Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 RNU6-53P-201ENST00000365367 106 ntBASIC2.73□□□□□ -1.97
CCDC88BA6NC98 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC2.73□□□□□ -1.97
CCDC88BA6NC98 SUMO2P12-201ENST00000405924 140 ntBASIC2.73□□□□□ -1.97
CCDC88BA6NC98 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC2.73□□□□□ -1.97
CCDC88BA6NC98 HMGB3P10-201ENST00000434734 572 ntBASIC2.73□□□□□ -1.97
CCDC88BA6NC98 AL589963.1-201ENST00000449282 727 ntTSL 3 BASIC2.73□□□□□ -1.97
CCDC88BA6NC98 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC2.73□□□□□ -1.97
CCDC88BA6NC98 AL161670.1-201ENST00000554348 137 ntBASIC2.73□□□□□ -1.97
CCDC88BA6NC98 AC006270.2-201ENST00000578523 652 ntBASIC2.73□□□□□ -1.97
CCDC88BA6NC98 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC2.73□□□□□ -1.97
CCDC88BA6NC98 AC105429.2-201ENST00000610567 517 ntBASIC2.73□□□□□ -1.97
CCDC88BA6NC98 MIR6895-201ENST00000613497 78 ntBASIC2.73□□□□□ -1.97
CCDC88BA6NC98 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC2.73□□□□□ -1.97
CCDC88BA6NC98 Y_RNA.327-201ENST00000365201 102 ntBASIC2.72□□□□□ -1.97
CCDC88BA6NC98 RPL5P19-201ENST00000404228 893 ntBASIC2.72□□□□□ -1.97
CCDC88BA6NC98 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC2.72□□□□□ -1.97
CCDC88BA6NC98 AL391839.1-201ENST00000417447 265 ntTSL 2 BASIC2.72□□□□□ -1.97
CCDC88BA6NC98 MTND4LP13-201ENST00000425022 298 ntBASIC2.72□□□□□ -1.97
CCDC88BA6NC98 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC2.72□□□□□ -1.97
CCDC88BA6NC98 ARPC3P2-201ENST00000457786 533 ntBASIC2.72□□□□□ -1.97
CCDC88BA6NC98 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC2.72□□□□□ -1.97
CCDC88BA6NC98 AC026347.1-201ENST00000463255 474 ntTSL 3 BASIC2.72□□□□□ -1.97
CCDC88BA6NC98 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC2.72□□□□□ -1.97
CCDC88BA6NC98 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
CCDC88BA6NC98 MIR7-2-201ENST00000384970 110 ntBASIC2.71□□□□□ -1.97
CCDC88BA6NC98 PAICSP7-201ENST00000419829 962 ntBASIC2.71□□□□□ -1.97
CCDC88BA6NC98 OR51B8P-201ENST00000449892 769 ntBASIC2.71□□□□□ -1.97
CCDC88BA6NC98 RGS5-217ENST00000451759 835 ntTSL 3 BASIC2.71□□□□□ -1.97
CCDC88BA6NC98 AL135786.2-201ENST00000608422 615 ntBASIC2.71□□□□□ -1.97
CCDC88BA6NC98 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC2.71□□□□□ -1.98
CCDC88BA6NC98 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.71□□□□□ -1.98
CCDC88BA6NC98 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.71□□□□□ -1.98
CCDC88BA6NC98 MTND5P12-201ENST00000502851 1449 ntBASIC2.71□□□□□ -1.98
CCDC88BA6NC98 HSPE1P11-201ENST00000339579 310 ntBASIC2.71□□□□□ -1.98
CCDC88BA6NC98 MTCO1P43-201ENST00000431831 488 ntBASIC2.71□□□□□ -1.98
CCDC88BA6NC98 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC2.71□□□□□ -1.98
CCDC88BA6NC98 MTCO1P42-201ENST00000457379 726 ntBASIC2.71□□□□□ -1.98
CCDC88BA6NC98 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC2.71□□□□□ -1.98
CCDC88BA6NC98 SETP2-201ENST00000553886 926 ntBASIC2.71□□□□□ -1.98
CCDC88BA6NC98 AL163153.1-201ENST00000554223 283 ntBASIC2.71□□□□□ -1.98
CCDC88BA6NC98 SNORD53B-201ENST00000577887 78 ntBASIC2.71□□□□□ -1.98
CCDC88BA6NC98 MYL12B-204ENST00000584539 1064 ntAPPRIS P1 TSL 3 BASIC2.71□□□□□ -1.98
CCDC88BA6NC98 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC2.71□□□□□ -1.98
CCDC88BA6NC98 AC018754.1-201ENST00000607486 925 ntBASIC2.71□□□□□ -1.98
CCDC88BA6NC98 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC2.7□□□□□ -1.98
CCDC88BA6NC98 Y_RNA.122-201ENST00000363331 96 ntBASIC2.7□□□□□ -1.98
CCDC88BA6NC98 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC2.7□□□□□ -1.98
CCDC88BA6NC98 SNRPFP4-201ENST00000456366 242 ntBASIC2.7□□□□□ -1.98
CCDC88BA6NC98 MTRNR2L5-201ENST00000512524 739 ntAPPRIS P1 BASIC2.7□□□□□ -1.98
CCDC88BA6NC98 AC010735.1-201ENST00000567305 1026 ntBASIC2.7□□□□□ -1.98
