00000418955 543 ntBASIC1.63□□□□□ -2.15
VCANP13611 AL139109.1-201ENST00000455491 297 ntBASIC1.63□□□□□ -2.15
VCANP13611 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC1.63□□□□□ -2.15
VCANP13611 AC009951.2-201ENST00000634873 644 ntTSL 5 BASIC1.63□□□□□ -2.15
VCANP13611 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.63□□□□□ -2.15
VCANP13611 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC1.63□□□□□ -2.15
VCANP13611 RPL23AP7-203ENST00000449021 469 ntBASIC1.63□□□□□ -2.15
VCANP13611 AC109486.1-201ENST00000486833 374 ntBASIC1.63□□□□□ -2.15
VCANP13611 AC006026.1-201ENST00000444025 1803 ntBASIC1.63□□□□□ -2.15
VCANP13611 AGL-204ENST00000370161 6923 ntTSL 5 BASIC1.63□□□□□ -2.15
VCANP13611 HMGN2P19-201ENST00000425149 265 ntBASIC1.62□□□□□ -2.15
VCANP13611 RNU6-1132P-201ENST00000459214 107 ntBASIC1.62□□□□□ -2.15
VCANP13611 TIMM9-203ENST00000555061 598 ntAPPRIS P1 TSL 1 (best) BASIC1.62□□□□□ -2.15
VCANP13611 HMGB1P5-201ENST00000255320 642 ntBASIC1.62□□□□□ -2.15
VCANP13611 RNU6-198P-201ENST00000384258 104 ntBASIC1.62□□□□□ -2.15
VCANP13611 MTCO3P31-201ENST00000405526 789 ntBASIC1.62□□□□□ -2.15
VCANP13611 RNU6ATAC16P-201ENST00000408591 138 ntBASIC1.62□□□□□ -2.15
VCANP13611 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC1.62□□□□□ -2.15
VCANP13611 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC1.62□□□□□ -2.15
VCANP13611 AL021397.1-201ENST00000451806 248 ntBASIC1.62□□□□□ -2.15
VCANP13611 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC1.62□□□□□ -2.15
VCANP13611 RPS29P29-201ENST00000456396 171 ntBASIC1.62□□□□□ -2.15
VCANP13611 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC1.62□□□□□ -2.15
VCANP13611 RNA5SP402-201ENST00000517148 110 ntBASIC1.62□□□□□ -2.15
VCANP13611 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC1.62□□□□□ -2.15
VCANP13611 VPS29-210ENST00000552130 1057 ntTSL 1 (best) BASIC1.62□□□□□ -2.15
VCANP13611 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC1.62□□□□□ -2.15
VCANP13611 SNORA31.11-201ENST00000516528 139 ntBASIC1.62□□□□□ -2.15
VCANP13611 AC098657.3-201ENST00000620434 263 ntBASIC1.62□□□□□ -2.15
VCANP13611 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC1.62□□□□□ -2.15
VCANP13611 MTCO1P14-201ENST00000441695 1559 ntBASIC1.61□□□□□ -2.15
VCANP13611 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC1.61□□□□□ -2.15
VCANP13611 RN7SKP101-201ENST00000411376 320 ntBASIC1.61□□□□□ -2.15
VCANP13611 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC1.61□□□□□ -2.15
VCANP13611 LINC02465-202ENST00000508724 503 ntTSL 3 BASIC1.61□□□□□ -2.15
VCANP13611 AC124069.1-201ENST00000517454 735 ntTSL 3 BASIC1.61□□□□□ -2.15
VCANP13611 AC107294.3-201ENST00000609211 526 ntBASIC1.61□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 133.7 ms