Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
VPS28Q9UK41 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
VPS28Q9UK41 RNU5E-8P-201ENST00000363502 116 ntBASIC3.71□□□□□ -1.82
VPS28Q9UK41 MIR591-201ENST00000385290 95 ntBASIC3.71□□□□□ -1.82
VPS28Q9UK41 RNU6-516P-201ENST00000411381 104 ntBASIC3.71□□□□□ -1.82
VPS28Q9UK41 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC3.71□□□□□ -1.82
VPS28Q9UK41 RPL23AP39-201ENST00000415533 405 ntBASIC3.71□□□□□ -1.82
VPS28Q9UK41 AC005005.2-201ENST00000420779 380 ntBASIC3.71□□□□□ -1.82
VPS28Q9UK41 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC3.71□□□□□ -1.82
VPS28Q9UK41 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC3.71□□□□□ -1.82
VPS28Q9UK41 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC3.71□□□□□ -1.82
VPS28Q9UK41 HMGN2P31-201ENST00000432430 273 ntBASIC3.71□□□□□ -1.82
VPS28Q9UK41 NDUFB1P1-201ENST00000435191 180 ntBASIC3.71□□□□□ -1.82
VPS28Q9UK41 TXNP1-201ENST00000441872 371 ntBASIC3.71□□□□□ -1.82
VPS28Q9UK41 MTND5P2-201ENST00000442927 1142 ntBASIC3.71□□□□□ -1.82
VPS28Q9UK41 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC3.71□□□□□ -1.82
VPS28Q9UK41 RPL17P49-201ENST00000443728 411 ntBASIC3.71□□□□□ -1.82
VPS28Q9UK41 AC073387.1-201ENST00000453261 709 ntBASIC3.71□□□□□ -1.82
VPS28Q9UK41 OR6K1P-201ENST00000456766 971 ntBASIC3.71□□□□□ -1.82
VPS28Q9UK41 RNA5SP310-201ENST00000459084 116 ntBASIC3.71□□□□□ -1.82
VPS28Q9UK41 AC004801.2-202ENST00000463559 283 ntBASIC3.71□□□□□ -1.82
VPS28Q9UK41 AC072039.1-201ENST00000477611 581 ntBASIC3.71□□□□□ -1.82
VPS28Q9UK41 HSPE1P6-201ENST00000479457 291 ntBASIC3.71□□□□□ -1.82
VPS28Q9UK41 AC106707.2-201ENST00000484182 374 ntBASIC3.71□□□□□ -1.82
VPS28Q9UK41 PCBP2P3-201ENST00000509726 843 ntBASIC3.71□□□□□ -1.82
VPS28Q9UK41 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC3.71□□□□□ -1.82
VPS28Q9UK41 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC3.71□□□□□ -1.82
VPS28Q9UK41 MTATP6P15-201ENST00000527233 835 ntBASIC3.71□□□□□ -1.82
VPS28Q9UK41 AP000926.4-201ENST00000527351 454 ntBASIC3.71□□□□□ -1.82
VPS28Q9UK41 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
VPS28Q9UK41 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC3.71□□□□□ -1.82
VPS28Q9UK41 MIR4444-1-201ENST00000581696 74 ntBASIC3.71□□□□□ -1.82
VPS28Q9UK41 MIR544B-201ENST00000582372 78 ntBASIC3.71□□□□□ -1.82
VPS28Q9UK41 MIR4444-2-201ENST00000584390 74 ntBASIC3.71□□□□□ -1.82
VPS28Q9UK41 AC008751.2-201ENST00000597885 980 ntBASIC3.71□□□□□ -1.82
VPS28Q9UK41 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC3.71□□□□□ -1.82
VPS28Q9UK41 AL357094.1-201ENST00000603845 844 ntBASIC3.71□□□□□ -1.82
VPS28Q9UK41 AC008962.1-201ENST00000605729 304 ntBASIC3.71□□□□□ -1.82
VPS28Q9UK41 AC009570.1-201ENST00000609599 745 ntBASIC3.71□□□□□ -1.82
VPS28Q9UK41 AP000254.1-201ENST00000609934 520 ntBASIC3.71□□□□□ -1.82
VPS28Q9UK41 AC068831.7-201ENST00000616954 363 ntBASIC3.71□□□□□ -1.82
VPS28Q9UK41 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC3.71□□□□□ -1.82
VPS28Q9UK41 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC3.71□□□□□ -1.82
VPS28Q9UK41 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
VPS28Q9UK41 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
VPS28Q9UK41 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
VPS28Q9UK41 AC008568.2-201ENST00000623862 2313 ntBASIC3.71□□□□□ -1.82
VPS28Q9UK41 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC3.71□□□□□ -1.82
VPS28Q9UK41 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
VPS28Q9UK41 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC3.7□□□□□ -1.82
