Protein–RNA interactions for Protein: Q99909

SSX3, Protein SSX3, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX3Q99909 AL391832.1-201ENST00000423963 423 ntTSL 5 BASIC3.1□□□□□ -1.91
SSX3Q99909 AC012498.1-201ENST00000424037 437 ntBASIC3.1□□□□□ -1.91
SSX3Q99909 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC3.1□□□□□ -1.91
SSX3Q99909 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC3.1□□□□□ -1.91
SSX3Q99909 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC3.1□□□□□ -1.91
SSX3Q99909 AL008629.1-201ENST00000438615 184 ntBASIC3.1□□□□□ -1.91
SSX3Q99909 SNRPGP6-201ENST00000451124 220 ntBASIC3.1□□□□□ -1.91
SSX3Q99909 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC3.1□□□□□ -1.91
SSX3Q99909 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC3.1□□□□□ -1.91
SSX3Q99909 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC3.1□□□□□ -1.91
SSX3Q99909 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC3.1□□□□□ -1.91
SSX3Q99909 RPL7P15-201ENST00000461190 712 ntBASIC3.1□□□□□ -1.91
SSX3Q99909 AC021382.1-201ENST00000483523 359 ntBASIC3.1□□□□□ -1.91
SSX3Q99909 RPL7P24-201ENST00000493052 752 ntBASIC3.1□□□□□ -1.91
SSX3Q99909 AP002812.1-201ENST00000495378 474 ntBASIC3.1□□□□□ -1.91
SSX3Q99909 PCBP2P3-201ENST00000509726 843 ntBASIC3.1□□□□□ -1.91
SSX3Q99909 HSPE1P23-201ENST00000509838 286 ntBASIC3.1□□□□□ -1.91
SSX3Q99909 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC3.1□□□□□ -1.91
SSX3Q99909 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC3.1□□□□□ -1.91
SSX3Q99909 AC022483.1-201ENST00000514020 567 ntBASIC3.1□□□□□ -1.91
SSX3Q99909 RN7SKP83-201ENST00000516512 178 ntBASIC3.1□□□□□ -1.91
SSX3Q99909 RNU6-352P-201ENST00000516908 107 ntBASIC3.1□□□□□ -1.91
SSX3Q99909 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC3.1□□□□□ -1.91
SSX3Q99909 DEFB108D-201ENST00000527787 222 ntBASIC3.1□□□□□ -1.91
SSX3Q99909 AP000867.2-201ENST00000532468 320 ntBASIC3.1□□□□□ -1.91
SSX3Q99909 LINC02410-201ENST00000553095 393 ntTSL 2 BASIC3.1□□□□□ -1.91
SSX3Q99909 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC3.1□□□□□ -1.91
SSX3Q99909 AC034268.2-201ENST00000571784 482 ntBASIC3.1□□□□□ -1.91
SSX3Q99909 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC3.1□□□□□ -1.91
SSX3Q99909 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC3.1□□□□□ -1.91
SSX3Q99909 AC138207.5-201ENST00000579561 409 ntTSL 3 BASIC3.1□□□□□ -1.91
SSX3Q99909 MIR3158-1-201ENST00000583596 81 ntBASIC3.1□□□□□ -1.91
SSX3Q99909 AC105224.1-201ENST00000587055 421 ntBASIC3.1□□□□□ -1.91
SSX3Q99909 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC3.1□□□□□ -1.91
SSX3Q99909 AP001429.1-201ENST00000602568 530 ntBASIC3.1□□□□□ -1.91
SSX3Q99909 AL158211.4-201ENST00000606988 584 ntBASIC3.1□□□□□ -1.91
SSX3Q99909 AC004832.5-201ENST00000608677 401 ntBASIC3.1□□□□□ -1.91
SSX3Q99909 AC072039.2-201ENST00000608883 439 ntBASIC3.1□□□□□ -1.91
SSX3Q99909 AC140725.3-201ENST00000616193 880 ntBASIC3.1□□□□□ -1.91
SSX3Q99909 AP000770.2-201ENST00000623694 100 ntBASIC3.1□□□□□ -1.91
SSX3Q99909 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC3.1□□□□□ -1.91
SSX3Q99909 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC3.1□□□□□ -1.91
SSX3Q99909 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC3.1□□□□□ -1.91
SSX3Q99909 OR6C71P-202ENST00000641886 1107 ntBASIC3.1□□□□□ -1.91
SSX3Q99909 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
SSX3Q99909 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.1□□□□□ -1.91
SSX3Q99909 AP000526.1-201ENST00000603308 1388 ntBASIC3.1□□□□□ -1.91
SSX3Q99909 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
SSX3Q99909 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC3.1□□□□□ -1.91
SSX3Q99909 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.1□□□□□ -1.91
