Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
COL6A1P12109 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC4.86□□□□□ -1.63
COL6A1P12109 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC4.86□□□□□ -1.63
COL6A1P12109 AC010587.1-201ENST00000505809 469 ntBASIC4.86□□□□□ -1.63
COL6A1P12109 AC099522.1-202ENST00000514718 367 ntBASIC4.86□□□□□ -1.63
COL6A1P12109 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
COL6A1P12109 AC093027.1-201ENST00000546698 429 ntBASIC4.86□□□□□ -1.63
COL6A1P12109 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC4.86□□□□□ -1.63
COL6A1P12109 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC4.86□□□□□ -1.63
COL6A1P12109 AP000942.4-201ENST00000604811 241 ntBASIC4.86□□□□□ -1.63
COL6A1P12109 AL162730.1-201ENST00000605734 292 ntBASIC4.86□□□□□ -1.63
COL6A1P12109 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC4.86□□□□□ -1.63
COL6A1P12109 FAM27D1-201ENST00000612308 341 ntBASIC4.86□□□□□ -1.63
COL6A1P12109 AC015914.2-201ENST00000618167 288 ntBASIC4.86□□□□□ -1.63
COL6A1P12109 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
COL6A1P12109 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC4.86□□□□□ -1.63
COL6A1P12109 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC4.86□□□□□ -1.63
COL6A1P12109 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC4.86□□□□□ -1.63
COL6A1P12109 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
COL6A1P12109 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
COL6A1P12109 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC4.86□□□□□ -1.63
COL6A1P12109 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
COL6A1P12109 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
COL6A1P12109 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
COL6A1P12109 FAP-203ENST00000443424 2598 ntTSL 2 BASIC4.86□□□□□ -1.63
COL6A1P12109 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
COL6A1P12109 ATP8A2P2-201ENST00000437678 1568 ntBASIC4.86□□□□□ -1.63
COL6A1P12109 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
COL6A1P12109 NUP58P1-201ENST00000502546 1738 ntBASIC4.86□□□□□ -1.63
COL6A1P12109 AC090337.1-201ENST00000579651 2074 ntBASIC4.85□□□□□ -1.63
COL6A1P12109 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
COL6A1P12109 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
COL6A1P12109 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
COL6A1P12109 OR5J1P-201ENST00000313544 939 ntBASIC4.85□□□□□ -1.63
COL6A1P12109 Y_RNA.326-201ENST00000365176 113 ntBASIC4.85□□□□□ -1.63
COL6A1P12109 Y_RNA.381-201ENST00000365666 102 ntBASIC4.85□□□□□ -1.63
COL6A1P12109 RNU6-332P-201ENST00000391193 108 ntBASIC4.85□□□□□ -1.63
COL6A1P12109 RN7SKP32-201ENST00000410167 303 ntBASIC4.85□□□□□ -1.63
COL6A1P12109 AC093578.1-201ENST00000415219 368 ntBASIC4.85□□□□□ -1.63
COL6A1P12109 ELOCP4-201ENST00000420090 333 ntBASIC4.85□□□□□ -1.63
COL6A1P12109 RBM6-203ENST00000421682 684 ntTSL 2 BASIC4.85□□□□□ -1.63
COL6A1P12109 MTCO2P5-201ENST00000422621 426 ntBASIC4.85□□□□□ -1.63
COL6A1P12109 AC019097.1-201ENST00000424783 735 ntBASIC4.85□□□□□ -1.63
COL6A1P12109 RPL35AP12-201ENST00000425362 338 ntBASIC4.85□□□□□ -1.63
COL6A1P12109 AL157831.1-201ENST00000426134 473 ntBASIC4.85□□□□□ -1.63
COL6A1P12109 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC4.85□□□□□ -1.63
COL6A1P12109 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC4.85□□□□□ -1.63
COL6A1P12109 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC4.85□□□□□ -1.63
COL6A1P12109 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
COL6A1P12109 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC4.85□□□□□ -1.63
COL6A1P12109 BNIP3P2-201ENST00000441221 577 ntBASIC4.85□□□□□ -1.63