VPS28Q9UK41 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
VPS28Q9UK41 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
VPS28Q9UK41 5S_rRNA.1-201ENST00000364415 116 ntBASIC3.7□□□□□ -1.82
VPS28Q9UK41 RNU6-283P-201ENST00000364788 107 ntBASIC3.7□□□□□ -1.82
VPS28Q9UK41 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
VPS28Q9UK41 RNA5SP171-201ENST00000391071 115 ntBASIC3.7□□□□□ -1.82
VPS28Q9UK41 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
VPS28Q9UK41 FAT1P1-201ENST00000406588 507 ntBASIC3.7□□□□□ -1.82
VPS28Q9UK41 RN7SKP285-201ENST00000410137 318 ntBASIC3.7□□□□□ -1.82
VPS28Q9UK41 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC3.7□□□□□ -1.82
VPS28Q9UK41 AC233728.2-201ENST00000425348 757 ntBASIC3.7□□□□□ -1.82
VPS28Q9UK41 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC3.7□□□□□ -1.82
VPS28Q9UK41 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC3.7□□□□□ -1.82
VPS28Q9UK41 AL831737.1-201ENST00000441288 271 ntBASIC3.7□□□□□ -1.82
VPS28Q9UK41 FAM103A2P-201ENST00000444122 354 ntBASIC3.7□□□□□ -1.82
VPS28Q9UK41 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC3.7□□□□□ -1.82
VPS28Q9UK41 AL049714.1-201ENST00000466686 347 ntBASIC3.7□□□□□ -1.82
VPS28Q9UK41 RPS3AP50-201ENST00000487064 803 ntBASIC3.7□□□□□ -1.82
VPS28Q9UK41 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC3.7□□□□□ -1.82
VPS28Q9UK41 MTCYBP35-201ENST00000503630 1137 ntBASIC3.7□□□□□ -1.82
VPS28Q9UK41 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC3.7□□□□□ -1.82
VPS28Q9UK41 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
VPS28Q9UK41 RNU6-1129P-201ENST00000515964 104 ntBASIC3.7□□□□□ -1.82
VPS28Q9UK41 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC3.7□□□□□ -1.82
VPS28Q9UK41 HIGD1AP10-201ENST00000527837 282 ntBASIC3.7□□□□□ -1.82
VPS28Q9UK41 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC3.7□□□□□ -1.82
VPS28Q9UK41 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC3.7□□□□□ -1.82
VPS28Q9UK41 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC3.7□□□□□ -1.82
VPS28Q9UK41 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC3.7□□□□□ -1.82
VPS28Q9UK41 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.7□□□□□ -1.82
VPS28Q9UK41 AC060771.1-201ENST00000582031 164 ntBASIC3.7□□□□□ -1.82
VPS28Q9UK41 UBE2L4-201ENST00000587688 464 ntBASIC3.7□□□□□ -1.82
VPS28Q9UK41 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
VPS28Q9UK41 AC103710.4-201ENST00000609301 899 ntBASIC3.7□□□□□ -1.82
VPS28Q9UK41 MIR6075-201ENST00000620782 95 ntBASIC3.7□□□□□ -1.82
VPS28Q9UK41 AL158801.5-201ENST00000623123 465 ntBASIC3.7□□□□□ -1.82
VPS28Q9UK41 AL732618.1-201ENST00000623251 301 ntBASIC3.7□□□□□ -1.82
VPS28Q9UK41 MTND4P16-201ENST00000466108 1367 ntBASIC3.7□□□□□ -1.82
VPS28Q9UK41 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC3.7□□□□□ -1.82
VPS28Q9UK41 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
VPS28Q9UK41 TIGD2-201ENST00000317005 2083 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
VPS28Q9UK41 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.7□□□□□ -1.82
VPS28Q9UK41 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
VPS28Q9UK41 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.7□□□□□ -1.82
VPS28Q9UK41 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
VPS28Q9UK41 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
VPS28Q9UK41 SDAD1P2-201ENST00000441308 2028 ntBASIC3.7□□□□□ -1.82
VPS28Q9UK41 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
VPS28Q9UK41 DDX10P1-201ENST00000448545 1933 ntBASIC3.7□□□□□ -1.82
VPS28Q9UK41 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 78.8 ms