Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 AC090971.2-201ENST00000558142 510 ntTSL 3 BASIC1.9□□□□□ -2.11
SCN3AQ9NY46 AC027104.1-201ENST00000563702 681 ntBASIC1.9□□□□□ -2.11
SCN3AQ9NY46 OR4K7P-201ENST00000580232 945 ntBASIC1.9□□□□□ -2.11
SCN3AQ9NY46 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC1.9□□□□□ -2.11
SCN3AQ9NY46 AP000553.5-201ENST00000641933 54 ntBASIC1.9□□□□□ -2.11
SCN3AQ9NY46 MTND5P28-201ENST00000438005 1594 ntBASIC1.9□□□□□ -2.11
SCN3AQ9NY46 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC1.9□□□□□ -2.11
SCN3AQ9NY46 CD24P4-201ENST00000382840 243 ntBASIC1.9□□□□□ -2.11
SCN3AQ9NY46 RNU1-109P-201ENST00000383960 147 ntBASIC1.9□□□□□ -2.11
SCN3AQ9NY46 U3.37-201ENST00000408528 213 ntBASIC1.9□□□□□ -2.11
SCN3AQ9NY46 AC092638.1-201ENST00000411966 1275 ntBASIC1.9□□□□□ -2.11
SCN3AQ9NY46 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC1.9□□□□□ -2.11
SCN3AQ9NY46 AC097499.1-201ENST00000444277 208 ntBASIC1.9□□□□□ -2.11
SCN3AQ9NY46 TTTY19-201ENST00000453955 269 ntTSL 1 (best) BASIC1.9□□□□□ -2.11
SCN3AQ9NY46 snoU13.3-201ENST00000459441 104 ntBASIC1.9□□□□□ -2.11
SCN3AQ9NY46 RBM43P1-201ENST00000476891 1081 ntBASIC1.9□□□□□ -2.11
SCN3AQ9NY46 CFAP44-AS1-202ENST00000498480 686 ntTSL 3 BASIC1.9□□□□□ -2.11
SCN3AQ9NY46 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC1.9□□□□□ -2.11
SCN3AQ9NY46 HMGN1P28-201ENST00000521340 364 ntBASIC1.9□□□□□ -2.11
SCN3AQ9NY46 C8orf22-204ENST00000522267 739 ntAPPRIS ALT1 TSL 2 BASIC1.9□□□□□ -2.11
SCN3AQ9NY46 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC1.9□□□□□ -2.11
SCN3AQ9NY46 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC1.9□□□□□ -2.11
SCN3AQ9NY46 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC1.9□□□□□ -2.11
SCN3AQ9NY46 STARD13-AS-208ENST00000589472 859 ntTSL 5 BASIC1.9□□□□□ -2.11
SCN3AQ9NY46 VN1R78P-201ENST00000597393 564 ntBASIC1.9□□□□□ -2.11
SCN3AQ9NY46 RPP40P2-201ENST00000603596 712 ntBASIC1.9□□□□□ -2.11
SCN3AQ9NY46 AC110792.4-201ENST00000609843 298 ntBASIC1.9□□□□□ -2.11
SCN3AQ9NY46 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC1.9□□□□□ -2.11
SCN3AQ9NY46 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC1.9□□□□□ -2.11
SCN3AQ9NY46 YWHAEP7-203ENST00000622054 312 ntBASIC1.9□□□□□ -2.11
SCN3AQ9NY46 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC1.9□□□□□ -2.11
SCN3AQ9NY46 FO624990.1-201ENST00000636373 85 ntBASIC1.9□□□□□ -2.11
SCN3AQ9NY46 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC1.9□□□□□ -2.11
SCN3AQ9NY46 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC1.89□□□□□ -2.11
SCN3AQ9NY46 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC1.89□□□□□ -2.11
SCN3AQ9NY46 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
SCN3AQ9NY46 SNORA80E-201ENST00000384744 137 ntBASIC1.89□□□□□ -2.11
SCN3AQ9NY46 AC099677.1-201ENST00000420575 175 ntBASIC1.89□□□□□ -2.11
SCN3AQ9NY46 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC1.89□□□□□ -2.11
SCN3AQ9NY46 Z99714.1-201ENST00000450463 807 ntBASIC1.89□□□□□ -2.11
SCN3AQ9NY46 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC1.89□□□□□ -2.11
SCN3AQ9NY46 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC1.89□□□□□ -2.11
SCN3AQ9NY46 HMGB1P47-201ENST00000511281 589 ntBASIC1.89□□□□□ -2.11
SCN3AQ9NY46 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC1.89□□□□□ -2.11
SCN3AQ9NY46 AC027031.1-201ENST00000517318 489 ntTSL 3 BASIC1.89□□□□□ -2.11
SCN3AQ9NY46 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC1.89□□□□□ -2.11
SCN3AQ9NY46 AKIRIN1P1-201ENST00000547384 544 ntBASIC1.89□□□□□ -2.11
SCN3AQ9NY46 AL158801.3-201ENST00000555514 363 ntTSL 3 BASIC1.89□□□□□ -2.11
SCN3AQ9NY46 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC1.89□□□□□ -2.11
SCN3AQ9NY46 KATNBL1P1-201ENST00000605192 748 ntBASIC1.89□□□□□ -2.11
