Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AC007256.1-201ENST00000392253 2765 ntBASIC3.12□□□□□ -1.91
LHX3Q9UBR4 RABGAP1L-203ENST00000347255 1744 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
LHX3Q9UBR4 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
LHX3Q9UBR4 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
LHX3Q9UBR4 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.11□□□□□ -1.91
LHX3Q9UBR4 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
LHX3Q9UBR4 AP000776.1-201ENST00000530032 1663 ntBASIC3.11□□□□□ -1.91
LHX3Q9UBR4 SRP72P2-201ENST00000344851 1979 ntBASIC3.11□□□□□ -1.91
LHX3Q9UBR4 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
LHX3Q9UBR4 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
LHX3Q9UBR4 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
LHX3Q9UBR4 MIR135A2-201ENST00000384854 100 ntBASIC3.11□□□□□ -1.91
LHX3Q9UBR4 RPL7P25-201ENST00000404151 721 ntBASIC3.11□□□□□ -1.91
LHX3Q9UBR4 RN7SKP220-201ENST00000410611 288 ntBASIC3.11□□□□□ -1.91
LHX3Q9UBR4 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC3.11□□□□□ -1.91
LHX3Q9UBR4 ELOCP9-201ENST00000418624 239 ntBASIC3.11□□□□□ -1.91
LHX3Q9UBR4 RPL21P32-201ENST00000419877 477 ntBASIC3.11□□□□□ -1.91
LHX3Q9UBR4 AL953862.1-201ENST00000423016 168 ntBASIC3.11□□□□□ -1.91
LHX3Q9UBR4 RPS25P9-201ENST00000435591 252 ntBASIC3.11□□□□□ -1.91
LHX3Q9UBR4 SETP5-201ENST00000437270 562 ntBASIC3.11□□□□□ -1.91
LHX3Q9UBR4 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC3.11□□□□□ -1.91
LHX3Q9UBR4 MTCYBP31-201ENST00000438855 1122 ntBASIC3.11□□□□□ -1.91
LHX3Q9UBR4 GYG2-AS1-201ENST00000445107 515 ntTSL 5 BASIC3.11□□□□□ -1.91
LHX3Q9UBR4 RAC1P7-201ENST00000445367 377 ntBASIC3.11□□□□□ -1.91
LHX3Q9UBR4 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC3.11□□□□□ -1.91
LHX3Q9UBR4 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC3.11□□□□□ -1.91
LHX3Q9UBR4 SSXP4-201ENST00000451349 245 ntBASIC3.11□□□□□ -1.91
LHX3Q9UBR4 TEX41-209ENST00000451478 452 ntTSL 2 BASIC3.11□□□□□ -1.91
LHX3Q9UBR4 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC3.11□□□□□ -1.91
LHX3Q9UBR4 RPL7P18-201ENST00000478965 734 ntBASIC3.11□□□□□ -1.91
LHX3Q9UBR4 AC021146.8-201ENST00000507455 733 ntBASIC3.11□□□□□ -1.91
LHX3Q9UBR4 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC3.11□□□□□ -1.91
LHX3Q9UBR4 RNU6-311P-201ENST00000516224 102 ntBASIC3.11□□□□□ -1.91
LHX3Q9UBR4 RNA5SP341-201ENST00000516261 117 ntBASIC3.11□□□□□ -1.91
LHX3Q9UBR4 AC023632.5-201ENST00000521010 491 ntTSL 3 BASIC3.11□□□□□ -1.91
LHX3Q9UBR4 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC3.11□□□□□ -1.91
LHX3Q9UBR4 MTND2P32-201ENST00000521584 1038 ntBASIC3.11□□□□□ -1.91
LHX3Q9UBR4 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
LHX3Q9UBR4 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
LHX3Q9UBR4 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC3.11□□□□□ -1.91
LHX3Q9UBR4 AC010198.2-201ENST00000550612 259 ntBASIC3.11□□□□□ -1.91
LHX3Q9UBR4 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC3.11□□□□□ -1.91
LHX3Q9UBR4 AL133370.1-201ENST00000554679 537 ntTSL 3 BASIC3.11□□□□□ -1.91
LHX3Q9UBR4 MTND4P33-201ENST00000556706 766 ntBASIC3.11□□□□□ -1.91
LHX3Q9UBR4 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC3.11□□□□□ -1.91
LHX3Q9UBR4 AGGF1P5-201ENST00000567900 919 ntBASIC3.11□□□□□ -1.91
LHX3Q9UBR4 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC3.11□□□□□ -1.91
LHX3Q9UBR4 OR4K8P-201ENST00000578842 1048 ntBASIC3.11□□□□□ -1.91
LHX3Q9UBR4 MIR4325-201ENST00000583049 90 ntBASIC3.11□□□□□ -1.91
LHX3Q9UBR4 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC3.11□□□□□ -1.91
LHX3Q9UBR4 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC3.11□□□□□ -1.91
