Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 RPL12P22-201ENST00000519073 490 ntBASIC3.57□□□□□ -1.84
CPSF3Q9UKF6 CTHRC1-204ENST00000520880 560 ntTSL 4 BASIC3.57□□□□□ -1.84
CPSF3Q9UKF6 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
CPSF3Q9UKF6 OR6C7P-201ENST00000547875 934 ntBASIC3.57□□□□□ -1.84
CPSF3Q9UKF6 LINC01481-201ENST00000552998 629 ntTSL 2 BASIC3.57□□□□□ -1.84
CPSF3Q9UKF6 AL391156.1-201ENST00000554965 554 ntBASIC3.57□□□□□ -1.84
CPSF3Q9UKF6 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC3.57□□□□□ -1.84
CPSF3Q9UKF6 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC3.57□□□□□ -1.84
CPSF3Q9UKF6 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC3.57□□□□□ -1.84
CPSF3Q9UKF6 ZNF415P1-201ENST00000582279 1166 ntBASIC3.57□□□□□ -1.84
CPSF3Q9UKF6 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC3.57□□□□□ -1.84
CPSF3Q9UKF6 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC3.57□□□□□ -1.84
CPSF3Q9UKF6 AC006539.2-201ENST00000601729 572 ntBASIC3.57□□□□□ -1.84
CPSF3Q9UKF6 AC005183.1-201ENST00000603687 1979 ntBASIC3.57□□□□□ -1.84
CPSF3Q9UKF6 uc_338.1-201ENST00000612113 180 ntBASIC3.57□□□□□ -1.84
CPSF3Q9UKF6 AL596245.1-201ENST00000618994 362 ntBASIC3.57□□□□□ -1.84
CPSF3Q9UKF6 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC3.57□□□□□ -1.84
CPSF3Q9UKF6 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.57□□□□□ -1.84
CPSF3Q9UKF6 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.57□□□□□ -1.84
CPSF3Q9UKF6 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC3.56□□□□□ -1.84
CPSF3Q9UKF6 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
CPSF3Q9UKF6 AC087359.1-201ENST00000508335 1740 ntBASIC3.56□□□□□ -1.84
CPSF3Q9UKF6 RNU6-1074P-201ENST00000383995 104 ntBASIC3.56□□□□□ -1.84
CPSF3Q9UKF6 Y_RNA.548-201ENST00000384656 105 ntBASIC3.56□□□□□ -1.84
CPSF3Q9UKF6 RNA5SP229-201ENST00000410809 99 ntBASIC3.56□□□□□ -1.84
CPSF3Q9UKF6 RNU6-55P-201ENST00000411092 107 ntBASIC3.56□□□□□ -1.84
CPSF3Q9UKF6 RNU6-954P-201ENST00000411355 107 ntBASIC3.56□□□□□ -1.84
CPSF3Q9UKF6 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
CPSF3Q9UKF6 AC098592.1-201ENST00000419352 333 ntBASIC3.56□□□□□ -1.84
CPSF3Q9UKF6 AC011233.1-201ENST00000422812 283 ntBASIC3.56□□□□□ -1.84
CPSF3Q9UKF6 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.56□□□□□ -1.84
CPSF3Q9UKF6 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC3.56□□□□□ -1.84
CPSF3Q9UKF6 SDCBPP1-201ENST00000440192 890 ntBASIC3.56□□□□□ -1.84
CPSF3Q9UKF6 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC3.56□□□□□ -1.84
CPSF3Q9UKF6 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC3.56□□□□□ -1.84
CPSF3Q9UKF6 RPL23AP35-201ENST00000451906 501 ntBASIC3.56□□□□□ -1.84
CPSF3Q9UKF6 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC3.56□□□□□ -1.84
CPSF3Q9UKF6 SNRPG-206ENST00000454893 527 ntTSL 3 BASIC3.56□□□□□ -1.84
CPSF3Q9UKF6 AL157373.1-201ENST00000456036 276 ntTSL 3 BASIC3.56□□□□□ -1.84
CPSF3Q9UKF6 RN7SL807P-201ENST00000470923 297 ntBASIC3.56□□□□□ -1.84
CPSF3Q9UKF6 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
CPSF3Q9UKF6 HMGB1P36-201ENST00000487709 576 ntBASIC3.56□□□□□ -1.84
CPSF3Q9UKF6 AC104685.1-201ENST00000502445 371 ntBASIC3.56□□□□□ -1.84
CPSF3Q9UKF6 AC110794.1-201ENST00000505816 425 ntBASIC3.56□□□□□ -1.84
CPSF3Q9UKF6 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC3.56□□□□□ -1.84
CPSF3Q9UKF6 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC3.56□□□□□ -1.84
CPSF3Q9UKF6 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC3.56□□□□□ -1.84
CPSF3Q9UKF6 AC090857.2-201ENST00000526362 723 ntTSL 2 BASIC3.56□□□□□ -1.84
CPSF3Q9UKF6 DUXAP5-201ENST00000529668 529 ntBASIC3.56□□□□□ -1.84
CPSF3Q9UKF6 HIGD1AP1-201ENST00000550979 275 ntBASIC3.56□□□□□ -1.84