SSX3Q99909 AC103988.1-201ENST00000566382 2177 ntBASIC3.1□□□□□ -1.91
SSX3Q99909 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC3.09□□□□□ -1.91
SSX3Q99909 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC3.09□□□□□ -1.91
SSX3Q99909 AC008568.2-201ENST00000623862 2313 ntBASIC3.09□□□□□ -1.91
SSX3Q99909 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
SSX3Q99909 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.09□□□□□ -1.91
SSX3Q99909 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
SSX3Q99909 AL672167.1-206ENST00000356293 943 ntBASIC3.09□□□□□ -1.91
SSX3Q99909 Y_RNA.18-201ENST00000362461 102 ntBASIC3.09□□□□□ -1.91
SSX3Q99909 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC3.09□□□□□ -1.91
SSX3Q99909 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC3.09□□□□□ -1.91
SSX3Q99909 CFHR3-203ENST00000391985 1043 ntTSL 2 BASIC3.09□□□□□ -1.91
SSX3Q99909 RN7SKP266-201ENST00000410232 287 ntBASIC3.09□□□□□ -1.91
SSX3Q99909 MTCO1P17-201ENST00000411522 491 ntBASIC3.09□□□□□ -1.91
SSX3Q99909 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC3.09□□□□□ -1.91
SSX3Q99909 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC3.09□□□□□ -1.91
SSX3Q99909 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC3.09□□□□□ -1.91
SSX3Q99909 AL591419.1-201ENST00000427423 339 ntBASIC3.09□□□□□ -1.91
SSX3Q99909 AC018644.1-201ENST00000429934 551 ntBASIC3.09□□□□□ -1.91
SSX3Q99909 OR4K11P-201ENST00000431829 904 ntBASIC3.09□□□□□ -1.91
SSX3Q99909 OR2B8P-201ENST00000432841 938 ntBASIC3.09□□□□□ -1.91
SSX3Q99909 RPL26P6-201ENST00000440913 438 ntBASIC3.09□□□□□ -1.91
SSX3Q99909 NOTCH2P1-201ENST00000443481 624 ntBASIC3.09□□□□□ -1.91
SSX3Q99909 ACTR3P3-201ENST00000480448 893 ntBASIC3.09□□□□□ -1.91
SSX3Q99909 PANCR-202ENST00000513690 448 ntTSL 2 BASIC3.09□□□□□ -1.91
SSX3Q99909 AC026801.2-201ENST00000515352 425 ntBASIC3.09□□□□□ -1.91
SSX3Q99909 SNORA67.7-201ENST00000516664 135 ntBASIC3.09□□□□□ -1.91
SSX3Q99909 PAICSP4-201ENST00000517543 1253 ntBASIC3.09□□□□□ -1.91
SSX3Q99909 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC3.09□□□□□ -1.91
SSX3Q99909 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC3.09□□□□□ -1.91
SSX3Q99909 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC3.09□□□□□ -1.91
SSX3Q99909 CASP1P1-201ENST00000526345 212 ntBASIC3.09□□□□□ -1.91
SSX3Q99909 CD44-AS1-201ENST00000528869 587 ntTSL 4 BASIC3.09□□□□□ -1.91
SSX3Q99909 DNAJC8P1-201ENST00000554535 372 ntBASIC3.09□□□□□ -1.91
SSX3Q99909 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC3.09□□□□□ -1.91
SSX3Q99909 AC136618.2-201ENST00000575091 400 ntBASIC3.09□□□□□ -1.91
SSX3Q99909 ZNF415P1-201ENST00000582279 1166 ntBASIC3.09□□□□□ -1.91
SSX3Q99909 NDUFV2-AS1-202ENST00000583081 399 ntTSL 5 BASIC3.09□□□□□ -1.91
SSX3Q99909 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC3.09□□□□□ -1.91
SSX3Q99909 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC3.09□□□□□ -1.91
SSX3Q99909 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC3.09□□□□□ -1.91
SSX3Q99909 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC3.09□□□□□ -1.91
SSX3Q99909 AL450472.3-201ENST00000615578 367 ntBASIC3.09□□□□□ -1.91
SSX3Q99909 AC009464.1-201ENST00000615731 469 ntBASIC3.09□□□□□ -1.91
SSX3Q99909 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC3.09□□□□□ -1.91
SSX3Q99909 AC027309.3-201ENST00000623419 351 ntBASIC3.09□□□□□ -1.91
SSX3Q99909 AP003122.6-201ENST00000623831 495 ntBASIC3.09□□□□□ -1.91
SSX3Q99909 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
SSX3Q99909 AL513302.2-201ENST00000562313 1842 ntBASIC3.09□□□□□ -1.92
SSX3Q99909 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.09□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 121.5 ms