Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AL159987.2-201ENST00000432754 307 ntBASIC3.06□□□□□ -1.92
ZNF540Q8NDQ6 CST9LP2-201ENST00000437612 320 ntBASIC3.06□□□□□ -1.92
ZNF540Q8NDQ6 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC3.06□□□□□ -1.92
ZNF540Q8NDQ6 Z99127.3-201ENST00000448158 395 ntBASIC3.06□□□□□ -1.92
ZNF540Q8NDQ6 AC115115.1-201ENST00000449927 248 ntBASIC3.06□□□□□ -1.92
ZNF540Q8NDQ6 MTND2P24-201ENST00000453434 806 ntBASIC3.06□□□□□ -1.92
ZNF540Q8NDQ6 RNU7-23P-201ENST00000459465 62 ntBASIC3.06□□□□□ -1.92
ZNF540Q8NDQ6 AC087588.1-201ENST00000462203 316 ntBASIC3.06□□□□□ -1.92
ZNF540Q8NDQ6 CNOT10-AS1-201ENST00000475395 466 ntTSL 3 BASIC3.06□□□□□ -1.92
ZNF540Q8NDQ6 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC3.06□□□□□ -1.92
ZNF540Q8NDQ6 SEM1P1-201ENST00000506694 209 ntBASIC3.06□□□□□ -1.92
ZNF540Q8NDQ6 MTND4P9-201ENST00000507819 1346 ntBASIC3.06□□□□□ -1.92
ZNF540Q8NDQ6 AC097480.1-201ENST00000509416 712 ntTSL 3 BASIC3.06□□□□□ -1.92
ZNF540Q8NDQ6 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC3.06□□□□□ -1.92
ZNF540Q8NDQ6 MAL2-206ENST00000522187 547 ntTSL 4 BASIC3.06□□□□□ -1.92
ZNF540Q8NDQ6 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC3.06□□□□□ -1.92
ZNF540Q8NDQ6 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC3.06□□□□□ -1.92
ZNF540Q8NDQ6 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
ZNF540Q8NDQ6 MIR3912-201ENST00000577566 105 ntBASIC3.06□□□□□ -1.92
ZNF540Q8NDQ6 AC008507.2-201ENST00000588402 1176 ntBASIC3.06□□□□□ -1.92
ZNF540Q8NDQ6 AC067852.3-201ENST00000589177 561 ntBASIC3.06□□□□□ -1.92
ZNF540Q8NDQ6 AC245884.10-201ENST00000597355 337 ntBASIC3.06□□□□□ -1.92
ZNF540Q8NDQ6 AC009269.6-201ENST00000621778 588 ntBASIC3.06□□□□□ -1.92
ZNF540Q8NDQ6 AL138955.1-201ENST00000622881 1040 ntBASIC3.06□□□□□ -1.92
ZNF540Q8NDQ6 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
ZNF540Q8NDQ6 AL049641.1-201ENST00000441055 1948 ntBASIC3.05□□□□□ -1.92
ZNF540Q8NDQ6 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC3.05□□□□□ -1.92
ZNF540Q8NDQ6 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC3.05□□□□□ -1.92
ZNF540Q8NDQ6 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC3.05□□□□□ -1.92
ZNF540Q8NDQ6 Y_RNA.578-201ENST00000390903 88 ntBASIC3.05□□□□□ -1.92
ZNF540Q8NDQ6 AL450338.1-201ENST00000407987 512 ntBASIC3.05□□□□□ -1.92
ZNF540Q8NDQ6 AC096533.1-201ENST00000411645 353 ntBASIC3.05□□□□□ -1.92
ZNF540Q8NDQ6 Z85995.1-201ENST00000415547 335 ntBASIC3.05□□□□□ -1.92
ZNF540Q8NDQ6 AL158156.1-201ENST00000422509 473 ntBASIC3.05□□□□□ -1.92
ZNF540Q8NDQ6 RPF2P1-201ENST00000424137 906 ntBASIC3.05□□□□□ -1.92
ZNF540Q8NDQ6 RPL21P2-201ENST00000440049 481 ntBASIC3.05□□□□□ -1.92
ZNF540Q8NDQ6 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC3.05□□□□□ -1.92
ZNF540Q8NDQ6 snoU13.8-201ENST00000458890 104 ntBASIC3.05□□□□□ -1.92
ZNF540Q8NDQ6 AC016550.1-201ENST00000505348 785 ntBASIC3.05□□□□□ -1.92
ZNF540Q8NDQ6 AC114322.1-201ENST00000506771 926 ntBASIC3.05□□□□□ -1.92
ZNF540Q8NDQ6 CTD-2350J17.1-201ENST00000509228 362 ntTSL 2 BASIC3.05□□□□□ -1.92
ZNF540Q8NDQ6 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC3.05□□□□□ -1.92
ZNF540Q8NDQ6 OR5BM1P-201ENST00000512021 366 ntBASIC3.05□□□□□ -1.92
ZNF540Q8NDQ6 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC3.05□□□□□ -1.92
ZNF540Q8NDQ6 MTATP6P9-201ENST00000515039 680 ntBASIC3.05□□□□□ -1.92
ZNF540Q8NDQ6 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC3.05□□□□□ -1.92
ZNF540Q8NDQ6 AC093535.1-201ENST00000515808 747 ntTSL 3 BASIC3.05□□□□□ -1.92
ZNF540Q8NDQ6 RNU6-415P-201ENST00000516252 97 ntBASIC3.05□□□□□ -1.92
ZNF540Q8NDQ6 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC3.05□□□□□ -1.92
ZNF540Q8NDQ6 AC007991.1-201ENST00000522680 631 ntBASIC3.05□□□□□ -1.92