LHX3Q9UBR4 AC022146.1-201ENST00000595307 847 ntBASIC3.11□□□□□ -1.91
LHX3Q9UBR4 BBIP1P1-201ENST00000602999 279 ntBASIC3.11□□□□□ -1.91
LHX3Q9UBR4 AC012443.1-201ENST00000605605 231 ntBASIC3.11□□□□□ -1.91
LHX3Q9UBR4 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
LHX3Q9UBR4 AP000240.1-201ENST00000609910 452 ntBASIC3.11□□□□□ -1.91
LHX3Q9UBR4 AL390240.1-201ENST00000612950 384 ntBASIC3.11□□□□□ -1.91
LHX3Q9UBR4 XIST_intron.1-201ENST00000619444 68 ntBASIC3.11□□□□□ -1.91
LHX3Q9UBR4 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC3.11□□□□□ -1.91
LHX3Q9UBR4 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC3.11□□□□□ -1.91
LHX3Q9UBR4 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.11□□□□□ -1.91
LHX3Q9UBR4 TAB3P1-202ENST00000452645 1634 ntBASIC3.11□□□□□ -1.91
LHX3Q9UBR4 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.11□□□□□ -1.91
LHX3Q9UBR4 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.11□□□□□ -1.91
LHX3Q9UBR4 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.1□□□□□ -1.91
LHX3Q9UBR4 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC3.1□□□□□ -1.91
LHX3Q9UBR4 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
LHX3Q9UBR4 AL136164.4-201ENST00000625013 2135 ntBASIC3.1□□□□□ -1.91
LHX3Q9UBR4 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.1□□□□□ -1.91
LHX3Q9UBR4 RIOK3P1-201ENST00000418778 1528 ntBASIC3.1□□□□□ -1.91
LHX3Q9UBR4 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC3.1□□□□□ -1.91
LHX3Q9UBR4 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
LHX3Q9UBR4 MIR422A-201ENST00000362286 90 ntBASIC3.1□□□□□ -1.91
LHX3Q9UBR4 RNA5SP383-201ENST00000362934 120 ntBASIC3.1□□□□□ -1.91
LHX3Q9UBR4 MLLT3-201ENST00000380321 708 ntTSL 3 BASIC3.1□□□□□ -1.91
LHX3Q9UBR4 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC3.1□□□□□ -1.91
LHX3Q9UBR4 RPL32P35-201ENST00000415214 394 ntBASIC3.1□□□□□ -1.91
LHX3Q9UBR4 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC3.1□□□□□ -1.91
LHX3Q9UBR4 SSXP9-201ENST00000417503 292 ntBASIC3.1□□□□□ -1.91
LHX3Q9UBR4 AL161909.2-201ENST00000417577 409 ntTSL 5 BASIC3.1□□□□□ -1.91
LHX3Q9UBR4 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC3.1□□□□□ -1.91
LHX3Q9UBR4 AL021026.1-201ENST00000422841 658 ntTSL 3 BASIC3.1□□□□□ -1.91
LHX3Q9UBR4 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC3.1□□□□□ -1.91
LHX3Q9UBR4 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC3.1□□□□□ -1.91
LHX3Q9UBR4 MTCO2P20-201ENST00000437339 673 ntBASIC3.1□□□□□ -1.91
LHX3Q9UBR4 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC3.1□□□□□ -1.91
LHX3Q9UBR4 AL356475.1-201ENST00000440321 341 ntTSL 5 BASIC3.1□□□□□ -1.91
LHX3Q9UBR4 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.1□□□□□ -1.91
LHX3Q9UBR4 CYCSP32-201ENST00000440548 321 ntBASIC3.1□□□□□ -1.91
LHX3Q9UBR4 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC3.1□□□□□ -1.91
LHX3Q9UBR4 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC3.1□□□□□ -1.91
LHX3Q9UBR4 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC3.1□□□□□ -1.91
LHX3Q9UBR4 snoU13.8-201ENST00000458890 104 ntBASIC3.1□□□□□ -1.91
LHX3Q9UBR4 AC092754.2-201ENST00000463506 460 ntBASIC3.1□□□□□ -1.91
LHX3Q9UBR4 RPL23AP14-201ENST00000468281 468 ntBASIC3.1□□□□□ -1.91
LHX3Q9UBR4 RN7SL20P-201ENST00000488827 297 ntBASIC3.1□□□□□ -1.91
LHX3Q9UBR4 THAP6-203ENST00000502620 582 ntTSL 3 BASIC3.1□□□□□ -1.91
LHX3Q9UBR4 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC3.1□□□□□ -1.91
LHX3Q9UBR4 AC093677.1-201ENST00000514414 678 ntBASIC3.1□□□□□ -1.91
LHX3Q9UBR4 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC3.1□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 97.3 ms