Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC3.14□□□□□ -1.91
CLDN3O15551 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
CLDN3O15551 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC3.14□□□□□ -1.91
CLDN3O15551 AL356473.1-201ENST00000406203 1408 ntBASIC3.14□□□□□ -1.91
CLDN3O15551 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
CLDN3O15551 TFPI-202ENST00000339091 1088 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
CLDN3O15551 DEFB108F-201ENST00000344638 222 ntBASIC3.14□□□□□ -1.91
CLDN3O15551 MTATP6P19-201ENST00000413797 659 ntBASIC3.14□□□□□ -1.91
CLDN3O15551 AC012498.1-201ENST00000424037 437 ntBASIC3.14□□□□□ -1.91
CLDN3O15551 GNGT1-202ENST00000428834 731 ntTSL 3 BASIC3.14□□□□□ -1.91
CLDN3O15551 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC3.14□□□□□ -1.91
CLDN3O15551 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC3.14□□□□□ -1.91
CLDN3O15551 AC005208.1-201ENST00000435112 599 ntTSL 3 BASIC3.14□□□□□ -1.91
CLDN3O15551 NDUFB4P6-201ENST00000436819 366 ntBASIC3.14□□□□□ -1.91
CLDN3O15551 AC107083.1-201ENST00000439643 279 ntBASIC3.14□□□□□ -1.91
CLDN3O15551 AC234775.1-201ENST00000454247 670 ntBASIC3.14□□□□□ -1.91
CLDN3O15551 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC3.14□□□□□ -1.91
CLDN3O15551 RPL31P60-201ENST00000478450 367 ntBASIC3.14□□□□□ -1.91
CLDN3O15551 MTCYBP17-201ENST00000503579 789 ntBASIC3.14□□□□□ -1.91
CLDN3O15551 AC114981.1-201ENST00000503897 678 ntBASIC3.14□□□□□ -1.91
CLDN3O15551 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC3.14□□□□□ -1.91
CLDN3O15551 AC097462.2-201ENST00000504623 481 ntBASIC3.14□□□□□ -1.91
CLDN3O15551 SCARNA13-201ENST00000516672 275 ntBASIC3.14□□□□□ -1.91
CLDN3O15551 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC3.14□□□□□ -1.91
CLDN3O15551 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.14□□□□□ -1.91
CLDN3O15551 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC3.14□□□□□ -1.91
CLDN3O15551 DEFB108D-201ENST00000527787 222 ntBASIC3.14□□□□□ -1.91
CLDN3O15551 AC118942.1-201ENST00000529674 1035 ntBASIC3.14□□□□□ -1.91
CLDN3O15551 SPIC-201ENST00000551346 1132 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
CLDN3O15551 EIF4BP1-201ENST00000554881 351 ntBASIC3.14□□□□□ -1.91
CLDN3O15551 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC3.14□□□□□ -1.91
CLDN3O15551 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC3.14□□□□□ -1.91
CLDN3O15551 DNAJC19P3-201ENST00000594491 331 ntBASIC3.14□□□□□ -1.91
CLDN3O15551 AC023158.2-201ENST00000614876 543 ntBASIC3.14□□□□□ -1.91
CLDN3O15551 AL158163.2-201ENST00000619110 700 ntBASIC3.14□□□□□ -1.91
CLDN3O15551 AC022509.4-201ENST00000621404 572 ntBASIC3.14□□□□□ -1.91
CLDN3O15551 AC006386.2-201ENST00000624491 75 ntBASIC3.14□□□□□ -1.91
CLDN3O15551 AC012005.1-201ENST00000624575 75 ntBASIC3.14□□□□□ -1.91
CLDN3O15551 AP000720.1-201ENST00000625091 483 ntBASIC3.14□□□□□ -1.91
CLDN3O15551 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC3.14□□□□□ -1.91
CLDN3O15551 AC013437.2-201ENST00000639587 677 ntBASIC3.14□□□□□ -1.91
CLDN3O15551 TIGD2-201ENST00000317005 2083 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
CLDN3O15551 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC3.14□□□□□ -1.91
CLDN3O15551 RNU4-51P-201ENST00000364206 140 ntBASIC3.13□□□□□ -1.91
CLDN3O15551 RNA5SP252-201ENST00000391131 119 ntBASIC3.13□□□□□ -1.91
CLDN3O15551 AL031679.1-201ENST00000400616 525 ntBASIC3.13□□□□□ -1.91
CLDN3O15551 SUMO1-205ENST00000409205 534 ntTSL 2 BASIC3.13□□□□□ -1.91
CLDN3O15551 RN7SKP58-201ENST00000411010 305 ntBASIC3.13□□□□□ -1.91
CLDN3O15551 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC3.13□□□□□ -1.91