SCN3AQ9NY46 AC120053.1-201ENST00000607706 736 ntBASIC1.89□□□□□ -2.11
SCN3AQ9NY46 AC092954.1-201ENST00000609121 445 ntBASIC1.89□□□□□ -2.11
SCN3AQ9NY46 UBE2Q2P2-203ENST00000613592 761 ntBASIC1.89□□□□□ -2.11
SCN3AQ9NY46 AC018755.4-201ENST00000619715 454 ntBASIC1.89□□□□□ -2.11
SCN3AQ9NY46 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
SCN3AQ9NY46 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC1.89□□□□□ -2.11
SCN3AQ9NY46 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC1.89□□□□□ -2.11
SCN3AQ9NY46 MTND4P35-201ENST00000604257 1375 ntBASIC1.89□□□□□ -2.11
SCN3AQ9NY46 STATH-201ENST00000246895 598 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
SCN3AQ9NY46 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
SCN3AQ9NY46 ATP5F1P6-201ENST00000402768 767 ntBASIC1.88□□□□□ -2.11
SCN3AQ9NY46 RNA5SP38-201ENST00000410750 119 ntBASIC1.88□□□□□ -2.11
SCN3AQ9NY46 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC1.88□□□□□ -2.11
SCN3AQ9NY46 AC233728.2-201ENST00000425348 757 ntBASIC1.88□□□□□ -2.11
SCN3AQ9NY46 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
SCN3AQ9NY46 AC003989.2-201ENST00000440224 169 ntBASIC1.88□□□□□ -2.11
SCN3AQ9NY46 TPTE2P6-202ENST00000445572 1007 ntBASIC1.88□□□□□ -2.11
SCN3AQ9NY46 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC1.88□□□□□ -2.11
SCN3AQ9NY46 AC006148.2-201ENST00000467017 650 ntTSL 2 BASIC1.88□□□□□ -2.11
SCN3AQ9NY46 RPL30P14-201ENST00000482744 348 ntBASIC1.88□□□□□ -2.11
SCN3AQ9NY46 RNF138P1-201ENST00000502765 546 ntBASIC1.88□□□□□ -2.11
SCN3AQ9NY46 RNA5SP82-201ENST00000516707 92 ntBASIC1.88□□□□□ -2.11
SCN3AQ9NY46 HSPE1P20-201ENST00000538133 289 ntBASIC1.88□□□□□ -2.11
SCN3AQ9NY46 MIR4446-201ENST00000578505 67 ntBASIC1.88□□□□□ -2.11
SCN3AQ9NY46 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC1.88□□□□□ -2.11
SCN3AQ9NY46 AC079610.2-201ENST00000604818 690 ntBASIC1.88□□□□□ -2.11
SCN3AQ9NY46 AC008083.4-201ENST00000615076 444 ntBASIC1.88□□□□□ -2.11
SCN3AQ9NY46 AC026634.1-201ENST00000634369 198 ntBASIC1.88□□□□□ -2.11
SCN3AQ9NY46 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC1.88□□□□□ -2.11
SCN3AQ9NY46 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
SCN3AQ9NY46 MIRLET7G-201ENST00000362280 84 ntBASIC1.88□□□□□ -2.11
SCN3AQ9NY46 RNU6-263P-201ENST00000363811 107 ntBASIC1.88□□□□□ -2.11
SCN3AQ9NY46 DEFB127-201ENST00000382388 514 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
SCN3AQ9NY46 RNU4-74P-201ENST00000411280 161 ntBASIC1.88□□□□□ -2.11
SCN3AQ9NY46 AL445646.1-201ENST00000431784 216 ntBASIC1.88□□□□□ -2.11
SCN3AQ9NY46 RPL7P29-201ENST00000437151 728 ntBASIC1.88□□□□□ -2.11
SCN3AQ9NY46 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC1.88□□□□□ -2.11
SCN3AQ9NY46 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC1.88□□□□□ -2.11
SCN3AQ9NY46 AL590664.1-201ENST00000448065 339 ntBASIC1.88□□□□□ -2.11
SCN3AQ9NY46 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC1.88□□□□□ -2.11
SCN3AQ9NY46 AC096992.1-201ENST00000459808 709 ntBASIC1.88□□□□□ -2.11
SCN3AQ9NY46 AC010285.1-201ENST00000470580 392 ntBASIC1.88□□□□□ -2.11
SCN3AQ9NY46 AC009901.1-201ENST00000506703 541 ntBASIC1.88□□□□□ -2.11
SCN3AQ9NY46 AC012625.1-201ENST00000515153 625 ntTSL 5 BASIC1.88□□□□□ -2.11
SCN3AQ9NY46 SNORA31.13-201ENST00000516624 135 ntBASIC1.88□□□□□ -2.11
SCN3AQ9NY46 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC1.88□□□□□ -2.11
SCN3AQ9NY46 PKIA-AS1-203ENST00000522807 692 ntTSL 3 BASIC1.88□□□□□ -2.11
SCN3AQ9NY46 AC004923.2-201ENST00000529649 369 ntBASIC1.88□□□□□ -2.11
SCN3AQ9NY46 AC084033.1-201ENST00000550830 633 ntBASIC1.88□□□□□ -2.11
SCN3AQ9NY46 SETP2-201ENST00000553886 926 ntBASIC1.88□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 103.9 ms