Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
HOXD4P09016 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.14□□□□□ -1.91
HOXD4P09016 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.14□□□□□ -1.91
HOXD4P09016 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
HOXD4P09016 RNU6-433P-201ENST00000363216 104 ntBASIC3.14□□□□□ -1.91
HOXD4P09016 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
HOXD4P09016 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
HOXD4P09016 MT-TH-201ENST00000387441 69 ntBASIC3.14□□□□□ -1.91
HOXD4P09016 SNORA26.8-201ENST00000391306 124 ntBASIC3.14□□□□□ -1.91
HOXD4P09016 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC3.14□□□□□ -1.91
HOXD4P09016 TPMTP3-201ENST00000411928 735 ntBASIC3.14□□□□□ -1.91
HOXD4P09016 AL133384.1-201ENST00000412744 351 ntBASIC3.14□□□□□ -1.91
HOXD4P09016 RPS15AP38-201ENST00000413110 372 ntBASIC3.14□□□□□ -1.91
HOXD4P09016 TRIAP1P1-201ENST00000427062 225 ntBASIC3.14□□□□□ -1.91
HOXD4P09016 AC244035.1-201ENST00000430042 390 ntBASIC3.14□□□□□ -1.91
HOXD4P09016 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC3.14□□□□□ -1.91
HOXD4P09016 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC3.14□□□□□ -1.91
HOXD4P09016 AC098826.1-201ENST00000433943 471 ntBASIC3.14□□□□□ -1.91
HOXD4P09016 MTCO2P16-201ENST00000436962 677 ntBASIC3.14□□□□□ -1.91
HOXD4P09016 FTH1P1-201ENST00000437933 532 ntBASIC3.14□□□□□ -1.91
HOXD4P09016 EEF1E1P1-201ENST00000446998 430 ntBASIC3.14□□□□□ -1.91
HOXD4P09016 AC115115.1-201ENST00000449927 248 ntBASIC3.14□□□□□ -1.91
HOXD4P09016 ZNF114P1-201ENST00000453500 292 ntBASIC3.14□□□□□ -1.91
HOXD4P09016 RPS15AP17-201ENST00000470598 390 ntBASIC3.14□□□□□ -1.91
HOXD4P09016 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC3.14□□□□□ -1.91
HOXD4P09016 AL024509.2-201ENST00000493462 493 ntBASIC3.14□□□□□ -1.91
HOXD4P09016 FCF1P3-201ENST00000496394 590 ntBASIC3.14□□□□□ -1.91
HOXD4P09016 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC3.14□□□□□ -1.91
HOXD4P09016 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC3.14□□□□□ -1.91
HOXD4P09016 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC3.14□□□□□ -1.91
HOXD4P09016 FCF1P8-201ENST00000510322 597 ntBASIC3.14□□□□□ -1.91
HOXD4P09016 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC3.14□□□□□ -1.91
HOXD4P09016 AP003181.1-201ENST00000528811 445 ntTSL 3 BASIC3.14□□□□□ -1.91
HOXD4P09016 AC008127.2-201ENST00000549925 1075 ntBASIC3.14□□□□□ -1.91
HOXD4P09016 AC023161.2-201ENST00000551218 780 ntBASIC3.14□□□□□ -1.91
HOXD4P09016 LSM6P2-201ENST00000552208 177 ntBASIC3.14□□□□□ -1.91
HOXD4P09016 NDUFAF4P1-201ENST00000559425 519 ntBASIC3.14□□□□□ -1.91
HOXD4P09016 ACTR3BP3-201ENST00000565577 979 ntBASIC3.14□□□□□ -1.91
HOXD4P09016 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.14□□□□□ -1.91
HOXD4P09016 AC106782.4-201ENST00000568264 210 ntBASIC3.14□□□□□ -1.91
HOXD4P09016 LINC01893-201ENST00000581750 479 ntTSL 3 BASIC3.14□□□□□ -1.91
HOXD4P09016 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC3.14□□□□□ -1.91
HOXD4P09016 AL355812.1-201ENST00000603215 216 ntBASIC3.14□□□□□ -1.91
HOXD4P09016 ACTR3BP1-201ENST00000605584 1247 ntBASIC3.14□□□□□ -1.91
HOXD4P09016 AC073114.1-201ENST00000612027 490 ntBASIC3.14□□□□□ -1.91
HOXD4P09016 AC008443.7-201ENST00000622195 246 ntBASIC3.14□□□□□ -1.91
HOXD4P09016 AC005858.4-201ENST00000623191 700 ntBASIC3.14□□□□□ -1.91
HOXD4P09016 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC3.14□□□□□ -1.91
HOXD4P09016 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC3.14□□□□□ -1.91
HOXD4P09016 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