ZNF540Q8NDQ6 AP001372.4-201ENST00000524889 472 ntBASIC3.05□□□□□ -1.92
ZNF540Q8NDQ6 AP003181.1-201ENST00000528811 445 ntTSL 3 BASIC3.05□□□□□ -1.92
ZNF540Q8NDQ6 AP003066.2-201ENST00000529375 555 ntBASIC3.05□□□□□ -1.92
ZNF540Q8NDQ6 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC3.05□□□□□ -1.92
ZNF540Q8NDQ6 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC3.05□□□□□ -1.92
ZNF540Q8NDQ6 SLC2A13P1-201ENST00000531560 322 ntBASIC3.05□□□□□ -1.92
ZNF540Q8NDQ6 LRRC37A5P-202ENST00000536054 1095 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
ZNF540Q8NDQ6 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
ZNF540Q8NDQ6 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
ZNF540Q8NDQ6 SETP2-201ENST00000553886 926 ntBASIC3.05□□□□□ -1.92
ZNF540Q8NDQ6 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
ZNF540Q8NDQ6 NCAPGP2-201ENST00000557911 754 ntBASIC3.05□□□□□ -1.92
ZNF540Q8NDQ6 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC3.05□□□□□ -1.92
ZNF540Q8NDQ6 AC104072.1-201ENST00000568817 668 ntBASIC3.05□□□□□ -1.92
ZNF540Q8NDQ6 MIR5186-201ENST00000577504 120 ntBASIC3.05□□□□□ -1.92
ZNF540Q8NDQ6 AC134669.2-201ENST00000578584 1008 ntAPPRIS P1 TSL 2 BASIC3.05□□□□□ -1.92
ZNF540Q8NDQ6 MIR5195-201ENST00000583555 115 ntBASIC3.05□□□□□ -1.92
ZNF540Q8NDQ6 AC018371.1-201ENST00000584560 640 ntTSL 3 BASIC3.05□□□□□ -1.92
ZNF540Q8NDQ6 MIR4506-201ENST00000584693 77 ntBASIC3.05□□□□□ -1.92
ZNF540Q8NDQ6 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC3.05□□□□□ -1.92
ZNF540Q8NDQ6 AP001429.1-201ENST00000602568 530 ntBASIC3.05□□□□□ -1.92
ZNF540Q8NDQ6 AL391001.1-201ENST00000602747 715 ntBASIC3.05□□□□□ -1.92
ZNF540Q8NDQ6 AL137843.1-201ENST00000605078 385 ntBASIC3.05□□□□□ -1.92
ZNF540Q8NDQ6 AF129408.1-201ENST00000608767 431 ntBASIC3.05□□□□□ -1.92
ZNF540Q8NDQ6 AC018645.2-201ENST00000609151 472 ntBASIC3.05□□□□□ -1.92
ZNF540Q8NDQ6 AC090132.2-201ENST00000615881 347 ntBASIC3.05□□□□□ -1.92
ZNF540Q8NDQ6 AL355365.1-201ENST00000616480 294 ntBASIC3.05□□□□□ -1.92
ZNF540Q8NDQ6 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC3.05□□□□□ -1.92
ZNF540Q8NDQ6 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.05□□□□□ -1.92
ZNF540Q8NDQ6 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.05□□□□□ -1.92
ZNF540Q8NDQ6 AP005901.5-201ENST00000545779 1796 ntBASIC3.05□□□□□ -1.92
ZNF540Q8NDQ6 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC3.04□□□□□ -1.92
ZNF540Q8NDQ6 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
ZNF540Q8NDQ6 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
ZNF540Q8NDQ6 SNORD9-201ENST00000362566 104 ntBASIC3.04□□□□□ -1.92
ZNF540Q8NDQ6 MIR491-201ENST00000384877 84 ntBASIC3.04□□□□□ -1.92
ZNF540Q8NDQ6 MIR627-201ENST00000384979 97 ntBASIC3.04□□□□□ -1.92
ZNF540Q8NDQ6 MIR514A1-201ENST00000385133 98 ntBASIC3.04□□□□□ -1.92
ZNF540Q8NDQ6 MIR620-201ENST00000385232 95 ntBASIC3.04□□□□□ -1.92
ZNF540Q8NDQ6 ZNF365-203ENST00000395249 433 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
ZNF540Q8NDQ6 AL031679.1-201ENST00000400616 525 ntBASIC3.04□□□□□ -1.92
ZNF540Q8NDQ6 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.04□□□□□ -1.92
ZNF540Q8NDQ6 RNU2-42P-201ENST00000410697 113 ntBASIC3.04□□□□□ -1.92
ZNF540Q8NDQ6 MRPS36P1-201ENST00000421291 307 ntBASIC3.04□□□□□ -1.92
ZNF540Q8NDQ6 PTP4A1P7-201ENST00000423476 514 ntBASIC3.04□□□□□ -1.92
ZNF540Q8NDQ6 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.04□□□□□ -1.92
ZNF540Q8NDQ6 AL365496.1-201ENST00000426885 215 ntBASIC3.04□□□□□ -1.92
ZNF540Q8NDQ6 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC3.04□□□□□ -1.92
ZNF540Q8NDQ6 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC3.04□□□□□ -1.92
ZNF540Q8NDQ6 ARPC3P5-201ENST00000448802 534 ntBASIC3.04□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 95.5 ms