Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 SNORD65.1-201ENST00000390889 71 ntBASIC2.73□□□□□ -1.97
RFX3P48380 MIR887-201ENST00000401258 79 ntBASIC2.73□□□□□ -1.97
RFX3P48380 SNORD88.1-201ENST00000408684 91 ntBASIC2.73□□□□□ -1.97
RFX3P48380 MIR1289-1-201ENST00000408836 144 ntBASIC2.73□□□□□ -1.97
RFX3P48380 RN7SKP220-201ENST00000410611 288 ntBASIC2.73□□□□□ -1.97
RFX3P48380 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC2.73□□□□□ -1.97
RFX3P48380 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
RFX3P48380 AC023469.2-201ENST00000425983 657 ntTSL 5 BASIC2.73□□□□□ -1.97
RFX3P48380 GTF2IP7-202ENST00000436677 309 ntBASIC2.73□□□□□ -1.97
RFX3P48380 NDUFB4P6-201ENST00000436819 366 ntBASIC2.73□□□□□ -1.97
RFX3P48380 YWHAZP7-201ENST00000436906 631 ntBASIC2.73□□□□□ -1.97
RFX3P48380 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC2.73□□□□□ -1.97
RFX3P48380 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC2.73□□□□□ -1.97
RFX3P48380 MTCYBP11-201ENST00000447254 1109 ntBASIC2.73□□□□□ -1.97
RFX3P48380 SNRPGP6-201ENST00000451124 220 ntBASIC2.73□□□□□ -1.97
RFX3P48380 TEX41-209ENST00000451478 452 ntTSL 2 BASIC2.73□□□□□ -1.97
RFX3P48380 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
RFX3P48380 RPL31P60-201ENST00000478450 367 ntBASIC2.73□□□□□ -1.97
RFX3P48380 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC2.73□□□□□ -1.97
RFX3P48380 AC006445.2-201ENST00000510061 472 ntBASIC2.73□□□□□ -1.97
RFX3P48380 C1GALT1P2-201ENST00000510813 1104 ntBASIC2.73□□□□□ -1.97
RFX3P48380 RNA5SP76-201ENST00000516277 87 ntBASIC2.73□□□□□ -1.97
RFX3P48380 RNU6-56P-201ENST00000516986 93 ntBASIC2.73□□□□□ -1.97
RFX3P48380 AC104986.1-201ENST00000517978 436 ntBASIC2.73□□□□□ -1.97
RFX3P48380 AP003102.1-201ENST00000525638 661 ntBASIC2.73□□□□□ -1.97
RFX3P48380 CASP1P1-201ENST00000526345 212 ntBASIC2.73□□□□□ -1.97
RFX3P48380 LRRC6P1-201ENST00000532188 885 ntBASIC2.73□□□□□ -1.97
RFX3P48380 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC2.73□□□□□ -1.97
RFX3P48380 AC138915.2-201ENST00000569776 97 ntBASIC2.73□□□□□ -1.97
RFX3P48380 AC015688.2-201ENST00000584523 262 ntBASIC2.73□□□□□ -1.97
RFX3P48380 BNIP3P24-201ENST00000593398 557 ntBASIC2.73□□□□□ -1.97
RFX3P48380 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC2.73□□□□□ -1.97
RFX3P48380 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC2.73□□□□□ -1.97
RFX3P48380 AC013444.2-201ENST00000603317 787 ntBASIC2.73□□□□□ -1.97
RFX3P48380 AC097504.2-201ENST00000608088 454 ntBASIC2.73□□□□□ -1.97
RFX3P48380 AC018645.2-201ENST00000609151 472 ntBASIC2.73□□□□□ -1.97
RFX3P48380 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC2.73□□□□□ -1.97
RFX3P48380 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC2.73□□□□□ -1.97
RFX3P48380 AC091564.4-201ENST00000533934 2194 ntBASIC2.73□□□□□ -1.97
RFX3P48380 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC2.73□□□□□ -1.97
RFX3P48380 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
RFX3P48380 GNG5P1-201ENST00000255500 204 ntBASIC2.72□□□□□ -1.97
RFX3P48380 Y_RNA.25-201ENST00000362528 102 ntBASIC2.72□□□□□ -1.97
RFX3P48380 Y_RNA.578-201ENST00000390903 88 ntBASIC2.72□□□□□ -1.97
RFX3P48380 ATG3P1-201ENST00000419507 911 ntBASIC2.72□□□□□ -1.97
RFX3P48380 AC007742.1-201ENST00000425789 329 ntBASIC2.72□□□□□ -1.97
RFX3P48380 AC024082.2-201ENST00000434771 238 ntBASIC2.72□□□□□ -1.97
RFX3P48380 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
RFX3P48380 ELOCP26-201ENST00000436067 329 ntBASIC2.72□□□□□ -1.97
RFX3P48380 MUPP-201ENST00000438111 566 ntBASIC2.72□□□□□ -1.97
