Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 RNY4P34-201ENST00000364779 95 ntBASIC4.03□□□□□ -1.76
VPS4AQ9UN37 RNU6-1283P-201ENST00000365314 105 ntBASIC4.03□□□□□ -1.76
VPS4AQ9UN37 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC4.03□□□□□ -1.76
VPS4AQ9UN37 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
VPS4AQ9UN37 Y_RNA.554-201ENST00000384672 102 ntBASIC4.03□□□□□ -1.76
VPS4AQ9UN37 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
VPS4AQ9UN37 RPL23AP32-201ENST00000395315 459 ntBASIC4.03□□□□□ -1.76
VPS4AQ9UN37 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC4.03□□□□□ -1.76
VPS4AQ9UN37 CRYBB2P1-203ENST00000415709 538 ntBASIC4.03□□□□□ -1.76
VPS4AQ9UN37 BX295541.1-201ENST00000417774 250 ntBASIC4.03□□□□□ -1.76
VPS4AQ9UN37 AC092832.1-201ENST00000422934 400 ntBASIC4.03□□□□□ -1.76
VPS4AQ9UN37 USP9YP36-201ENST00000424581 829 ntBASIC4.03□□□□□ -1.76
VPS4AQ9UN37 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC4.03□□□□□ -1.76
VPS4AQ9UN37 RPL21P89-201ENST00000444021 467 ntBASIC4.03□□□□□ -1.76
VPS4AQ9UN37 PSPHP1-201ENST00000450062 261 ntBASIC4.03□□□□□ -1.76
VPS4AQ9UN37 SNORD108-201ENST00000459332 71 ntBASIC4.03□□□□□ -1.76
VPS4AQ9UN37 RPL7P15-201ENST00000461190 712 ntBASIC4.03□□□□□ -1.76
VPS4AQ9UN37 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC4.03□□□□□ -1.76
VPS4AQ9UN37 RPS3AP17-201ENST00000472594 777 ntBASIC4.03□□□□□ -1.76
VPS4AQ9UN37 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC4.03□□□□□ -1.76
VPS4AQ9UN37 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC4.03□□□□□ -1.76
VPS4AQ9UN37 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC4.03□□□□□ -1.76
VPS4AQ9UN37 ADGRL3-AS1-203ENST00000506704 606 ntTSL 5 BASIC4.03□□□□□ -1.76
VPS4AQ9UN37 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC4.03□□□□□ -1.76
VPS4AQ9UN37 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC4.03□□□□□ -1.76
VPS4AQ9UN37 AC107934.1-201ENST00000522215 217 ntBASIC4.03□□□□□ -1.76
VPS4AQ9UN37 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC4.03□□□□□ -1.76
VPS4AQ9UN37 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC4.03□□□□□ -1.76
VPS4AQ9UN37 AC087883.1-201ENST00000551882 391 ntBASIC4.03□□□□□ -1.76
VPS4AQ9UN37 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC4.03□□□□□ -1.76
VPS4AQ9UN37 MEG8-218ENST00000556720 456 ntTSL 3 BASIC4.03□□□□□ -1.76
VPS4AQ9UN37 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC4.03□□□□□ -1.76
VPS4AQ9UN37 AL356432.3-201ENST00000568952 465 ntBASIC4.03□□□□□ -1.76
VPS4AQ9UN37 AL669831.4-202ENST00000590817 238 ntBASIC4.03□□□□□ -1.76
VPS4AQ9UN37 AC006329.2-201ENST00000611491 394 ntBASIC4.03□□□□□ -1.76
VPS4AQ9UN37 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC4.03□□□□□ -1.76
VPS4AQ9UN37 MIR6875-201ENST00000617506 72 ntBASIC4.03□□□□□ -1.76
VPS4AQ9UN37 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC4.03□□□□□ -1.76
VPS4AQ9UN37 AC040168.1-201ENST00000623594 991 ntBASIC4.03□□□□□ -1.76
VPS4AQ9UN37 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
VPS4AQ9UN37 AC140479.6-201ENST00000633535 357 ntBASIC4.03□□□□□ -1.76
VPS4AQ9UN37 NMD3P1-201ENST00000439704 1488 ntBASIC4.03□□□□□ -1.76
VPS4AQ9UN37 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC4.03□□□□□ -1.76
VPS4AQ9UN37 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC4.03□□□□□ -1.76
VPS4AQ9UN37 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
VPS4AQ9UN37 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC4.03□□□□□ -1.77
VPS4AQ9UN37 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.77
VPS4AQ9UN37 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC4.03□□□□□ -1.77
VPS4AQ9UN37 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
VPS4AQ9UN37 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC4.02□□□□□ -1.77
