Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AL353748.2-201ENST00000622148 471 ntBASIC3.17□□□□□ -1.9
NKX3-1Q99801 AC092628.2-201ENST00000622492 339 ntBASIC3.17□□□□□ -1.9
NKX3-1Q99801 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC3.17□□□□□ -1.9
NKX3-1Q99801 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
NKX3-1Q99801 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
NKX3-1Q99801 AC020637.1-201ENST00000546977 1447 ntTSL 5 BASIC3.17□□□□□ -1.9
NKX3-1Q99801 AL157700.1-201ENST00000561973 1432 ntBASIC3.17□□□□□ -1.9
NKX3-1Q99801 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.17□□□□□ -1.9
NKX3-1Q99801 AL645937.1-201ENST00000641739 1652 ntBASIC3.17□□□□□ -1.9
NKX3-1Q99801 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC3.17□□□□□ -1.9
NKX3-1Q99801 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
NKX3-1Q99801 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC3.16□□□□□ -1.9
NKX3-1Q99801 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC3.16□□□□□ -1.9
NKX3-1Q99801 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
NKX3-1Q99801 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC3.16□□□□□ -1.9
NKX3-1Q99801 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
NKX3-1Q99801 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.16□□□□□ -1.9
NKX3-1Q99801 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
NKX3-1Q99801 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC3.16□□□□□ -1.9
NKX3-1Q99801 Y_RNA.46-201ENST00000362695 102 ntBASIC3.16□□□□□ -1.9
NKX3-1Q99801 RNU6-1155P-201ENST00000363554 107 ntBASIC3.16□□□□□ -1.9
NKX3-1Q99801 RNU6-359P-201ENST00000365466 108 ntBASIC3.16□□□□□ -1.9
NKX3-1Q99801 RNU6-533P-201ENST00000384144 107 ntBASIC3.16□□□□□ -1.9
NKX3-1Q99801 RNY3P10-201ENST00000384764 102 ntBASIC3.16□□□□□ -1.9
NKX3-1Q99801 RNA5SP424-201ENST00000390988 115 ntBASIC3.16□□□□□ -1.9
NKX3-1Q99801 RPL32P23-201ENST00000397237 405 ntBASIC3.16□□□□□ -1.9
NKX3-1Q99801 RN7SKP159-201ENST00000410657 292 ntBASIC3.16□□□□□ -1.9
NKX3-1Q99801 AL359704.1-201ENST00000411586 781 ntBASIC3.16□□□□□ -1.9
NKX3-1Q99801 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC3.16□□□□□ -1.9
NKX3-1Q99801 AL356583.2-201ENST00000426536 280 ntBASIC3.16□□□□□ -1.9
NKX3-1Q99801 OR4K11P-201ENST00000431829 904 ntBASIC3.16□□□□□ -1.9
NKX3-1Q99801 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC3.16□□□□□ -1.9
NKX3-1Q99801 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC3.16□□□□□ -1.9
NKX3-1Q99801 AC112653.1-201ENST00000443851 386 ntBASIC3.16□□□□□ -1.9
NKX3-1Q99801 HMGB3P8-201ENST00000449709 577 ntBASIC3.16□□□□□ -1.9
NKX3-1Q99801 AL590365.1-201ENST00000450788 243 ntBASIC3.16□□□□□ -1.9
NKX3-1Q99801 AC007967.1-201ENST00000455422 1159 ntBASIC3.16□□□□□ -1.9
NKX3-1Q99801 RN7SL330P-201ENST00000469709 307 ntBASIC3.16□□□□□ -1.9
NKX3-1Q99801 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
NKX3-1Q99801 AC034222.1-201ENST00000494052 532 ntBASIC3.16□□□□□ -1.9
NKX3-1Q99801 AC010424.1-201ENST00000506336 297 ntBASIC3.16□□□□□ -1.9
NKX3-1Q99801 IL7R-208ENST00000511982 612 ntTSL 2 BASIC3.16□□□□□ -1.9
NKX3-1Q99801 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC3.16□□□□□ -1.9
NKX3-1Q99801 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC3.16□□□□□ -1.9
NKX3-1Q99801 AC022447.1-201ENST00000515358 464 ntBASIC3.16□□□□□ -1.9
NKX3-1Q99801 RNU6-528P-201ENST00000516926 100 ntBASIC3.16□□□□□ -1.9
NKX3-1Q99801 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC3.16□□□□□ -1.9
NKX3-1Q99801 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC3.16□□□□□ -1.9
NKX3-1Q99801 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC3.16□□□□□ -1.9
NKX3-1Q99801 AC022146.1-201ENST00000595307 847 ntBASIC3.16□□□□□ -1.9
NKX3-1Q99801 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC3.16□□□□□ -1.9