CCDC88BA6NC98 MIR4512-201ENST00000583257 77 ntBASIC2.7□□□□□ -1.98
CCDC88BA6NC98 AC019159.1-201ENST00000605094 187 ntBASIC2.7□□□□□ -1.98
CCDC88BA6NC98 SNHG22-203ENST00000617833 660 ntBASIC2.7□□□□□ -1.98
CCDC88BA6NC98 FO624990.1-201ENST00000636373 85 ntBASIC2.7□□□□□ -1.98
CCDC88BA6NC98 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
CCDC88BA6NC98 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC2.69□□□□□ -1.98
CCDC88BA6NC98 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC2.69□□□□□ -1.98
CCDC88BA6NC98 ELOCP10-201ENST00000440624 327 ntBASIC2.69□□□□□ -1.98
CCDC88BA6NC98 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC2.69□□□□□ -1.98
CCDC88BA6NC98 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC2.69□□□□□ -1.98
CCDC88BA6NC98 ZBTB8OS-205ENST00000465588 548 ntTSL 2 BASIC2.69□□□□□ -1.98
CCDC88BA6NC98 AC124069.1-201ENST00000517454 735 ntTSL 3 BASIC2.69□□□□□ -1.98
CCDC88BA6NC98 AC087636.1-201ENST00000554787 573 ntTSL 4 BASIC2.69□□□□□ -1.98
CCDC88BA6NC98 OR4K8P-201ENST00000578842 1048 ntBASIC2.69□□□□□ -1.98
CCDC88BA6NC98 MIR4448-201ENST00000584360 86 ntBASIC2.69□□□□□ -1.98
CCDC88BA6NC98 ELOCP34-201ENST00000604436 327 ntBASIC2.69□□□□□ -1.98
CCDC88BA6NC98 CNOT6LP1-201ENST00000559681 1462 ntBASIC2.68□□□□□ -1.98
CCDC88BA6NC98 SNORA7.1-201ENST00000363750 139 ntBASIC2.68□□□□□ -1.98
CCDC88BA6NC98 RPL7P37-201ENST00000425095 738 ntBASIC2.68□□□□□ -1.98
CCDC88BA6NC98 TTTY19-201ENST00000453955 269 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
CCDC88BA6NC98 PPP1R2P5-201ENST00000457256 603 ntBASIC2.68□□□□□ -1.98
CCDC88BA6NC98 RPL21P39-201ENST00000463605 483 ntBASIC2.68□□□□□ -1.98
CCDC88BA6NC98 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
CCDC88BA6NC98 AC005912.1-201ENST00000495392 255 ntBASIC2.68□□□□□ -1.98
CCDC88BA6NC98 RNA5SP490-201ENST00000517141 136 ntBASIC2.68□□□□□ -1.98
CCDC88BA6NC98 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC2.68□□□□□ -1.98
CCDC88BA6NC98 VN1R84P-201ENST00000593697 235 ntBASIC2.68□□□□□ -1.98
CCDC88BA6NC98 AC009318.3-201ENST00000616916 503 ntBASIC2.68□□□□□ -1.98
CCDC88BA6NC98 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC2.68□□□□□ -1.98
CCDC88BA6NC98 BX649567.1-201ENST00000642071 1134 ntBASIC2.68□□□□□ -1.98
CCDC88BA6NC98 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
CCDC88BA6NC98 CFHR1-201ENST00000320493 1271 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
CCDC88BA6NC98 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC2.67□□□□□ -1.98
CCDC88BA6NC98 DNAJC19P4-201ENST00000440115 345 ntBASIC2.67□□□□□ -1.98
CCDC88BA6NC98 SNORD108-201ENST00000459332 71 ntBASIC2.67□□□□□ -1.98
CCDC88BA6NC98 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC2.67□□□□□ -1.98
CCDC88BA6NC98 LINC02480-201ENST00000511875 612 ntTSL 2 BASIC2.67□□□□□ -1.98
CCDC88BA6NC98 AC114546.1-201ENST00000560140 473 ntTSL 3 BASIC2.67□□□□□ -1.98
CCDC88BA6NC98 AC107982.2-201ENST00000577360 463 ntTSL 5 BASIC2.67□□□□□ -1.98
CCDC88BA6NC98 MIR4446-201ENST00000578505 67 ntBASIC2.67□□□□□ -1.98
CCDC88BA6NC98 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC2.67□□□□□ -1.98
CCDC88BA6NC98 PSMD5-AS1-215ENST00000640622 205 ntBASIC2.67□□□□□ -1.98
CCDC88BA6NC98 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.67□□□□□ -1.98
CCDC88BA6NC98 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.67□□□□□ -1.98
CCDC88BA6NC98 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
CCDC88BA6NC98 AC131280.1-202ENST00000624067 4211 ntBASIC2.66□□□□□ -1.98
CCDC88BA6NC98 AC009237.2-201ENST00000421358 284 ntBASIC2.66□□□□□ -1.98
CCDC88BA6NC98 HMGN2P19-201ENST00000425149 265 ntBASIC2.66□□□□□ -1.98
CCDC88BA6NC98 TRIM60P18-201ENST00000441518 828 ntBASIC2.66□□□□□ -1.98
CCDC88BA6NC98 AC068781.1-201ENST00000488231 618 ntBASIC2.66□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 105.3 ms