HOXD4P09016 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC3.14□□□□□ -1.91
HOXD4P09016 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
HOXD4P09016 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
HOXD4P09016 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.13□□□□□ -1.91
HOXD4P09016 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
HOXD4P09016 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.13□□□□□ -1.91
HOXD4P09016 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.13□□□□□ -1.91
HOXD4P09016 Y_RNA.51-201ENST00000362725 102 ntBASIC3.13□□□□□ -1.91
HOXD4P09016 Y_RNA.77-201ENST00000362962 107 ntBASIC3.13□□□□□ -1.91
HOXD4P09016 SNORA51.2-201ENST00000364595 132 ntBASIC3.13□□□□□ -1.91
HOXD4P09016 RNA5SP88-201ENST00000365560 109 ntBASIC3.13□□□□□ -1.91
HOXD4P09016 MT-TC-201ENST00000387405 66 ntBASIC3.13□□□□□ -1.91
HOXD4P09016 ARF4P3-201ENST00000397387 509 ntBASIC3.13□□□□□ -1.91
HOXD4P09016 RPS3AP26-201ENST00000398259 784 ntBASIC3.13□□□□□ -1.91
HOXD4P09016 HSPE1P26-201ENST00000405341 275 ntBASIC3.13□□□□□ -1.91
HOXD4P09016 RPL7P8-201ENST00000411964 730 ntBASIC3.13□□□□□ -1.91
HOXD4P09016 BTF3L4P1-201ENST00000413813 468 ntBASIC3.13□□□□□ -1.91
HOXD4P09016 RPL23AP39-201ENST00000415533 405 ntBASIC3.13□□□□□ -1.91
HOXD4P09016 OFD1P11Y-201ENST00000418213 1177 ntBASIC3.13□□□□□ -1.91
HOXD4P09016 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC3.13□□□□□ -1.91
HOXD4P09016 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC3.13□□□□□ -1.91
HOXD4P09016 BX890604.2-201ENST00000427883 474 ntBASIC3.13□□□□□ -1.91
HOXD4P09016 AC005300.1-201ENST00000428401 373 ntBASIC3.13□□□□□ -1.91
HOXD4P09016 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC3.13□□□□□ -1.91
HOXD4P09016 TAF9P1-201ENST00000445421 515 ntBASIC3.13□□□□□ -1.91
HOXD4P09016 MTND1P29-201ENST00000448112 647 ntBASIC3.13□□□□□ -1.91
HOXD4P09016 AC009961.3-201ENST00000449832 765 ntBASIC3.13□□□□□ -1.91
HOXD4P09016 AC104073.1-201ENST00000451988 151 ntBASIC3.13□□□□□ -1.91
HOXD4P09016 TAF9P2-201ENST00000454958 515 ntBASIC3.13□□□□□ -1.91
HOXD4P09016 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC3.13□□□□□ -1.91
HOXD4P09016 TRBV26-201ENST00000456572 344 ntBASIC3.13□□□□□ -1.91
HOXD4P09016 TPTE2P5-203ENST00000458118 728 ntBASIC3.13□□□□□ -1.91
HOXD4P09016 AC097493.1-201ENST00000463958 372 ntBASIC3.13□□□□□ -1.91
HOXD4P09016 MTND4LP3-201ENST00000468320 276 ntBASIC3.13□□□□□ -1.91
HOXD4P09016 FSBP-201ENST00000481490 1158 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
HOXD4P09016 AC108860.1-201ENST00000484521 383 ntBASIC3.13□□□□□ -1.91
HOXD4P09016 RN7SL283P-201ENST00000489055 303 ntBASIC3.13□□□□□ -1.91
HOXD4P09016 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC3.13□□□□□ -1.91
HOXD4P09016 OR5H5P-201ENST00000503164 928 ntBASIC3.13□□□□□ -1.91
HOXD4P09016 LEF1-218ENST00000512172 598 ntTSL 2 BASIC3.13□□□□□ -1.91
HOXD4P09016 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC3.13□□□□□ -1.91
HOXD4P09016 RNU6-150P-201ENST00000516237 95 ntBASIC3.13□□□□□ -1.91
HOXD4P09016 IGKV2D-36-201ENST00000518643 226 ntBASIC3.13□□□□□ -1.91
HOXD4P09016 AC106038.2-201ENST00000520706 568 ntBASIC3.13□□□□□ -1.91
HOXD4P09016 AC239860.2-201ENST00000525886 270 ntBASIC3.13□□□□□ -1.91
HOXD4P09016 MTCYBP41-201ENST00000528913 1123 ntBASIC3.13□□□□□ -1.91
HOXD4P09016 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC3.13□□□□□ -1.91
HOXD4P09016 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC3.13□□□□□ -1.91
HOXD4P09016 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC3.13□□□□□ -1.91
HOXD4P09016 ROCK1P1-201ENST00000573767 549 ntBASIC3.13□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 106.8 ms