CPSF3Q9UKF6 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC3.56□□□□□ -1.84
CPSF3Q9UKF6 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC3.56□□□□□ -1.84
CPSF3Q9UKF6 NDUFV2-AS1-202ENST00000583081 399 ntTSL 5 BASIC3.56□□□□□ -1.84
CPSF3Q9UKF6 BBIP1P1-201ENST00000602999 279 ntBASIC3.56□□□□□ -1.84
CPSF3Q9UKF6 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.56□□□□□ -1.84
CPSF3Q9UKF6 AC004853.1-201ENST00000604902 698 ntBASIC3.56□□□□□ -1.84
CPSF3Q9UKF6 AL365503.1-201ENST00000605247 905 ntBASIC3.56□□□□□ -1.84
CPSF3Q9UKF6 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC3.56□□□□□ -1.84
CPSF3Q9UKF6 AL353748.2-201ENST00000622148 471 ntBASIC3.56□□□□□ -1.84
CPSF3Q9UKF6 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC3.56□□□□□ -1.84
CPSF3Q9UKF6 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
CPSF3Q9UKF6 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC3.55□□□□□ -1.84
CPSF3Q9UKF6 OR5H2-202ENST00000356526 930 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
CPSF3Q9UKF6 RNU6-28P-201ENST00000362378 107 ntBASIC3.55□□□□□ -1.84
CPSF3Q9UKF6 RNU6-433P-201ENST00000363216 104 ntBASIC3.55□□□□□ -1.84
CPSF3Q9UKF6 RNU6-289P-201ENST00000364093 107 ntBASIC3.55□□□□□ -1.84
CPSF3Q9UKF6 RNU2-47P-201ENST00000410649 186 ntBASIC3.55□□□□□ -1.84
CPSF3Q9UKF6 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC3.55□□□□□ -1.84
CPSF3Q9UKF6 YPEL5P1-201ENST00000419731 367 ntBASIC3.55□□□□□ -1.84
CPSF3Q9UKF6 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC3.55□□□□□ -1.84
CPSF3Q9UKF6 AC079780.1-201ENST00000428259 207 ntBASIC3.55□□□□□ -1.84
CPSF3Q9UKF6 AC091862.1-201ENST00000438016 1100 ntBASIC3.55□□□□□ -1.84
CPSF3Q9UKF6 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.55□□□□□ -1.84
CPSF3Q9UKF6 BX510359.1-201ENST00000456973 237 ntBASIC3.55□□□□□ -1.84
CPSF3Q9UKF6 ARPC3P2-201ENST00000457786 533 ntBASIC3.55□□□□□ -1.84
CPSF3Q9UKF6 AC098862.1-201ENST00000504991 413 ntBASIC3.55□□□□□ -1.84
CPSF3Q9UKF6 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC3.55□□□□□ -1.84
CPSF3Q9UKF6 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC3.55□□□□□ -1.84
CPSF3Q9UKF6 RNU6-1095P-201ENST00000516148 108 ntBASIC3.55□□□□□ -1.84
CPSF3Q9UKF6 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC3.55□□□□□ -1.84
CPSF3Q9UKF6 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC3.55□□□□□ -1.84
CPSF3Q9UKF6 AC239860.2-201ENST00000525886 270 ntBASIC3.55□□□□□ -1.84
CPSF3Q9UKF6 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC3.55□□□□□ -1.84
CPSF3Q9UKF6 AC078962.4-201ENST00000546135 254 ntTSL 3 BASIC3.55□□□□□ -1.84
CPSF3Q9UKF6 OR7K1P-201ENST00000546439 926 ntBASIC3.55□□□□□ -1.84
CPSF3Q9UKF6 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC3.55□□□□□ -1.84
CPSF3Q9UKF6 ELOCP32-201ENST00000548625 324 ntBASIC3.55□□□□□ -1.84
CPSF3Q9UKF6 AL163153.1-201ENST00000554223 283 ntBASIC3.55□□□□□ -1.84
CPSF3Q9UKF6 AL845331.3-202ENST00000562856 261 ntBASIC3.55□□□□□ -1.84
CPSF3Q9UKF6 BNIP3P22-201ENST00000593399 556 ntBASIC3.55□□□□□ -1.84
CPSF3Q9UKF6 VN1R92P-201ENST00000598511 928 ntBASIC3.55□□□□□ -1.84
CPSF3Q9UKF6 BDH2P1-201ENST00000602288 736 ntBASIC3.55□□□□□ -1.84
CPSF3Q9UKF6 AL606834.2-201ENST00000602954 668 ntBASIC3.55□□□□□ -1.84
CPSF3Q9UKF6 AC018714.1-201ENST00000605028 208 ntBASIC3.55□□□□□ -1.84
CPSF3Q9UKF6 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC3.55□□□□□ -1.84
CPSF3Q9UKF6 AC008147.4-201ENST00000617570 1204 ntBASIC3.55□□□□□ -1.84
CPSF3Q9UKF6 AC131159.1-201ENST00000621854 213 ntBASIC3.55□□□□□ -1.84
CPSF3Q9UKF6 AL121759.2-201ENST00000636173 570 ntTSL 4 BASIC3.55□□□□□ -1.84
CPSF3Q9UKF6 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.55□□□□□ -1.84
CPSF3Q9UKF6 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.55□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 160 ms