CLDN3O15551 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC3.13□□□□□ -1.91
CLDN3O15551 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC3.13□□□□□ -1.91
CLDN3O15551 AC092573.2-201ENST00000434546 243 ntBASIC3.13□□□□□ -1.91
CLDN3O15551 MTCYBP45-201ENST00000435243 565 ntBASIC3.13□□□□□ -1.91
CLDN3O15551 MTND2P20-201ENST00000440805 661 ntBASIC3.13□□□□□ -1.91
CLDN3O15551 NIPA2P5-201ENST00000452282 464 ntBASIC3.13□□□□□ -1.91
CLDN3O15551 AL049714.1-201ENST00000466686 347 ntBASIC3.13□□□□□ -1.91
CLDN3O15551 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
CLDN3O15551 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC3.13□□□□□ -1.91
CLDN3O15551 AC113347.3-201ENST00000509113 148 ntBASIC3.13□□□□□ -1.91
CLDN3O15551 RN7SKP282-201ENST00000516824 299 ntBASIC3.13□□□□□ -1.91
CLDN3O15551 AC239860.2-201ENST00000525886 270 ntBASIC3.13□□□□□ -1.91
CLDN3O15551 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
CLDN3O15551 AL163973.2-201ENST00000548096 288 ntTSL 3 BASIC3.13□□□□□ -1.91
CLDN3O15551 AC114546.1-201ENST00000560140 473 ntTSL 3 BASIC3.13□□□□□ -1.91
CLDN3O15551 MTND3P13-201ENST00000574391 343 ntBASIC3.13□□□□□ -1.91
CLDN3O15551 AC090079.2-201ENST00000575289 768 ntBASIC3.13□□□□□ -1.91
CLDN3O15551 AC011260.1-201ENST00000578420 472 ntBASIC3.13□□□□□ -1.91
CLDN3O15551 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC3.13□□□□□ -1.91
CLDN3O15551 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.13□□□□□ -1.91
CLDN3O15551 AC024153.1-201ENST00000603103 365 ntBASIC3.13□□□□□ -1.91
CLDN3O15551 AP000254.1-201ENST00000609934 520 ntBASIC3.13□□□□□ -1.91
CLDN3O15551 AC091046.2-201ENST00000620775 665 ntBASIC3.13□□□□□ -1.91
CLDN3O15551 AC104985.3-201ENST00000623479 597 ntBASIC3.13□□□□□ -1.91
CLDN3O15551 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC3.13□□□□□ -1.91
CLDN3O15551 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.13□□□□□ -1.91
CLDN3O15551 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC3.13□□□□□ -1.91
CLDN3O15551 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
CLDN3O15551 AC008568.2-201ENST00000623862 2313 ntBASIC3.12□□□□□ -1.91
CLDN3O15551 FRG1BP-201ENST00000278882 761 ntBASIC3.12□□□□□ -1.91
CLDN3O15551 RNU6-28P-201ENST00000362378 107 ntBASIC3.12□□□□□ -1.91
CLDN3O15551 RNU6-7-201ENST00000364784 107 ntBASIC3.12□□□□□ -1.91
CLDN3O15551 RNU6-8-201ENST00000365467 107 ntBASIC3.12□□□□□ -1.91
CLDN3O15551 DYNLT3P1-201ENST00000378574 347 ntBASIC3.12□□□□□ -1.91
CLDN3O15551 SNORA40.2-201ENST00000390847 128 ntBASIC3.12□□□□□ -1.91
CLDN3O15551 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
CLDN3O15551 AL513128.1-201ENST00000422675 469 ntTSL 5 BASIC3.12□□□□□ -1.91
CLDN3O15551 OR2B8P-201ENST00000432841 938 ntBASIC3.12□□□□□ -1.91
CLDN3O15551 MTND4P6-201ENST00000438297 472 ntBASIC3.12□□□□□ -1.91
CLDN3O15551 SDCBPP1-201ENST00000440192 890 ntBASIC3.12□□□□□ -1.91
CLDN3O15551 AL135938.1-201ENST00000443141 297 ntBASIC3.12□□□□□ -1.91
CLDN3O15551 TRGVB-201ENST00000453257 471 ntBASIC3.12□□□□□ -1.91
CLDN3O15551 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC3.12□□□□□ -1.91
CLDN3O15551 AC006445.2-201ENST00000510061 472 ntBASIC3.12□□□□□ -1.91
CLDN3O15551 RNU6-583P-201ENST00000516012 92 ntBASIC3.12□□□□□ -1.91
CLDN3O15551 AC103783.1-201ENST00000520506 373 ntBASIC3.12□□□□□ -1.91
CLDN3O15551 AC010376.1-201ENST00000522101 334 ntBASIC3.12□□□□□ -1.91
CLDN3O15551 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
CLDN3O15551 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC3.12□□□□□ -1.91
CLDN3O15551 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC3.12□□□□□ -1.91
CLDN3O15551 AC083760.1-201ENST00000589621 670 ntBASIC3.12□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 100.2 ms