Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 ANKRD10-IT1-201ENST00000426991 800 ntTSL 2 BASIC3.44□□□□□ -1.86
CCDC43Q96MW1 TRIAP1P1-201ENST00000427062 225 ntBASIC3.44□□□□□ -1.86
CCDC43Q96MW1 NDUFB4P6-201ENST00000436819 366 ntBASIC3.44□□□□□ -1.86
CCDC43Q96MW1 RPL26P6-201ENST00000440913 438 ntBASIC3.44□□□□□ -1.86
CCDC43Q96MW1 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC3.44□□□□□ -1.86
CCDC43Q96MW1 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC3.44□□□□□ -1.86
CCDC43Q96MW1 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC3.44□□□□□ -1.86
CCDC43Q96MW1 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
CCDC43Q96MW1 RN7SL75P-201ENST00000461926 281 ntBASIC3.44□□□□□ -1.86
CCDC43Q96MW1 RPL21P8-201ENST00000465083 535 ntBASIC3.44□□□□□ -1.86
CCDC43Q96MW1 RN7SL283P-201ENST00000489055 303 ntBASIC3.44□□□□□ -1.86
CCDC43Q96MW1 RPL7P23-201ENST00000493874 747 ntBASIC3.44□□□□□ -1.86
CCDC43Q96MW1 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
CCDC43Q96MW1 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC3.44□□□□□ -1.86
CCDC43Q96MW1 AL359273.1-201ENST00000510918 627 ntBASIC3.44□□□□□ -1.86
CCDC43Q96MW1 AC006499.2-201ENST00000513470 337 ntBASIC3.44□□□□□ -1.86
CCDC43Q96MW1 AC087439.2-201ENST00000519498 552 ntTSL 3 BASIC3.44□□□□□ -1.86
CCDC43Q96MW1 CD69-203ENST00000536709 1020 ntTSL 2 BASIC3.44□□□□□ -1.86
CCDC43Q96MW1 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC3.44□□□□□ -1.86
CCDC43Q96MW1 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC3.44□□□□□ -1.86
CCDC43Q96MW1 AC018371.1-201ENST00000584560 640 ntTSL 3 BASIC3.44□□□□□ -1.86
CCDC43Q96MW1 AC105224.1-201ENST00000587055 421 ntBASIC3.44□□□□□ -1.86
CCDC43Q96MW1 AL451074.6-201ENST00000608512 729 ntBASIC3.44□□□□□ -1.86
CCDC43Q96MW1 AL121652.1-201ENST00000608851 448 ntBASIC3.44□□□□□ -1.86
CCDC43Q96MW1 AL450472.3-201ENST00000615578 367 ntBASIC3.44□□□□□ -1.86
CCDC43Q96MW1 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC3.44□□□□□ -1.86
CCDC43Q96MW1 AC090772.4-201ENST00000623599 362 ntBASIC3.44□□□□□ -1.86
CCDC43Q96MW1 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC3.44□□□□□ -1.86
CCDC43Q96MW1 MIR622-201ENST00000638396 96 ntBASIC3.44□□□□□ -1.86
CCDC43Q96MW1 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC3.44□□□□□ -1.86
CCDC43Q96MW1 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
CCDC43Q96MW1 AL022578.1-201ENST00000439330 1433 ntBASIC3.44□□□□□ -1.86
CCDC43Q96MW1 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
CCDC43Q96MW1 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
CCDC43Q96MW1 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.43□□□□□ -1.86
CCDC43Q96MW1 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
CCDC43Q96MW1 GNG5P1-201ENST00000255500 204 ntBASIC3.43□□□□□ -1.86
CCDC43Q96MW1 RPL23AP57-201ENST00000332361 466 ntBASIC3.43□□□□□ -1.86
CCDC43Q96MW1 MIR22-201ENST00000362190 85 ntBASIC3.43□□□□□ -1.86
CCDC43Q96MW1 SNORA71.1-201ENST00000364523 117 ntBASIC3.43□□□□□ -1.86
CCDC43Q96MW1 RNU6-952P-201ENST00000391164 108 ntBASIC3.43□□□□□ -1.86
CCDC43Q96MW1 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.43□□□□□ -1.86
CCDC43Q96MW1 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC3.43□□□□□ -1.86
CCDC43Q96MW1 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC3.43□□□□□ -1.86
CCDC43Q96MW1 TIMM9P2-201ENST00000419324 266 ntBASIC3.43□□□□□ -1.86
CCDC43Q96MW1 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC3.43□□□□□ -1.86
CCDC43Q96MW1 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC3.43□□□□□ -1.86
CCDC43Q96MW1 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC3.43□□□□□ -1.86
CCDC43Q96MW1 AC092573.2-201ENST00000434546 243 ntBASIC3.43□□□□□ -1.86
CCDC43Q96MW1 CYCSP32-201ENST00000440548 321 ntBASIC3.43□□□□□ -1.86
