Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 PLCE1P1-201ENST00000622094 305 ntBASIC4.28□□□□□ -1.72
CCDC140Q96MF4 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC4.28□□□□□ -1.72
CCDC140Q96MF4 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC4.28□□□□□ -1.72
CCDC140Q96MF4 AC015813.1-203ENST00000585065 4722 ntTSL 2 BASIC4.28□□□□□ -1.72
CCDC140Q96MF4 CD36-221ENST00000534394 1741 ntTSL 2 BASIC4.28□□□□□ -1.72
CCDC140Q96MF4 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
CCDC140Q96MF4 AL360270.2-201ENST00000562952 5985 ntBASIC4.28□□□□□ -1.72
CCDC140Q96MF4 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
CCDC140Q96MF4 IL1RAP-205ENST00000412504 4875 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
CCDC140Q96MF4 TENM1-202ENST00000422452 12891 ntAPPRIS ALT1 TSL 1 (best) BASIC4.28□□□□□ -1.73
CCDC140Q96MF4 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC4.28□□□□□ -1.73
CCDC140Q96MF4 SLCO1C1-209ENST00000545604 2557 ntTSL 2 BASIC4.27□□□□□ -1.73
CCDC140Q96MF4 PNPLA4-203ENST00000444736 2752 ntAPPRIS P1 TSL 4 BASIC4.27□□□□□ -1.73
CCDC140Q96MF4 UGT2A1-205ENST00000512704 2519 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
CCDC140Q96MF4 ZNF343-207ENST00000612935 3675 ntAPPRIS ALT2 TSL 5 BASIC4.27□□□□□ -1.73
CCDC140Q96MF4 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
CCDC140Q96MF4 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC4.27□□□□□ -1.73
CCDC140Q96MF4 MYO5A-201ENST00000356338 11971 ntAPPRIS ALT1 TSL 1 (best) BASIC4.27□□□□□ -1.73
CCDC140Q96MF4 PNPT1P2-201ENST00000456768 2050 ntBASIC4.27□□□□□ -1.73
CCDC140Q96MF4 SAMSN1-203ENST00000400566 1888 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
CCDC140Q96MF4 AC092681.1-201ENST00000297369 291 ntBASIC4.27□□□□□ -1.73
CCDC140Q96MF4 WFDC11-202ENST00000356562 642 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
CCDC140Q96MF4 RN7SKP81-201ENST00000365603 331 ntBASIC4.27□□□□□ -1.73
CCDC140Q96MF4 RNU6-395P-201ENST00000365662 106 ntBASIC4.27□□□□□ -1.73
CCDC140Q96MF4 MIR517A-201ENST00000385001 87 ntBASIC4.27□□□□□ -1.73
CCDC140Q96MF4 MIR551A-201ENST00000385042 96 ntBASIC4.27□□□□□ -1.73
CCDC140Q96MF4 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC4.27□□□□□ -1.73
CCDC140Q96MF4 SDHDP6-201ENST00000414693 480 ntBASIC4.27□□□□□ -1.73
CCDC140Q96MF4 Z85995.1-201ENST00000415547 335 ntBASIC4.27□□□□□ -1.73
CCDC140Q96MF4 EIF4A1P7-201ENST00000421800 1220 ntBASIC4.27□□□□□ -1.73
CCDC140Q96MF4 UBE2D3P2-201ENST00000424409 445 ntBASIC4.27□□□□□ -1.73
CCDC140Q96MF4 AL732292.1-201ENST00000426692 226 ntBASIC4.27□□□□□ -1.73
CCDC140Q96MF4 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC4.27□□□□□ -1.73
CCDC140Q96MF4 AL445644.1-201ENST00000436524 751 ntTSL 2 BASIC4.27□□□□□ -1.73
CCDC140Q96MF4 PIGFP3-201ENST00000441918 722 ntBASIC4.27□□□□□ -1.73
CCDC140Q96MF4 CECR9-201ENST00000453421 199 ntBASIC4.27□□□□□ -1.73
CCDC140Q96MF4 PCMTD1P1-201ENST00000455560 355 ntBASIC4.27□□□□□ -1.73
CCDC140Q96MF4 SNORD5.1-201ENST00000458800 75 ntBASIC4.27□□□□□ -1.73
CCDC140Q96MF4 AC005532.2-201ENST00000467154 373 ntBASIC4.27□□□□□ -1.73
CCDC140Q96MF4 RN7SL799P-201ENST00000475891 298 ntBASIC4.27□□□□□ -1.73
CCDC140Q96MF4 KC877373.1-201ENST00000479066 408 ntBASIC4.27□□□□□ -1.73
CCDC140Q96MF4 AC021146.2-201ENST00000504736 556 ntBASIC4.27□□□□□ -1.73
CCDC140Q96MF4 MIR892C-201ENST00000516410 77 ntBASIC4.27□□□□□ -1.73
CCDC140Q96MF4 RNU6-699P-201ENST00000517081 110 ntBASIC4.27□□□□□ -1.73
CCDC140Q96MF4 AP006259.1-201ENST00000528520 561 ntTSL 2 BASIC4.27□□□□□ -1.73
CCDC140Q96MF4 FKBP1BP1-201ENST00000553366 325 ntBASIC4.27□□□□□ -1.73
CCDC140Q96MF4 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC4.27□□□□□ -1.73
CCDC140Q96MF4 RNA5SP440-201ENST00000612665 119 ntBASIC4.27□□□□□ -1.73
CCDC140Q96MF4 AC090132.2-201ENST00000615881 347 ntBASIC4.27□□□□□ -1.73
CCDC140Q96MF4 AC127024.6-201ENST00000621598 424 ntBASIC4.27□□□□□ -1.73