COL6A1P12109 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC4.85□□□□□ -1.63
COL6A1P12109 AP1S2P1-201ENST00000457344 379 ntBASIC4.85□□□□□ -1.63
COL6A1P12109 RPS27AP17-201ENST00000463344 455 ntBASIC4.85□□□□□ -1.63
COL6A1P12109 AP000873.1-201ENST00000463987 400 ntBASIC4.85□□□□□ -1.63
COL6A1P12109 SNORA19.2-201ENST00000516013 114 ntBASIC4.85□□□□□ -1.63
COL6A1P12109 SNORA40.12-201ENST00000516329 111 ntBASIC4.85□□□□□ -1.63
COL6A1P12109 AC105029.1-201ENST00000520250 669 ntBASIC4.85□□□□□ -1.63
COL6A1P12109 AP003072.1-201ENST00000531740 145 ntBASIC4.85□□□□□ -1.63
COL6A1P12109 AP004242.1-201ENST00000533701 349 ntBASIC4.85□□□□□ -1.63
COL6A1P12109 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC4.85□□□□□ -1.63
COL6A1P12109 AC135001.1-201ENST00000544546 283 ntBASIC4.85□□□□□ -1.63
COL6A1P12109 AC123904.2-201ENST00000548059 300 ntBASIC4.85□□□□□ -1.63
COL6A1P12109 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC4.85□□□□□ -1.63
COL6A1P12109 LARP7P2-201ENST00000575306 125 ntBASIC4.85□□□□□ -1.63
COL6A1P12109 MIR3167-201ENST00000579623 85 ntBASIC4.85□□□□□ -1.63
COL6A1P12109 AL355812.1-201ENST00000603215 216 ntBASIC4.85□□□□□ -1.63
COL6A1P12109 AC025588.3-201ENST00000604182 274 ntBASIC4.85□□□□□ -1.63
COL6A1P12109 AP001836.1-201ENST00000604675 523 ntBASIC4.85□□□□□ -1.63
COL6A1P12109 uc_338.5-201ENST00000611839 155 ntBASIC4.85□□□□□ -1.63
COL6A1P12109 AC007546.1-201ENST00000619452 559 ntBASIC4.85□□□□□ -1.63
COL6A1P12109 AC100810.6-201ENST00000638068 285 ntBASIC4.85□□□□□ -1.63
COL6A1P12109 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
COL6A1P12109 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
COL6A1P12109 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
COL6A1P12109 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
COL6A1P12109 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC4.85□□□□□ -1.63
COL6A1P12109 AC092125.1-201ENST00000562568 1995 ntBASIC4.85□□□□□ -1.63
COL6A1P12109 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC4.85□□□□□ -1.63
COL6A1P12109 AC018529.3-201ENST00000624212 2254 ntBASIC4.85□□□□□ -1.63
COL6A1P12109 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC4.85□□□□□ -1.63
COL6A1P12109 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC4.85□□□□□ -1.63
COL6A1P12109 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC4.85□□□□□ -1.63
COL6A1P12109 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC4.85□□□□□ -1.63
COL6A1P12109 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC4.84□□□□□ -1.63
COL6A1P12109 NOL8P1-201ENST00000508336 3529 ntBASIC4.84□□□□□ -1.63
COL6A1P12109 SAGE4P-201ENST00000442271 3381 ntBASIC4.84□□□□□ -1.63
COL6A1P12109 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC4.84□□□□□ -1.63
COL6A1P12109 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
COL6A1P12109 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC4.84□□□□□ -1.63
COL6A1P12109 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC4.84□□□□□ -1.63
COL6A1P12109 AL161781.1-201ENST00000354277 403 ntBASIC4.84□□□□□ -1.63
COL6A1P12109 FRG1CP-201ENST00000358464 769 ntBASIC4.84□□□□□ -1.63
COL6A1P12109 RNU1-14P-201ENST00000362759 152 ntBASIC4.84□□□□□ -1.63
COL6A1P12109 RNU6-223P-201ENST00000362830 107 ntBASIC4.84□□□□□ -1.63
COL6A1P12109 RNU6-1097P-201ENST00000363586 107 ntBASIC4.84□□□□□ -1.63
COL6A1P12109 SNORA51.6-201ENST00000384151 125 ntBASIC4.84□□□□□ -1.63
COL6A1P12109 RN7SKP235-201ENST00000410662 305 ntBASIC4.84□□□□□ -1.63
COL6A1P12109 AC009161.1-201ENST00000417306 376 ntBASIC4.84□□□□□ -1.63
COL6A1P12109 NCOR1P3-201ENST00000420479 303 ntBASIC4.84□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 150.5 ms