CCDC43Q96MW1 AL050303.1-201ENST00000444356 458 ntTSL 2 BASIC3.43□□□□□ -1.86
CCDC43Q96MW1 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC3.43□□□□□ -1.86
CCDC43Q96MW1 MAST4-AS1-201ENST00000451496 777 ntTSL 2 BASIC3.43□□□□□ -1.86
CCDC43Q96MW1 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC3.43□□□□□ -1.86
CCDC43Q96MW1 MTATP6P14-201ENST00000455189 673 ntBASIC3.43□□□□□ -1.86
CCDC43Q96MW1 RNU7-136P-201ENST00000458819 69 ntBASIC3.43□□□□□ -1.86
CCDC43Q96MW1 AL049714.1-201ENST00000466686 347 ntBASIC3.43□□□□□ -1.86
CCDC43Q96MW1 RPL27AP5-201ENST00000469428 449 ntBASIC3.43□□□□□ -1.86
CCDC43Q96MW1 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
CCDC43Q96MW1 RPL21P131-201ENST00000497298 483 ntBASIC3.43□□□□□ -1.86
CCDC43Q96MW1 AC111000.2-201ENST00000507775 550 ntBASIC3.43□□□□□ -1.86
CCDC43Q96MW1 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC3.43□□□□□ -1.86
CCDC43Q96MW1 AC022483.1-201ENST00000514020 567 ntBASIC3.43□□□□□ -1.86
CCDC43Q96MW1 AC009812.2-201ENST00000517657 457 ntBASIC3.43□□□□□ -1.86
CCDC43Q96MW1 SARNP-203ENST00000552080 726 ntTSL 2 BASIC3.43□□□□□ -1.86
CCDC43Q96MW1 AC011260.1-201ENST00000578420 472 ntBASIC3.43□□□□□ -1.86
CCDC43Q96MW1 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC3.43□□□□□ -1.86
CCDC43Q96MW1 MIR4325-201ENST00000583049 90 ntBASIC3.43□□□□□ -1.86
CCDC43Q96MW1 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC3.43□□□□□ -1.86
CCDC43Q96MW1 AP000254.1-201ENST00000609934 520 ntBASIC3.43□□□□□ -1.86
CCDC43Q96MW1 AC091953.5-201ENST00000622919 233 ntBASIC3.43□□□□□ -1.86
CCDC43Q96MW1 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC3.43□□□□□ -1.86
CCDC43Q96MW1 AP001002.2-201ENST00000625137 386 ntBASIC3.43□□□□□ -1.86
CCDC43Q96MW1 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC3.43□□□□□ -1.86
CCDC43Q96MW1 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
CCDC43Q96MW1 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC3.43□□□□□ -1.86
CCDC43Q96MW1 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
CCDC43Q96MW1 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
CCDC43Q96MW1 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.43□□□□□ -1.86
CCDC43Q96MW1 MTND5P24-201ENST00000438892 1767 ntBASIC3.43□□□□□ -1.86
CCDC43Q96MW1 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC3.43□□□□□ -1.86
CCDC43Q96MW1 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
CCDC43Q96MW1 AC012321.1-201ENST00000561622 1588 ntBASIC3.42□□□□□ -1.86
CCDC43Q96MW1 AC008568.2-201ENST00000623862 2313 ntBASIC3.42□□□□□ -1.86
CCDC43Q96MW1 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC3.42□□□□□ -1.86
CCDC43Q96MW1 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
CCDC43Q96MW1 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC3.42□□□□□ -1.86
CCDC43Q96MW1 NACA3P-201ENST00000359690 648 ntBASIC3.42□□□□□ -1.86
CCDC43Q96MW1 RNU6-560P-201ENST00000364007 108 ntBASIC3.42□□□□□ -1.86
CCDC43Q96MW1 RNU6-413P-201ENST00000384115 107 ntBASIC3.42□□□□□ -1.86
CCDC43Q96MW1 SNORA9-201ENST00000384215 133 ntBASIC3.42□□□□□ -1.86
CCDC43Q96MW1 Y_RNA.548-201ENST00000384656 105 ntBASIC3.42□□□□□ -1.86
CCDC43Q96MW1 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC3.42□□□□□ -1.86
CCDC43Q96MW1 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC3.42□□□□□ -1.86
CCDC43Q96MW1 AC012498.1-201ENST00000424037 437 ntBASIC3.42□□□□□ -1.86
CCDC43Q96MW1 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC3.42□□□□□ -1.86
CCDC43Q96MW1 AC004160.1-205ENST00000428967 577 ntTSL 4 BASIC3.42□□□□□ -1.86
CCDC43Q96MW1 MTCO2P25-201ENST00000447065 681 ntBASIC3.42□□□□□ -1.86
CCDC43Q96MW1 AC234775.1-201ENST00000454247 670 ntBASIC3.42□□□□□ -1.86
CCDC43Q96MW1 AC010265.1-201ENST00000513509 211 ntBASIC3.42□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 129 ms