Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 LINC02211-204ENST00000642024 1070 ntBASIC3.17□□□□□ -1.9
VPS39Q96JC1 AC106754.1-201ENST00000562632 1513 ntBASIC3.17□□□□□ -1.9
VPS39Q96JC1 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC3.17□□□□□ -1.9
VPS39Q96JC1 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
VPS39Q96JC1 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
VPS39Q96JC1 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.16□□□□□ -1.9
VPS39Q96JC1 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC3.16□□□□□ -1.9
VPS39Q96JC1 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
VPS39Q96JC1 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC3.16□□□□□ -1.9
VPS39Q96JC1 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
VPS39Q96JC1 OR1S2-201ENST00000302592 978 ntBASIC3.16□□□□□ -1.9
VPS39Q96JC1 RNU6-216P-201ENST00000363282 104 ntBASIC3.16□□□□□ -1.9
VPS39Q96JC1 RNU1-33P-201ENST00000364249 162 ntBASIC3.16□□□□□ -1.9
VPS39Q96JC1 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
VPS39Q96JC1 SNORA46-201ENST00000384762 135 ntBASIC3.16□□□□□ -1.9
VPS39Q96JC1 SNORA48.7-201ENST00000391302 135 ntBASIC3.16□□□□□ -1.9
VPS39Q96JC1 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
VPS39Q96JC1 VN1R51P-201ENST00000411675 945 ntBASIC3.16□□□□□ -1.9
VPS39Q96JC1 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC3.16□□□□□ -1.9
VPS39Q96JC1 MTATP6P27-201ENST00000416987 621 ntBASIC3.16□□□□□ -1.9
VPS39Q96JC1 AL356320.2-201ENST00000417263 507 ntBASIC3.16□□□□□ -1.9
VPS39Q96JC1 MTND2P9-201ENST00000422293 931 ntBASIC3.16□□□□□ -1.9
VPS39Q96JC1 AC012498.1-201ENST00000424037 437 ntBASIC3.16□□□□□ -1.9
VPS39Q96JC1 RPF2P1-201ENST00000424137 906 ntBASIC3.16□□□□□ -1.9
VPS39Q96JC1 OR2AS1P-201ENST00000427827 319 ntBASIC3.16□□□□□ -1.9
VPS39Q96JC1 RPL23AP69-201ENST00000431134 458 ntBASIC3.16□□□□□ -1.9
VPS39Q96JC1 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC3.16□□□□□ -1.9
VPS39Q96JC1 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC3.16□□□□□ -1.9
VPS39Q96JC1 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC3.16□□□□□ -1.9
VPS39Q96JC1 LSM1P1-201ENST00000438629 273 ntBASIC3.16□□□□□ -1.9
VPS39Q96JC1 RPS12P18-201ENST00000442381 270 ntBASIC3.16□□□□□ -1.9
VPS39Q96JC1 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC3.16□□□□□ -1.9
VPS39Q96JC1 MTCO3P11-201ENST00000455103 774 ntBASIC3.16□□□□□ -1.9
VPS39Q96JC1 RPS15AP17-201ENST00000470598 390 ntBASIC3.16□□□□□ -1.9
VPS39Q96JC1 AC069528.1-202ENST00000482888 637 ntBASIC3.16□□□□□ -1.9
VPS39Q96JC1 GTF2IP9-201ENST00000502460 301 ntBASIC3.16□□□□□ -1.9
VPS39Q96JC1 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC3.16□□□□□ -1.9
VPS39Q96JC1 AC109464.2-201ENST00000510242 943 ntBASIC3.16□□□□□ -1.9
VPS39Q96JC1 AC008837.2-201ENST00000513076 418 ntBASIC3.16□□□□□ -1.9
VPS39Q96JC1 AC103783.1-201ENST00000520506 373 ntBASIC3.16□□□□□ -1.9
VPS39Q96JC1 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC3.16□□□□□ -1.9
VPS39Q96JC1 HMGB1P14-201ENST00000557424 591 ntBASIC3.16□□□□□ -1.9
VPS39Q96JC1 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC3.16□□□□□ -1.9
VPS39Q96JC1 GTF2IP8-201ENST00000560687 584 ntBASIC3.16□□□□□ -1.9
VPS39Q96JC1 AC023813.2-201ENST00000564321 469 ntBASIC3.16□□□□□ -1.9
VPS39Q96JC1 AC010653.1-201ENST00000571108 881 ntBASIC3.16□□□□□ -1.9
VPS39Q96JC1 MIR1254-2-201ENST00000579553 63 ntBASIC3.16□□□□□ -1.9
VPS39Q96JC1 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC3.16□□□□□ -1.9
VPS39Q96JC1 MIR4637-201ENST00000582405 84 ntBASIC3.16□□□□□ -1.9
VPS39Q96JC1 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC3.16□□□□□ -1.9