VPS4AQ9UN37 LARP1BP1-201ENST00000506036 1359 ntBASIC4.02□□□□□ -1.77
VPS4AQ9UN37 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
VPS4AQ9UN37 MIR331-201ENST00000362302 94 ntBASIC4.02□□□□□ -1.77
VPS4AQ9UN37 MIR124-3-201ENST00000384866 87 ntBASIC4.02□□□□□ -1.77
VPS4AQ9UN37 MIR153-1-201ENST00000384914 90 ntBASIC4.02□□□□□ -1.77
VPS4AQ9UN37 MT-TC-201ENST00000387405 66 ntBASIC4.02□□□□□ -1.77
VPS4AQ9UN37 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
VPS4AQ9UN37 RNU6-821P-201ENST00000390995 107 ntBASIC4.02□□□□□ -1.77
VPS4AQ9UN37 MIR1250-201ENST00000408098 113 ntBASIC4.02□□□□□ -1.77
VPS4AQ9UN37 RNA5SP239-201ENST00000410218 129 ntBASIC4.02□□□□□ -1.77
VPS4AQ9UN37 AC108032.1-201ENST00000416706 207 ntBASIC4.02□□□□□ -1.77
VPS4AQ9UN37 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC4.02□□□□□ -1.77
VPS4AQ9UN37 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC4.02□□□□□ -1.77
VPS4AQ9UN37 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC4.02□□□□□ -1.77
VPS4AQ9UN37 RBMX2P4-201ENST00000441256 376 ntBASIC4.02□□□□□ -1.77
VPS4AQ9UN37 AL512326.1-201ENST00000443050 721 ntBASIC4.02□□□□□ -1.77
VPS4AQ9UN37 AC112653.1-201ENST00000443851 386 ntBASIC4.02□□□□□ -1.77
VPS4AQ9UN37 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC4.02□□□□□ -1.77
VPS4AQ9UN37 MTND1P9-201ENST00000453775 944 ntBASIC4.02□□□□□ -1.77
VPS4AQ9UN37 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC4.02□□□□□ -1.77
VPS4AQ9UN37 RPL7L1P8-201ENST00000469911 741 ntBASIC4.02□□□□□ -1.77
VPS4AQ9UN37 C1GALT1C1L-201ENST00000475092 1172 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
VPS4AQ9UN37 RBM43P1-201ENST00000476891 1081 ntBASIC4.02□□□□□ -1.77
VPS4AQ9UN37 RPL23AP41-201ENST00000484754 458 ntBASIC4.02□□□□□ -1.77
VPS4AQ9UN37 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC4.02□□□□□ -1.77
VPS4AQ9UN37 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC4.02□□□□□ -1.77
VPS4AQ9UN37 PTGES3P3-201ENST00000511479 482 ntBASIC4.02□□□□□ -1.77
VPS4AQ9UN37 NPM1P41-201ENST00000512920 831 ntBASIC4.02□□□□□ -1.77
VPS4AQ9UN37 AC134698.4-201ENST00000523451 826 ntBASIC4.02□□□□□ -1.77
VPS4AQ9UN37 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC4.02□□□□□ -1.77
VPS4AQ9UN37 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC4.02□□□□□ -1.77
VPS4AQ9UN37 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC4.02□□□□□ -1.77
VPS4AQ9UN37 AMZ2-204ENST00000577273 895 ntTSL 5 BASIC4.02□□□□□ -1.77
VPS4AQ9UN37 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC4.02□□□□□ -1.77
VPS4AQ9UN37 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC4.02□□□□□ -1.77
VPS4AQ9UN37 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC4.02□□□□□ -1.77
VPS4AQ9UN37 AC245014.2-201ENST00000603689 287 ntBASIC4.02□□□□□ -1.77
VPS4AQ9UN37 AC246785.4-201ENST00000605374 287 ntBASIC4.02□□□□□ -1.77
VPS4AQ9UN37 AC012603.1-201ENST00000606424 528 ntBASIC4.02□□□□□ -1.77
VPS4AQ9UN37 RNU4-89P-201ENST00000607443 133 ntBASIC4.02□□□□□ -1.77
VPS4AQ9UN37 AC092954.2-201ENST00000609103 430 ntBASIC4.02□□□□□ -1.77
VPS4AQ9UN37 AC233309.1-201ENST00000619522 751 ntBASIC4.02□□□□□ -1.77
VPS4AQ9UN37 AC244100.1-202ENST00000621554 382 ntBASIC4.02□□□□□ -1.77
VPS4AQ9UN37 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC4.02□□□□□ -1.77
VPS4AQ9UN37 AC091953.2-201ENST00000623979 160 ntBASIC4.02□□□□□ -1.77
VPS4AQ9UN37 AC068880.5-201ENST00000624331 290 ntBASIC4.02□□□□□ -1.77
VPS4AQ9UN37 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC4.02□□□□□ -1.77
VPS4AQ9UN37 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC4.02□□□□□ -1.77
VPS4AQ9UN37 AC110994.2-201ENST00000635481 492 ntBASIC4.02□□□□□ -1.77
VPS4AQ9UN37 AC010149.2-201ENST00000637608 315 ntBASIC4.02□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 1773 ms