CCDC140Q96MF4 ESRRG-219ENST00000487276 3015 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
CCDC140Q96MF4 NELL2-205ENST00000452445 3196 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
CCDC140Q96MF4 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
CCDC140Q96MF4 SLC12A6-216ENST00000560164 3744 ntTSL 2 BASIC4.27□□□□□ -1.73
CCDC140Q96MF4 AC022893.1-201ENST00000517664 3549 ntTSL 2 BASIC4.27□□□□□ -1.73
CCDC140Q96MF4 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
CCDC140Q96MF4 BRCA1-203ENST00000357654 7094 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
CCDC140Q96MF4 PDE5A-203ENST00000394439 6770 ntAPPRIS ALT2 TSL 5 BASIC4.27□□□□□ -1.73
CCDC140Q96MF4 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC4.27□□□□□ -1.73
CCDC140Q96MF4 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC4.27□□□□□ -1.73
CCDC140Q96MF4 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
CCDC140Q96MF4 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
CCDC140Q96MF4 PIGK-202ENST00000370812 4596 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
CCDC140Q96MF4 PFKFB2-201ENST00000367079 3494 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
CCDC140Q96MF4 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC4.26□□□□□ -1.73
CCDC140Q96MF4 GAPVD1-206ENST00000394104 6737 ntTSL 2 BASIC4.26□□□□□ -1.73
CCDC140Q96MF4 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
CCDC140Q96MF4 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC4.26□□□□□ -1.73
CCDC140Q96MF4 AC005183.1-201ENST00000603687 1979 ntBASIC4.26□□□□□ -1.73
CCDC140Q96MF4 OR5P1P-201ENST00000299512 925 ntBASIC4.26□□□□□ -1.73
CCDC140Q96MF4 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC4.26□□□□□ -1.73
CCDC140Q96MF4 RNU6-790P-201ENST00000384479 105 ntBASIC4.26□□□□□ -1.73
CCDC140Q96MF4 AL133270.1-201ENST00000402635 279 ntBASIC4.26□□□□□ -1.73
CCDC140Q96MF4 RN7SKP286-201ENST00000410894 299 ntBASIC4.26□□□□□ -1.73
CCDC140Q96MF4 MCFD2P1-201ENST00000417812 300 ntBASIC4.26□□□□□ -1.73
CCDC140Q96MF4 AC092634.4-201ENST00000419937 423 ntTSL 3 BASIC4.26□□□□□ -1.73
CCDC140Q96MF4 PGBD4P6-201ENST00000421501 610 ntBASIC4.26□□□□□ -1.73
CCDC140Q96MF4 RSL24D1P6-201ENST00000426934 401 ntBASIC4.26□□□□□ -1.73
CCDC140Q96MF4 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
CCDC140Q96MF4 NDUFB4P8-201ENST00000435351 367 ntBASIC4.26□□□□□ -1.73
CCDC140Q96MF4 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC4.26□□□□□ -1.73
CCDC140Q96MF4 AL391987.1-201ENST00000441025 200 ntBASIC4.26□□□□□ -1.73
CCDC140Q96MF4 AL161636.2-201ENST00000445179 927 ntBASIC4.26□□□□□ -1.73
CCDC140Q96MF4 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC4.26□□□□□ -1.73
CCDC140Q96MF4 DHFRP3-201ENST00000455595 559 ntBASIC4.26□□□□□ -1.73
CCDC140Q96MF4 OARD1-207ENST00000468811 819 ntAPPRIS P1 TSL 2 BASIC4.26□□□□□ -1.73
CCDC140Q96MF4 AC103987.1-201ENST00000473394 348 ntBASIC4.26□□□□□ -1.73
CCDC140Q96MF4 SRP72-202ENST00000504757 745 ntTSL 2 BASIC4.26□□□□□ -1.73
CCDC140Q96MF4 AC022493.2-201ENST00000506122 481 ntBASIC4.26□□□□□ -1.73
CCDC140Q96MF4 PGAM1P13-201ENST00000507497 754 ntBASIC4.26□□□□□ -1.73
CCDC140Q96MF4 Y_RNA.720-201ENST00000517166 92 ntBASIC4.26□□□□□ -1.73
CCDC140Q96MF4 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC4.26□□□□□ -1.73
CCDC140Q96MF4 AC022360.1-201ENST00000521058 340 ntBASIC4.26□□□□□ -1.73
CCDC140Q96MF4 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC4.26□□□□□ -1.73
CCDC140Q96MF4 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC4.26□□□□□ -1.73
CCDC140Q96MF4 AL352979.3-201ENST00000553515 247 ntBASIC4.26□□□□□ -1.73
CCDC140Q96MF4 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC4.26□□□□□ -1.73
CCDC140Q96MF4 AP005403.1-201ENST00000579720 229 ntBASIC4.26□□□□□ -1.73
CCDC140Q96MF4 MIR4505-201ENST00000582238 73 ntBASIC4.26□□□□□ -1.73
CCDC140Q96MF4 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 95.4 ms