VPS39Q96JC1 MTCO2P2-201ENST00000591258 225 ntBASIC3.16□□□□□ -1.9
VPS39Q96JC1 RPL23AP78-201ENST00000599928 470 ntBASIC3.16□□□□□ -1.9
VPS39Q96JC1 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC3.16□□□□□ -1.9
VPS39Q96JC1 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC3.16□□□□□ -1.9
VPS39Q96JC1 AC009974.1-201ENST00000608881 455 ntBASIC3.16□□□□□ -1.9
VPS39Q96JC1 AC073348.1-201ENST00000623002 331 ntBASIC3.16□□□□□ -1.9
VPS39Q96JC1 AL078595.3-201ENST00000623815 1166 ntBASIC3.16□□□□□ -1.9
VPS39Q96JC1 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.16□□□□□ -1.9
VPS39Q96JC1 AC109315.1-201ENST00000584143 1347 ntBASIC3.16□□□□□ -1.9
VPS39Q96JC1 MTCO1P12-201ENST00000414273 1543 ntBASIC3.15□□□□□ -1.9
VPS39Q96JC1 SNRPEP3-201ENST00000338402 276 ntBASIC3.15□□□□□ -1.91
VPS39Q96JC1 RPL21P3-201ENST00000395517 478 ntBASIC3.15□□□□□ -1.91
VPS39Q96JC1 RPL5P18-201ENST00000406671 891 ntBASIC3.15□□□□□ -1.91
VPS39Q96JC1 AC245054.2-201ENST00000415639 319 ntBASIC3.15□□□□□ -1.91
VPS39Q96JC1 AL391839.1-201ENST00000417447 265 ntTSL 2 BASIC3.15□□□□□ -1.91
VPS39Q96JC1 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC3.15□□□□□ -1.91
VPS39Q96JC1 AL049637.1-201ENST00000424664 503 ntTSL 5 BASIC3.15□□□□□ -1.91
VPS39Q96JC1 THAP5P1-201ENST00000439089 262 ntBASIC3.15□□□□□ -1.91
VPS39Q96JC1 RPL23AP76-201ENST00000441860 458 ntBASIC3.15□□□□□ -1.91
VPS39Q96JC1 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC3.15□□□□□ -1.91
VPS39Q96JC1 Z96811.1-201ENST00000445880 108 ntBASIC3.15□□□□□ -1.91
VPS39Q96JC1 AC146507.2-201ENST00000460608 476 ntBASIC3.15□□□□□ -1.91
VPS39Q96JC1 AC090453.1-201ENST00000495560 436 ntBASIC3.15□□□□□ -1.91
VPS39Q96JC1 AC009901.1-201ENST00000506703 541 ntBASIC3.15□□□□□ -1.91
VPS39Q96JC1 GMPSP1-201ENST00000514075 579 ntBASIC3.15□□□□□ -1.91
VPS39Q96JC1 RN7SKP31-201ENST00000516354 278 ntBASIC3.15□□□□□ -1.91
VPS39Q96JC1 RNU6-798P-201ENST00000516912 103 ntBASIC3.15□□□□□ -1.91
VPS39Q96JC1 AC022784.3-202ENST00000517816 826 ntTSL 3 BASIC3.15□□□□□ -1.91
VPS39Q96JC1 AC027701.1-201ENST00000520155 823 ntTSL 3 BASIC3.15□□□□□ -1.91
VPS39Q96JC1 AC087808.1-201ENST00000520501 361 ntBASIC3.15□□□□□ -1.91
VPS39Q96JC1 HSPA8P13-201ENST00000523715 472 ntBASIC3.15□□□□□ -1.91
VPS39Q96JC1 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC3.15□□□□□ -1.91
VPS39Q96JC1 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC3.15□□□□□ -1.91
VPS39Q96JC1 NCAPGP2-201ENST00000557911 754 ntBASIC3.15□□□□□ -1.91
VPS39Q96JC1 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC3.15□□□□□ -1.91
VPS39Q96JC1 MIR4429-201ENST00000580105 73 ntBASIC3.15□□□□□ -1.91
VPS39Q96JC1 AC020895.1-201ENST00000595362 272 ntBASIC3.15□□□□□ -1.91
VPS39Q96JC1 AL161629.2-201ENST00000615347 275 ntBASIC3.15□□□□□ -1.91
VPS39Q96JC1 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
VPS39Q96JC1 AC022960.3-201ENST00000619794 441 ntBASIC3.15□□□□□ -1.91
VPS39Q96JC1 MIR6075-201ENST00000620782 95 ntBASIC3.15□□□□□ -1.91
VPS39Q96JC1 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC3.15□□□□□ -1.91
VPS39Q96JC1 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.15□□□□□ -1.91
VPS39Q96JC1 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
VPS39Q96JC1 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
VPS39Q96JC1 FAM35BP-202ENST00000497389 3337 ntBASIC3.14□□□□□ -1.91
VPS39Q96JC1 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC3.14□□□□□ -1.91
VPS39Q96JC1 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
VPS39Q96JC1 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.14□□□□□ -1.91
VPS39Q96JC1 5S_rRNA.1-201ENST00000364415 116 ntBASIC3.14□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 115.6 ms