RFX3P48380 LSM1P1-201ENST00000438629 273 ntBASIC2.72□□□□□ -1.97
RFX3P48380 USP9YP22-201ENST00000438971 294 ntBASIC2.72□□□□□ -1.97
RFX3P48380 RPL37P4-201ENST00000448908 268 ntBASIC2.72□□□□□ -1.97
RFX3P48380 AL162389.1-201ENST00000449233 177 ntBASIC2.72□□□□□ -1.97
RFX3P48380 AC005297.2-201ENST00000450430 606 ntBASIC2.72□□□□□ -1.97
RFX3P48380 AC079776.3-201ENST00000450665 370 ntBASIC2.72□□□□□ -1.97
RFX3P48380 GSTA11P-201ENST00000452866 669 ntBASIC2.72□□□□□ -1.97
RFX3P48380 AC010099.1-201ENST00000455434 375 ntBASIC2.72□□□□□ -1.97
RFX3P48380 AL590639.1-201ENST00000456484 337 ntBASIC2.72□□□□□ -1.97
RFX3P48380 RPS29P12-201ENST00000460178 152 ntBASIC2.72□□□□□ -1.97
RFX3P48380 SETP11-201ENST00000473027 690 ntBASIC2.72□□□□□ -1.97
RFX3P48380 AC069528.1-202ENST00000482888 637 ntBASIC2.72□□□□□ -1.97
RFX3P48380 NAA50-206ENST00000493454 964 ntTSL 2 BASIC2.72□□□□□ -1.97
RFX3P48380 AC109464.2-201ENST00000510242 943 ntBASIC2.72□□□□□ -1.97
RFX3P48380 AC008700.1-201ENST00000512571 654 ntTSL 3 BASIC2.72□□□□□ -1.97
RFX3P48380 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
RFX3P48380 ADAM18-206ENST00000520772 1429 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
RFX3P48380 AC084706.1-201ENST00000521879 558 ntTSL 2 BASIC2.72□□□□□ -1.97
RFX3P48380 AC010376.1-201ENST00000522101 334 ntBASIC2.72□□□□□ -1.97
RFX3P48380 OR5G4P-201ENST00000525251 760 ntBASIC2.72□□□□□ -1.97
RFX3P48380 PSMA2P1-201ENST00000526365 646 ntBASIC2.72□□□□□ -1.97
RFX3P48380 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC2.72□□□□□ -1.97
RFX3P48380 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.72□□□□□ -1.97
RFX3P48380 AP000889.1-201ENST00000530968 660 ntBASIC2.72□□□□□ -1.97
RFX3P48380 H3F3AP1-201ENST00000559984 334 ntBASIC2.72□□□□□ -1.97
RFX3P48380 MIR3912-201ENST00000577566 105 ntBASIC2.72□□□□□ -1.97
RFX3P48380 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC2.72□□□□□ -1.97
RFX3P48380 BNIP3P31-201ENST00000604515 566 ntBASIC2.72□□□□□ -1.97
RFX3P48380 AL031176.1-201ENST00000604554 466 ntBASIC2.72□□□□□ -1.97
RFX3P48380 AC069545.1-201ENST00000605671 358 ntBASIC2.72□□□□□ -1.97
RFX3P48380 AP002826.1-201ENST00000608835 315 ntBASIC2.72□□□□□ -1.97
RFX3P48380 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC2.72□□□□□ -1.97
RFX3P48380 AC131902.3-201ENST00000611767 581 ntBASIC2.72□□□□□ -1.97
RFX3P48380 AC005332.6-201ENST00000613178 446 ntBASIC2.72□□□□□ -1.97
RFX3P48380 AC027309.3-201ENST00000623419 351 ntBASIC2.72□□□□□ -1.97
RFX3P48380 OR1S1-201ENST00000624470 978 ntBASIC2.72□□□□□ -1.97
RFX3P48380 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC2.72□□□□□ -1.97
RFX3P48380 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
RFX3P48380 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC2.72□□□□□ -1.97
RFX3P48380 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC2.72□□□□□ -1.97
RFX3P48380 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
RFX3P48380 OR8B3-201ENST00000354597 942 ntAPPRIS P1 BASIC2.71□□□□□ -1.98
RFX3P48380 OR8B2-201ENST00000375013 942 ntAPPRIS P1 BASIC2.71□□□□□ -1.98
RFX3P48380 RNU6-1027P-201ENST00000383998 107 ntBASIC2.71□□□□□ -1.98
RFX3P48380 RNU6-298P-201ENST00000390888 96 ntBASIC2.71□□□□□ -1.98
RFX3P48380 RNU6-1000P-201ENST00000391066 106 ntBASIC2.71□□□□□ -1.98
RFX3P48380 ERMN-204ENST00000409925 556 ntTSL 4 BASIC2.71□□□□□ -1.98
RFX3P48380 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC2.71□□□□□ -1.98
RFX3P48380 RPL35AP12-201ENST00000425362 338 ntBASIC2.71□□□□□ -1.98
RFX3P48380 C1DP1-201ENST00000426049 402 ntBASIC2.71□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 93.3 ms