Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 HSPD1P15-201ENST00000505573 1122 ntBASIC4.9□□□□□ -1.63
SMC1BQ8NDV3 AC010587.1-201ENST00000505809 469 ntBASIC4.9□□□□□ -1.63
SMC1BQ8NDV3 AC104619.4-201ENST00000510773 249 ntBASIC4.9□□□□□ -1.63
SMC1BQ8NDV3 AP003497.1-201ENST00000528472 562 ntBASIC4.9□□□□□ -1.63
SMC1BQ8NDV3 OR4P1P-201ENST00000530808 1136 ntBASIC4.9□□□□□ -1.63
SMC1BQ8NDV3 PDCD5P1-201ENST00000543528 309 ntBASIC4.9□□□□□ -1.63
SMC1BQ8NDV3 RPS3AP4-201ENST00000555161 764 ntBASIC4.9□□□□□ -1.63
SMC1BQ8NDV3 MIR4458-201ENST00000578872 75 ntBASIC4.9□□□□□ -1.63
SMC1BQ8NDV3 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC4.9□□□□□ -1.63
SMC1BQ8NDV3 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC4.9□□□□□ -1.63
SMC1BQ8NDV3 AP003117.2-201ENST00000606010 545 ntBASIC4.9□□□□□ -1.63
SMC1BQ8NDV3 AC092954.2-201ENST00000609103 430 ntBASIC4.9□□□□□ -1.63
SMC1BQ8NDV3 AC007014.2-201ENST00000615581 479 ntBASIC4.9□□□□□ -1.63
SMC1BQ8NDV3 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC4.9□□□□□ -1.63
SMC1BQ8NDV3 AC091953.2-201ENST00000623979 160 ntBASIC4.9□□□□□ -1.63
SMC1BQ8NDV3 ABBA01000935.2-201ENST00000637477 838 ntBASIC4.9□□□□□ -1.63
SMC1BQ8NDV3 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC4.9□□□□□ -1.63
SMC1BQ8NDV3 ARHGAP42P3-201ENST00000443989 2508 ntBASIC4.9□□□□□ -1.63
SMC1BQ8NDV3 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
SMC1BQ8NDV3 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC4.9□□□□□ -1.63
SMC1BQ8NDV3 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC4.9□□□□□ -1.63
SMC1BQ8NDV3 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
SMC1BQ8NDV3 AL139811.1-201ENST00000424779 2299 ntBASIC4.89□□□□□ -1.63
SMC1BQ8NDV3 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC4.89□□□□□ -1.63
SMC1BQ8NDV3 AC019155.1-201ENST00000382242 574 ntBASIC4.89□□□□□ -1.63
SMC1BQ8NDV3 Y_RNA.450-201ENST00000384198 113 ntBASIC4.89□□□□□ -1.63
SMC1BQ8NDV3 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
SMC1BQ8NDV3 RNU6-821P-201ENST00000390995 107 ntBASIC4.89□□□□□ -1.63
SMC1BQ8NDV3 MIR1289-1-201ENST00000408836 144 ntBASIC4.89□□□□□ -1.63
SMC1BQ8NDV3 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC4.89□□□□□ -1.63
SMC1BQ8NDV3 AC019097.1-201ENST00000424783 735 ntBASIC4.89□□□□□ -1.63
SMC1BQ8NDV3 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
SMC1BQ8NDV3 AC000111.3-201ENST00000433478 193 ntBASIC4.89□□□□□ -1.63
SMC1BQ8NDV3 ELOCP18-201ENST00000434209 337 ntBASIC4.89□□□□□ -1.63
SMC1BQ8NDV3 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC4.89□□□□□ -1.63
SMC1BQ8NDV3 MTND1P9-201ENST00000453775 944 ntBASIC4.89□□□□□ -1.63
SMC1BQ8NDV3 MTND1P12-201ENST00000455231 147 ntBASIC4.89□□□□□ -1.63
SMC1BQ8NDV3 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC4.89□□□□□ -1.63
SMC1BQ8NDV3 snoU109.4-201ENST00000458953 143 ntBASIC4.89□□□□□ -1.63
SMC1BQ8NDV3 RN7SL601P-201ENST00000471221 293 ntBASIC4.89□□□□□ -1.63
SMC1BQ8NDV3 AC055855.1-201ENST00000489563 579 ntBASIC4.89□□□□□ -1.63
SMC1BQ8NDV3 PRDX4P1-201ENST00000507189 574 ntBASIC4.89□□□□□ -1.63
SMC1BQ8NDV3 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
SMC1BQ8NDV3 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC4.89□□□□□ -1.63
SMC1BQ8NDV3 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC4.89□□□□□ -1.63
SMC1BQ8NDV3 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC4.89□□□□□ -1.63
SMC1BQ8NDV3 AC107954.1-201ENST00000565906 727 ntBASIC4.89□□□□□ -1.63
SMC1BQ8NDV3 AC087499.8-201ENST00000578406 226 ntBASIC4.89□□□□□ -1.63
SMC1BQ8NDV3 MIR3118-1-201ENST00000581787 76 ntBASIC4.89□□□□□ -1.63
SMC1BQ8NDV3 AC091178.1-203ENST00000584586 279 ntBASIC4.89□□□□□ -1.63