NKX3-1Q99801 AC068276.1-201ENST00000605793 379 ntBASIC3.16□□□□□ -1.9
NKX3-1Q99801 AC064807.4-201ENST00000607201 407 ntBASIC3.16□□□□□ -1.9
NKX3-1Q99801 MIR92B-201ENST00000607575 96 ntBASIC3.16□□□□□ -1.9
NKX3-1Q99801 AL354798.1-201ENST00000622505 329 ntBASIC3.16□□□□□ -1.9
NKX3-1Q99801 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.16□□□□□ -1.9
NKX3-1Q99801 AP001148.1-201ENST00000624124 2359 ntBASIC3.16□□□□□ -1.9
NKX3-1Q99801 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
NKX3-1Q99801 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.15□□□□□ -1.9
NKX3-1Q99801 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.15□□□□□ -1.9
NKX3-1Q99801 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
NKX3-1Q99801 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC3.15□□□□□ -1.91
NKX3-1Q99801 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
NKX3-1Q99801 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
NKX3-1Q99801 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC3.15□□□□□ -1.91
NKX3-1Q99801 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC3.15□□□□□ -1.91
NKX3-1Q99801 Y_RNA.553-201ENST00000384670 102 ntBASIC3.15□□□□□ -1.91
NKX3-1Q99801 MIR30B-201ENST00000384850 88 ntBASIC3.15□□□□□ -1.91
NKX3-1Q99801 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC3.15□□□□□ -1.91
NKX3-1Q99801 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC3.15□□□□□ -1.91
NKX3-1Q99801 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC3.15□□□□□ -1.91
NKX3-1Q99801 USP9YP29-201ENST00000445112 563 ntBASIC3.15□□□□□ -1.91
NKX3-1Q99801 AC006480.1-201ENST00000449887 378 ntBASIC3.15□□□□□ -1.91
NKX3-1Q99801 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC3.15□□□□□ -1.91
NKX3-1Q99801 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC3.15□□□□□ -1.91
NKX3-1Q99801 snoU13.24-201ENST00000458998 104 ntBASIC3.15□□□□□ -1.91
NKX3-1Q99801 RPL23AP14-201ENST00000468281 468 ntBASIC3.15□□□□□ -1.91
NKX3-1Q99801 SNRPGP3-201ENST00000469405 227 ntBASIC3.15□□□□□ -1.91
NKX3-1Q99801 AC020893.1-201ENST00000502452 580 ntBASIC3.15□□□□□ -1.91
NKX3-1Q99801 AC096751.1-202ENST00000502691 1067 ntBASIC3.15□□□□□ -1.91
NKX3-1Q99801 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC3.15□□□□□ -1.91
NKX3-1Q99801 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.91
NKX3-1Q99801 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC3.15□□□□□ -1.91
NKX3-1Q99801 OR5D17P-201ENST00000531492 978 ntBASIC3.15□□□□□ -1.91
NKX3-1Q99801 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC3.15□□□□□ -1.91
NKX3-1Q99801 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC3.15□□□□□ -1.91
NKX3-1Q99801 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC3.15□□□□□ -1.91
NKX3-1Q99801 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC3.15□□□□□ -1.91
NKX3-1Q99801 ZNF519P3-201ENST00000557158 1032 ntBASIC3.15□□□□□ -1.91
NKX3-1Q99801 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC3.15□□□□□ -1.91
NKX3-1Q99801 AC006960.3-201ENST00000561845 705 ntBASIC3.15□□□□□ -1.91
NKX3-1Q99801 AC006362.1-201ENST00000567392 174 ntBASIC3.15□□□□□ -1.91
NKX3-1Q99801 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC3.15□□□□□ -1.91
NKX3-1Q99801 AC060771.1-201ENST00000582031 164 ntBASIC3.15□□□□□ -1.91
NKX3-1Q99801 AC006130.2-201ENST00000586202 326 ntBASIC3.15□□□□□ -1.91
NKX3-1Q99801 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC3.15□□□□□ -1.91
NKX3-1Q99801 AC040904.1-201ENST00000590850 223 ntBASIC3.15□□□□□ -1.91
NKX3-1Q99801 TPMTP1-201ENST00000592307 737 ntBASIC3.15□□□□□ -1.91
NKX3-1Q99801 AC103710.3-201ENST00000608157 948 ntBASIC3.15□□□□□ -1.91
NKX3-1Q99801 AC025594.3-201ENST00000613068 790 ntBASIC3.15□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 100.8 ms