SMC1BQ8NDV3 AC011451.2-201ENST00000604303 598 ntBASIC4.89□□□□□ -1.63
SMC1BQ8NDV3 AL049634.3-201ENST00000604968 457 ntBASIC4.89□□□□□ -1.63
SMC1BQ8NDV3 AC105429.2-201ENST00000610567 517 ntBASIC4.89□□□□□ -1.63
SMC1BQ8NDV3 U73479.1-201ENST00000618062 168 ntBASIC4.89□□□□□ -1.63
SMC1BQ8NDV3 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC4.89□□□□□ -1.63
SMC1BQ8NDV3 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC4.89□□□□□ -1.63
SMC1BQ8NDV3 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC4.89□□□□□ -1.63
SMC1BQ8NDV3 AC233263.6-201ENST00000631132 1963 ntBASIC4.89□□□□□ -1.63
SMC1BQ8NDV3 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC4.89□□□□□ -1.63
SMC1BQ8NDV3 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.89□□□□□ -1.63
SMC1BQ8NDV3 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
SMC1BQ8NDV3 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC4.89□□□□□ -1.63
SMC1BQ8NDV3 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC4.89□□□□□ -1.63
SMC1BQ8NDV3 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC4.88□□□□□ -1.63
SMC1BQ8NDV3 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
SMC1BQ8NDV3 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
SMC1BQ8NDV3 AC027287.1-201ENST00000553115 1453 ntBASIC4.88□□□□□ -1.63
SMC1BQ8NDV3 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC4.88□□□□□ -1.63
SMC1BQ8NDV3 AC087190.4-201ENST00000574616 8334 ntBASIC4.88□□□□□ -1.63
SMC1BQ8NDV3 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
SMC1BQ8NDV3 HSP90AA4P-202ENST00000506915 2228 ntBASIC4.88□□□□□ -1.63
SMC1BQ8NDV3 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC4.88□□□□□ -1.63
SMC1BQ8NDV3 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
SMC1BQ8NDV3 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
SMC1BQ8NDV3 PLET1-201ENST00000338832 1215 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
SMC1BQ8NDV3 SNORA60-201ENST00000362396 134 ntBASIC4.88□□□□□ -1.63
SMC1BQ8NDV3 RNU5E-1-201ENST00000362477 120 ntBASIC4.88□□□□□ -1.63
SMC1BQ8NDV3 RNY1P12-201ENST00000364251 105 ntBASIC4.88□□□□□ -1.63
SMC1BQ8NDV3 RNU1-63P-201ENST00000383902 164 ntBASIC4.88□□□□□ -1.63
SMC1BQ8NDV3 MIR1277-201ENST00000408536 78 ntBASIC4.88□□□□□ -1.63
SMC1BQ8NDV3 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC4.88□□□□□ -1.63
SMC1BQ8NDV3 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
SMC1BQ8NDV3 RPL29P29-201ENST00000448725 423 ntBASIC4.88□□□□□ -1.63
SMC1BQ8NDV3 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
SMC1BQ8NDV3 SNORD121B-201ENST00000458838 81 ntBASIC4.88□□□□□ -1.63
SMC1BQ8NDV3 AC023598.1-201ENST00000472521 361 ntBASIC4.88□□□□□ -1.63
SMC1BQ8NDV3 RN7SL429P-201ENST00000479090 223 ntBASIC4.88□□□□□ -1.63
SMC1BQ8NDV3 RN7SL489P-201ENST00000486185 223 ntBASIC4.88□□□□□ -1.63
SMC1BQ8NDV3 RN7SL327P-201ENST00000488659 223 ntBASIC4.88□□□□□ -1.63
SMC1BQ8NDV3 AC023194.1-201ENST00000493084 308 ntBASIC4.88□□□□□ -1.63
SMC1BQ8NDV3 ATP6V1G1P6-201ENST00000504007 334 ntBASIC4.88□□□□□ -1.63
SMC1BQ8NDV3 PGBD4P4-201ENST00000509673 613 ntBASIC4.88□□□□□ -1.63
SMC1BQ8NDV3 AC009646.1-201ENST00000510455 318 ntBASIC4.88□□□□□ -1.63
SMC1BQ8NDV3 ARL2BPP6-201ENST00000512757 439 ntBASIC4.88□□□□□ -1.63
SMC1BQ8NDV3 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC4.88□□□□□ -1.63
SMC1BQ8NDV3 MYL12AP1-201ENST00000518490 515 ntBASIC4.88□□□□□ -1.63
SMC1BQ8NDV3 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC4.88□□□□□ -1.63
SMC1BQ8NDV3 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC4.88□□□□□ -1.63
SMC1BQ8NDV3 AC015912.2-201ENST00000571053 181 ntBASIC4.88□□□□□ -1.63
SMC1BQ8NDV3 UBE2L4-201ENST00000587688 464 ntBASIC4.88□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 81.2 ms